Wall clock time and date at job start Tue Mar 31 2020 06:22:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31512 * 1 3 3 Si 1.86804 * 120.00254 * 2 1 4 4 H 1.48500 * 109.47137 * 269.81289 * 3 2 1 5 5 H 1.48497 * 109.46691 * 29.80979 * 3 2 1 6 6 H 1.48496 * 109.47292 * 149.81126 * 3 2 1 7 7 C 1.37882 * 120.00158 * 180.02562 * 2 1 3 8 8 H 1.07993 * 119.99726 * 354.14182 * 7 2 1 9 9 C 1.50697 * 119.99843 * 174.41421 * 7 2 1 10 10 C 1.52999 * 115.55349 * 294.36013 * 9 7 2 11 11 N 1.46503 * 109.47048 * 295.02105 * 10 9 7 12 12 C 1.34782 * 119.99545 * 182.17372 * 11 10 9 13 13 O 1.21276 * 120.00172 * 5.07317 * 12 11 10 14 14 C 1.50697 * 119.99281 * 185.07106 * 12 11 10 15 15 S 1.81408 * 109.46844 * 184.91771 * 14 12 11 16 16 C 1.76195 * 103.00049 * 180.02562 * 15 14 12 17 17 C 1.39551 * 120.87294 * 359.72442 * 16 15 14 18 18 C 1.37863 * 119.06168 * 179.74629 * 17 16 15 19 19 N 1.32018 * 120.84962 * 0.53639 * 18 17 16 20 20 C 1.32011 * 121.92006 * 359.71699 * 19 18 17 21 21 C 1.37865 * 120.85165 * 0.02562 * 20 19 18 22 22 C 1.53000 * 117.49756 * 148.69436 * 9 7 2 23 23 C 1.53001 * 117.49777 * 80.03682 * 9 7 2 24 24 H 0.97004 * 119.99811 * 359.97438 * 1 2 3 25 25 H 1.09001 * 109.46541 * 55.01382 * 10 9 7 26 26 H 1.08998 * 109.47411 * 175.01761 * 10 9 7 27 27 H 0.96997 * 119.99689 * 2.16197 * 11 10 9 28 28 H 1.08996 * 109.47929 * 304.92031 * 14 12 11 29 29 H 1.09003 * 109.46992 * 64.92574 * 14 12 11 30 30 H 1.08003 * 120.46729 * 359.97438 * 17 16 15 31 31 H 1.08004 * 119.57774 * 180.25214 * 18 17 16 32 32 H 1.08005 * 119.57978 * 179.97438 * 20 19 18 33 33 H 1.07998 * 120.47055 * 179.97438 * 21 20 19 34 34 H 1.09000 * 117.49767 * 359.97438 * 22 9 7 35 35 H 1.08999 * 117.50470 * 145.01595 * 22 9 7 36 36 H 1.09005 * 117.49569 * 214.97325 * 23 9 7 37 37 H 1.08991 * 117.49851 * 359.96955 * 23 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.5007 2.0441 -1.4001 5 1 1.4446 2.6538 0.6960 6 1 3.5447 1.4413 0.7040 7 6 2.0046 -1.1941 -0.0005 8 1 1.4688 -2.1269 0.0945 9 6 3.5062 -1.1970 -0.1276 10 6 4.0566 -0.6903 -1.4622 11 7 3.6464 -1.5985 -2.5360 12 6 4.0551 -1.3747 -3.8007 13 8 4.8357 -0.4768 -4.0358 14 6 3.5420 -2.2402 -4.9226 15 16 4.3798 -1.7881 -6.4668 16 6 3.6620 -2.8859 -7.6432 17 6 2.6940 -3.8146 -7.2585 18 6 2.1534 -4.6519 -8.2110 19 7 2.5480 -4.5900 -9.4693 20 6 3.4645 -3.7293 -9.8719 21 6 4.0507 -2.8535 -8.9831 22 6 4.2720 -2.3226 0.5706 23 6 4.3223 -0.8994 1.1319 24 1 -0.4850 0.8401 0.0004 25 1 3.6654 0.3075 -1.6610 26 1 5.1449 -0.6513 -1.4151 27 1 3.0809 -2.3610 -2.3367 28 1 3.7412 -3.2872 -4.6942 29 1 2.4681 -2.0908 -5.0347 30 1 2.3703 -3.8739 -6.2299 31 1 1.4007 -5.3711 -7.9232 32 1 3.7594 -3.7115 -10.9107 33 1 4.8002 -2.1522 -9.3190 34 1 3.6897 -3.0607 1.1222 35 1 5.1680 -2.7019 0.0795 36 1 5.2515 -0.3429 1.0097 37 1 3.7731 -0.7010 2.0522 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000431173687.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:22:32 Heat of formation + Delta-G solvation = 25.827192 kcal Electronic energy + Delta-G solvation = -19937.999450 eV Core-core repulsion = 16807.457306 eV Total energy + Delta-G solvation = -3130.542144 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 292.099 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -40.09774 -39.39538 -37.13850 -33.66900 -32.78096 -32.27894 -31.66270 -30.21381 -26.66443 -25.09885 -23.99407 -23.61059 -21.75932 -20.30021 -19.39071 -18.36909 -17.01975 -16.72744 -16.44823 -16.00243 -15.69281 -15.56081 -14.97711 -14.84375 -14.19532 -14.03547 -13.80457 -13.48263 -13.27223 -12.92464 -12.88862 -12.37739 -12.11964 -12.06278 -11.16502 -10.85080 -10.79832 -10.69170 -10.61753 -10.37166 -9.91710 -9.64989 -9.58458 -9.46885 -9.26274 -8.90866 -8.61448 -8.50114 -7.77436 -6.26923 -4.30699 0.83667 0.88411 1.06147 2.09108 2.76162 3.21160 3.31922 3.36624 3.47990 3.52893 4.21215 4.30184 4.51826 4.67370 4.71126 4.80412 4.89898 4.93847 5.08742 5.12557 5.21568 5.49624 5.53576 5.56290 5.72585 5.86002 6.02183 6.09359 6.33168 6.37944 6.38147 6.61180 6.79846 6.89439 7.01739 7.56820 7.73183 7.87168 8.30647 8.45007 8.73911 9.36315 10.83885 Molecular weight = 292.10amu Principal moments of inertia in cm(-1) A = 0.023385 B = 0.003412 C = 0.003340 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1197.076519 B = 8203.713047 C = 8382.258704 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.891 5.891 2 C 0.084 3.916 3 Si 0.865 3.135 4 H -0.276 1.276 5 H -0.291 1.291 6 H -0.249 1.249 7 C -0.493 4.493 8 H 0.078 0.922 9 C -0.020 4.020 10 C 0.153 3.847 11 N -0.692 5.692 12 C 0.525 3.475 13 O -0.539 6.539 14 C -0.154 4.154 15 S -0.008 6.008 16 C -0.059 4.059 17 C -0.192 4.192 18 C 0.119 3.881 19 N -0.497 5.497 20 C 0.115 3.885 21 C -0.158 4.158 22 C -0.180 4.180 23 C -0.183 4.183 24 H 0.267 0.733 25 H 0.061 0.939 26 H 0.052 0.948 27 H 0.409 0.591 28 H 0.117 0.883 29 H 0.122 0.878 30 H 0.137 0.863 31 H 0.158 0.842 32 H 0.159 0.841 33 H 0.139 0.861 34 H 0.086 0.914 35 H 0.073 0.927 36 H 0.071 0.929 37 H 0.090 0.910 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.824 -7.364 -13.147 16.542 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.527 5.527 2 C -0.120 4.120 3 Si 0.692 3.308 4 H -0.202 1.202 5 H -0.217 1.217 6 H -0.172 1.172 7 C -0.530 4.530 8 H 0.096 0.904 9 C -0.021 4.021 10 C 0.029 3.971 11 N -0.341 5.341 12 C 0.308 3.692 13 O -0.417 6.417 14 C -0.305 4.305 15 S 0.236 5.764 16 C -0.180 4.180 17 C -0.219 4.219 18 C -0.039 4.039 19 N -0.208 5.208 20 C -0.043 4.043 21 C -0.184 4.184 22 C -0.217 4.217 23 C -0.222 4.222 24 H 0.077 0.923 25 H 0.079 0.921 26 H 0.070 0.930 27 H 0.244 0.756 28 H 0.135 0.865 29 H 0.140 0.860 30 H 0.155 0.845 31 H 0.176 0.824 32 H 0.176 0.824 33 H 0.157 0.843 34 H 0.105 0.895 35 H 0.091 0.909 36 H 0.090 0.910 37 H 0.108 0.892 Dipole moment (debyes) X Y Z Total from point charges 7.673 -6.249 -13.919 17.078 hybrid contribution -0.678 0.182 1.017 1.236 sum 6.995 -6.067 -12.902 15.881 Atomic orbital electron populations 1.69882 1.06388 1.27422 1.49013 1.24918 0.94514 0.99098 0.93455 0.87065 0.81421 0.83529 0.78788 1.20236 1.21707 1.17242 1.20221 0.86453 0.94636 1.51677 0.90361 1.19605 0.94889 0.99388 0.88213 1.21182 0.97077 0.92620 0.86189 1.45726 1.51593 1.30700 1.06120 1.19409 0.81822 0.84535 0.83465 1.90720 1.34778 1.32863 1.83357 1.23917 1.05760 1.04888 0.95938 1.86306 1.49742 1.42601 0.97783 1.22750 0.98190 0.98537 0.98539 1.22195 0.99376 0.98394 1.01902 1.22676 0.96871 0.96229 0.88093 1.67760 1.13187 1.21794 1.18048 1.22693 0.91492 0.90262 0.99828 1.21735 1.02777 1.02104 0.91822 1.22813 1.01469 0.91924 1.05510 1.23037 1.01193 0.98058 0.99876 0.92345 0.92093 0.92982 0.75588 0.86468 0.85961 0.84535 0.82437 0.82361 0.84271 0.89532 0.90857 0.91040 0.89185 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -25.45 13.96 55.43 0.77 -24.68 16 2 C 0.08 2.24 5.47 -17.82 -0.10 2.14 16 3 Si 0.86 20.56 25.04 -169.99 -4.26 16.30 16 4 H -0.28 -6.69 6.89 56.52 0.39 -6.30 16 5 H -0.29 -7.00 7.11 56.52 0.40 -6.59 16 6 H -0.25 -5.55 5.78 56.52 0.33 -5.22 16 7 C -0.49 -12.34 9.17 -34.44 -0.32 -12.66 16 8 H 0.08 2.12 8.06 -52.49 -0.42 1.70 16 9 C -0.02 -0.41 0.84 -155.66 -0.13 -0.54 16 10 C 0.15 3.08 5.14 -4.04 -0.02 3.06 16 11 N -0.69 -12.05 5.47 -60.29 -0.33 -12.38 16 12 C 0.52 8.82 7.84 -10.98 -0.09 8.74 16 13 O -0.54 -10.97 15.88 5.56 0.09 -10.88 16 14 C -0.15 -1.89 4.86 36.00 0.17 -1.72 16 15 S -0.01 -0.11 21.10 -107.50 -2.27 -2.38 16 16 C -0.06 -0.66 6.17 -38.60 -0.24 -0.90 16 17 C -0.19 -1.96 9.43 -39.23 -0.37 -2.33 16 18 C 0.12 1.19 11.17 -17.61 -0.20 1.00 16 19 N -0.50 -5.55 10.36 -13.36 -0.14 -5.69 16 20 C 0.11 1.10 11.17 -17.61 -0.20 0.91 16 21 C -0.16 -1.58 9.90 -39.23 -0.39 -1.97 16 22 C -0.18 -3.25 9.96 -26.69 -0.27 -3.51 16 23 C -0.18 -3.57 8.04 -26.69 -0.21 -3.78 16 24 H 0.27 7.25 8.31 -40.82 -0.34 6.91 16 25 H 0.06 1.38 4.99 -51.93 -0.26 1.12 16 26 H 0.05 1.01 8.09 -51.93 -0.42 0.59 16 27 H 0.41 6.43 8.36 -40.82 -0.34 6.09 16 28 H 0.12 1.11 7.79 -51.93 -0.40 0.71 16 29 H 0.12 1.34 7.81 -51.92 -0.41 0.94 16 30 H 0.14 1.16 6.08 -52.48 -0.32 0.84 16 31 H 0.16 1.16 8.06 -52.48 -0.42 0.74 16 32 H 0.16 1.03 8.06 -52.48 -0.42 0.61 16 33 H 0.14 1.15 8.06 -52.49 -0.42 0.73 16 34 H 0.09 1.55 8.14 -51.93 -0.42 1.13 16 35 H 0.07 1.18 8.14 -51.93 -0.42 0.76 16 36 H 0.07 1.29 8.14 -51.93 -0.42 0.86 16 37 H 0.09 1.81 8.14 -51.93 -0.42 1.39 16 LS Contribution 326.97 15.07 4.93 4.93 Total: -1.00 -31.05 326.97 -8.30 -39.36 By element: Atomic # 1 Polarization: 11.75 SS G_CDS: -4.75 Total: 6.99 kcal Atomic # 6 Polarization: -9.22 SS G_CDS: -2.35 Total: -11.57 kcal Atomic # 7 Polarization: -43.05 SS G_CDS: 0.31 Total: -42.75 kcal Atomic # 8 Polarization: -10.97 SS G_CDS: 0.09 Total: -10.88 kcal Atomic # 14 Polarization: 20.56 SS G_CDS: -4.26 Total: 16.30 kcal Atomic # 16 Polarization: -0.11 SS G_CDS: -2.27 Total: -2.38 kcal Total LS contribution 4.93 Total: 4.93 kcal Total: -31.05 -8.30 -39.36 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000431173687.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 65.183 kcal (2) G-P(sol) polarization free energy of solvation -31.052 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 34.131 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.304 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.356 kcal (6) G-S(sol) free energy of system = (1) + (5) 25.827 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds