Wall clock time and date at job start Tue Mar 31 2020 06:22:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31512 * 1 3 3 Si 1.86804 * 120.00254 * 2 1 4 4 H 1.48500 * 109.47137 * 269.81289 * 3 2 1 5 5 H 1.48497 * 109.46691 * 29.80979 * 3 2 1 6 6 H 1.48496 * 109.47292 * 149.81126 * 3 2 1 7 7 C 1.37882 * 120.00158 * 180.02562 * 2 1 3 8 8 H 1.07993 * 119.99726 * 354.14182 * 7 2 1 9 9 C 1.50697 * 119.99843 * 174.41421 * 7 2 1 10 10 C 1.52999 * 115.55349 * 294.36013 * 9 7 2 11 11 N 1.46503 * 109.47048 * 295.02105 * 10 9 7 12 12 C 1.34782 * 119.99545 * 182.17372 * 11 10 9 13 13 O 1.21276 * 120.00172 * 5.07317 * 12 11 10 14 14 C 1.50697 * 119.99281 * 185.07106 * 12 11 10 15 15 S 1.81408 * 109.46844 * 184.91771 * 14 12 11 16 16 C 1.76195 * 103.00049 * 180.02562 * 15 14 12 17 17 C 1.39551 * 120.87294 * 359.72442 * 16 15 14 18 18 C 1.37863 * 119.06168 * 179.74629 * 17 16 15 19 19 N 1.32018 * 120.84962 * 0.53639 * 18 17 16 20 20 C 1.32011 * 121.92006 * 359.71699 * 19 18 17 21 21 C 1.37865 * 120.85165 * 0.02562 * 20 19 18 22 22 C 1.53000 * 117.49756 * 148.69436 * 9 7 2 23 23 C 1.53001 * 117.49777 * 80.03682 * 9 7 2 24 24 H 0.97004 * 119.99811 * 359.97438 * 1 2 3 25 25 H 1.09001 * 109.46541 * 55.01382 * 10 9 7 26 26 H 1.08998 * 109.47411 * 175.01761 * 10 9 7 27 27 H 0.96997 * 119.99689 * 2.16197 * 11 10 9 28 28 H 1.08996 * 109.47929 * 304.92031 * 14 12 11 29 29 H 1.09003 * 109.46992 * 64.92574 * 14 12 11 30 30 H 1.08003 * 120.46729 * 359.97438 * 17 16 15 31 31 H 1.08004 * 119.57774 * 180.25214 * 18 17 16 32 32 H 1.08005 * 119.57978 * 179.97438 * 20 19 18 33 33 H 1.07998 * 120.47055 * 179.97438 * 21 20 19 34 34 H 1.09000 * 117.49767 * 359.97438 * 22 9 7 35 35 H 1.08999 * 117.50470 * 145.01595 * 22 9 7 36 36 H 1.09005 * 117.49569 * 214.97325 * 23 9 7 37 37 H 1.08991 * 117.49851 * 359.96955 * 23 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.5007 2.0441 -1.4001 5 1 1.4446 2.6538 0.6960 6 1 3.5447 1.4413 0.7040 7 6 2.0046 -1.1941 -0.0005 8 1 1.4688 -2.1269 0.0945 9 6 3.5062 -1.1970 -0.1276 10 6 4.0566 -0.6903 -1.4622 11 7 3.6464 -1.5985 -2.5360 12 6 4.0551 -1.3747 -3.8007 13 8 4.8357 -0.4768 -4.0358 14 6 3.5420 -2.2402 -4.9226 15 16 4.3798 -1.7881 -6.4668 16 6 3.6620 -2.8859 -7.6432 17 6 2.6940 -3.8146 -7.2585 18 6 2.1534 -4.6519 -8.2110 19 7 2.5480 -4.5900 -9.4693 20 6 3.4645 -3.7293 -9.8719 21 6 4.0507 -2.8535 -8.9831 22 6 4.2720 -2.3226 0.5706 23 6 4.3223 -0.8994 1.1319 24 1 -0.4850 0.8401 0.0004 25 1 3.6654 0.3075 -1.6610 26 1 5.1449 -0.6513 -1.4151 27 1 3.0809 -2.3610 -2.3367 28 1 3.7412 -3.2872 -4.6942 29 1 2.4681 -2.0908 -5.0347 30 1 2.3703 -3.8739 -6.2299 31 1 1.4007 -5.3711 -7.9232 32 1 3.7594 -3.7115 -10.9107 33 1 4.8002 -2.1522 -9.3190 34 1 3.6897 -3.0607 1.1222 35 1 5.1680 -2.7019 0.0795 36 1 5.2515 -0.3429 1.0097 37 1 3.7731 -0.7010 2.0522 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000431173687.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:22:32 Heat of formation + Delta-G solvation = 5.362109 kcal Electronic energy + Delta-G solvation = -19938.886883 eV Core-core repulsion = 16807.457306 eV Total energy + Delta-G solvation = -3131.429577 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 292.099 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -40.85800 -40.79540 -38.72456 -35.11983 -34.28214 -33.58190 -32.44396 -31.30744 -28.34196 -26.81975 -24.78979 -24.38140 -23.26638 -21.64898 -21.06889 -19.37456 -18.55259 -17.98958 -17.40277 -17.14559 -16.88890 -16.75866 -16.56223 -15.89631 -15.42647 -15.09712 -14.91705 -14.78165 -14.56095 -14.44479 -14.10519 -13.95327 -13.58689 -13.02464 -12.80100 -12.67532 -12.20134 -12.10002 -11.68834 -11.58334 -11.48838 -11.22144 -10.97747 -10.72031 -10.43037 -10.37324 -10.19881 -10.01070 -8.72198 -8.32713 -6.36600 0.04664 0.11046 0.14590 1.17570 1.30621 1.37947 1.44901 1.48307 2.18015 2.33196 2.77916 2.97895 3.31239 3.55910 3.65716 3.82616 3.89710 3.97037 4.00420 4.11827 4.21393 4.30306 4.44984 4.50637 4.51533 4.76902 4.78674 4.82936 4.92032 4.99070 5.07041 5.25340 5.43021 5.53051 5.66355 5.67510 6.28329 6.51562 6.71888 6.98710 7.12691 7.32687 8.81325 Molecular weight = 292.10amu Principal moments of inertia in cm(-1) A = 0.023385 B = 0.003412 C = 0.003340 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1197.076519 B = 8203.713047 C = 8382.258704 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.939 5.939 2 C 0.036 3.964 3 Si 0.912 3.088 4 H -0.286 1.286 5 H -0.298 1.298 6 H -0.224 1.224 7 C -0.476 4.476 8 H 0.049 0.951 9 C -0.043 4.043 10 C 0.159 3.841 11 N -0.692 5.692 12 C 0.523 3.477 13 O -0.576 6.576 14 C -0.141 4.141 15 S -0.048 6.048 16 C -0.067 4.067 17 C -0.195 4.195 18 C 0.112 3.888 19 N -0.518 5.518 20 C 0.112 3.888 21 C -0.163 4.163 22 C -0.152 4.152 23 C -0.184 4.184 24 H 0.264 0.736 25 H 0.033 0.967 26 H 0.064 0.936 27 H 0.417 0.583 28 H 0.150 0.850 29 H 0.137 0.863 30 H 0.153 0.847 31 H 0.181 0.819 32 H 0.187 0.813 33 H 0.152 0.848 34 H 0.086 0.914 35 H 0.101 0.899 36 H 0.092 0.908 37 H 0.080 0.920 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.250 -8.549 -13.733 18.158 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.578 5.578 2 C -0.163 4.163 3 Si 0.738 3.262 4 H -0.213 1.213 5 H -0.225 1.225 6 H -0.146 1.146 7 C -0.513 4.513 8 H 0.067 0.933 9 C -0.044 4.044 10 C 0.035 3.965 11 N -0.342 5.342 12 C 0.308 3.692 13 O -0.457 6.457 14 C -0.292 4.292 15 S 0.195 5.805 16 C -0.188 4.188 17 C -0.222 4.222 18 C -0.045 4.045 19 N -0.229 5.229 20 C -0.045 4.045 21 C -0.189 4.189 22 C -0.189 4.189 23 C -0.222 4.222 24 H 0.073 0.927 25 H 0.051 0.949 26 H 0.082 0.918 27 H 0.253 0.747 28 H 0.168 0.832 29 H 0.155 0.845 30 H 0.171 0.829 31 H 0.198 0.802 32 H 0.204 0.796 33 H 0.170 0.830 34 H 0.105 0.895 35 H 0.120 0.880 36 H 0.110 0.890 37 H 0.099 0.901 Dipole moment (debyes) X Y Z Total from point charges 9.113 -7.469 -14.498 18.682 hybrid contribution -1.125 0.444 1.145 1.665 sum 7.988 -7.025 -13.354 17.073 Atomic orbital electron populations 1.70000 1.07928 1.27828 1.52049 1.25542 0.94889 1.01939 0.93969 0.86319 0.81368 0.80295 0.78203 1.21334 1.22515 1.14607 1.20377 0.88817 0.92976 1.49149 0.93327 1.19443 0.92637 1.02903 0.89440 1.20940 0.97505 0.91750 0.86297 1.45689 1.51801 1.30572 1.06118 1.20034 0.80896 0.84332 0.83930 1.90702 1.36460 1.34608 1.83937 1.23823 1.06060 1.05534 0.93749 1.86439 1.50808 1.44186 0.99048 1.22742 0.98918 0.98685 0.98451 1.22422 0.98934 0.97954 1.02855 1.23098 0.97162 0.96530 0.87760 1.67810 1.13845 1.22473 1.18734 1.23156 0.90797 0.89485 1.01062 1.21986 1.02996 1.02389 0.91520 1.22859 1.01436 0.91057 1.03572 1.23087 1.01334 0.99550 0.98238 0.92671 0.94877 0.91786 0.74665 0.83203 0.84498 0.82948 0.80168 0.79643 0.82993 0.89499 0.88028 0.88965 0.90095 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -54.95 13.96 21.45 0.30 -54.65 16 2 C 0.04 1.91 5.47 84.66 0.46 2.38 16 3 Si 0.91 42.58 25.04 68.60 1.72 44.30 16 4 H -0.29 -13.77 6.89 99.48 0.68 -13.08 16 5 H -0.30 -14.14 7.11 99.48 0.71 -13.43 16 6 H -0.22 -9.39 5.78 99.48 0.58 -8.82 16 7 C -0.48 -23.77 9.17 25.60 0.23 -23.53 16 8 H 0.05 2.67 8.06 -2.91 -0.02 2.65 16 9 C -0.04 -1.72 0.84 -52.93 -0.04 -1.76 16 10 C 0.16 6.16 5.14 86.38 0.44 6.60 16 11 N -0.69 -23.03 5.47 -463.06 -2.53 -25.57 16 12 C 0.52 16.89 7.84 87.66 0.69 17.58 16 13 O -0.58 -23.11 15.88 -3.02 -0.05 -23.16 16 14 C -0.14 -3.19 4.86 71.24 0.35 -2.85 16 15 S -0.05 -1.19 21.10 -56.49 -1.19 -2.38 16 16 C -0.07 -1.39 6.17 22.90 0.14 -1.25 16 17 C -0.20 -3.57 9.43 22.50 0.21 -3.35 16 18 C 0.11 2.01 11.17 84.58 0.94 2.95 16 19 N -0.52 -10.57 10.36 -196.18 -2.03 -12.60 16 20 C 0.11 1.94 11.17 84.58 0.94 2.88 16 21 C -0.16 -3.00 9.90 22.50 0.22 -2.78 16 22 C -0.15 -5.00 9.96 30.62 0.30 -4.70 16 23 C -0.18 -6.63 8.04 30.62 0.25 -6.38 16 24 H 0.26 14.82 8.31 -92.71 -0.77 14.05 16 25 H 0.03 1.47 4.99 -2.39 -0.01 1.46 16 26 H 0.06 2.32 8.09 -2.39 -0.02 2.30 16 27 H 0.42 12.41 8.36 -92.71 -0.77 11.63 16 28 H 0.15 2.38 7.79 -2.39 -0.02 2.36 16 29 H 0.14 2.72 7.81 -2.39 -0.02 2.70 16 30 H 0.15 2.17 6.08 -2.91 -0.02 2.15 16 31 H 0.18 2.21 8.06 -2.91 -0.02 2.19 16 32 H 0.19 1.97 8.06 -2.91 -0.02 1.95 16 33 H 0.15 2.30 8.06 -2.91 -0.02 2.27 16 34 H 0.09 2.87 8.14 -2.39 -0.02 2.85 16 35 H 0.10 2.81 8.14 -2.39 -0.02 2.80 16 36 H 0.09 2.97 8.14 -2.38 -0.02 2.95 16 37 H 0.08 3.07 8.14 -2.39 -0.02 3.05 16 Total: -1.00 -67.78 326.97 1.52 -66.26 By element: Atomic # 1 Polarization: 21.85 SS G_CDS: 0.16 Total: 22.01 kcal Atomic # 6 Polarization: -19.36 SS G_CDS: 5.15 Total: -14.21 kcal Atomic # 7 Polarization: -88.55 SS G_CDS: -4.27 Total: -92.82 kcal Atomic # 8 Polarization: -23.11 SS G_CDS: -0.05 Total: -23.16 kcal Atomic # 14 Polarization: 42.58 SS G_CDS: 1.72 Total: 44.30 kcal Atomic # 16 Polarization: -1.19 SS G_CDS: -1.19 Total: -2.38 kcal Total: -67.78 1.52 -66.26 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000431173687.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 71.623 kcal (2) G-P(sol) polarization free energy of solvation -67.783 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 3.840 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.522 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.261 kcal (6) G-S(sol) free energy of system = (1) + (5) 5.362 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds