Wall clock time and date at job start Tue Mar 31 2020 06:20:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31419 * 1 3 3 Si 1.86790 * 120.00091 * 2 1 4 4 H 1.48506 * 109.47049 * 239.99508 * 3 2 1 5 5 H 1.48498 * 109.47614 * 359.97438 * 3 2 1 6 6 H 1.48507 * 109.47321 * 119.99873 * 3 2 1 7 7 C 1.38956 * 119.99431 * 179.97438 * 2 1 3 8 8 H 1.07998 * 119.99418 * 197.98625 * 7 2 1 9 9 N 1.37094 * 120.00016 * 17.99198 * 7 2 1 10 10 C 1.34779 * 119.99788 * 44.48912 * 9 7 2 11 11 O 1.21285 * 120.00127 * 359.97438 * 10 9 7 12 12 C 1.50705 * 119.99644 * 179.97438 * 10 9 7 13 13 C 1.52997 * 109.46998 * 179.97438 * 12 10 9 14 14 S 1.81397 * 109.47000 * 179.97438 * 13 12 10 15 15 C 1.76200 * 103.00157 * 179.97438 * 14 13 12 16 16 C 1.39200 * 119.71671 * 179.97438 * 15 14 13 17 17 C 1.38263 * 119.09501 * 179.97438 * 16 15 14 18 18 C 1.38913 * 118.51396 * 0.02562 * 17 16 15 19 19 C 1.38025 * 119.33879 * 0.25395 * 18 17 16 20 20 N 1.31958 * 120.86168 * 359.45304 * 19 18 17 21 21 C 1.46502 * 119.99964 * 224.48154 * 9 7 2 22 22 C 1.52994 * 117.49750 * 3.27990 * 21 9 7 23 23 C 1.53001 * 117.49939 * 294.61881 * 21 9 7 24 24 H 0.97006 * 119.99496 * 354.96064 * 1 2 3 25 25 H 1.08995 * 109.47166 * 59.99513 * 12 10 9 26 26 H 1.09007 * 109.46869 * 299.99908 * 12 10 9 27 27 H 1.08995 * 109.47472 * 59.99807 * 13 12 10 28 28 H 1.09006 * 109.46807 * 299.99686 * 13 12 10 29 29 H 1.08003 * 120.44721 * 359.97438 * 16 15 14 30 30 H 1.08002 * 120.74052 * 180.02562 * 17 16 15 31 31 H 1.08000 * 120.32947 * 179.97438 * 18 17 16 32 32 H 1.08005 * 119.56761 * 179.72467 * 19 18 17 33 33 H 1.08993 * 115.54793 * 148.94163 * 21 9 7 34 34 H 1.09008 * 117.49842 * 359.97438 * 22 21 9 35 35 H 1.08999 * 117.49996 * 145.01621 * 22 21 9 36 36 H 1.08995 * 117.49452 * 214.97578 * 23 21 9 37 37 H 1.08996 * 117.49610 * 359.97340 * 23 21 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3142 0.0000 0.0000 3 14 2.2482 1.6176 0.0000 4 1 3.1020 1.6962 -1.2125 5 1 1.2833 2.7464 -0.0006 6 1 3.1019 1.6964 1.2126 7 6 2.0088 -1.2035 0.0005 8 1 3.0492 -1.2262 0.2894 9 7 1.3735 -2.3618 -0.3657 10 6 0.5766 -2.3787 -1.4525 11 8 0.4212 -1.3690 -2.1062 12 6 -0.1213 -3.6522 -1.8554 13 6 -0.9571 -3.4001 -3.1118 14 16 -1.7966 -4.9332 -3.5972 15 6 -2.6945 -4.4551 -5.0358 16 6 -3.4777 -5.3923 -5.7036 17 6 -4.1774 -5.0031 -6.8308 18 6 -4.0703 -3.6847 -7.2554 19 6 -3.2708 -2.8094 -6.5486 20 7 -2.6184 -3.2068 -5.4726 21 6 1.5610 -3.5813 0.4242 22 6 2.4157 -3.4792 1.6891 23 6 2.9615 -4.1968 0.4520 24 1 -0.4850 0.8369 0.0738 25 1 -0.7728 -3.9812 -1.0459 26 1 0.6208 -4.4238 -2.0609 27 1 -0.3059 -3.0709 -3.9215 28 1 -1.6992 -2.6287 -2.9058 29 1 -3.5379 -6.4096 -5.3460 30 1 -4.7933 -5.7082 -7.3691 31 1 -4.6039 -3.3492 -8.1324 32 1 -3.1814 -1.7847 -6.8780 33 1 0.7110 -4.2632 0.4449 34 1 2.8389 -2.5048 1.9333 35 1 2.1283 -4.0944 2.5417 36 1 3.0328 -5.2837 0.4913 37 1 3.7432 -3.6946 -0.1179 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000446020517.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:20:21 Heat of formation + Delta-G solvation = 35.709097 kcal Electronic energy + Delta-G solvation = -20274.559341 eV Core-core repulsion = 17144.445709 eV Total energy + Delta-G solvation = -3130.113632 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 292.099 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -39.92039 -38.59575 -36.14161 -33.07734 -32.61549 -31.85831 -31.30073 -30.71449 -25.73972 -23.96242 -23.67810 -22.87755 -21.66977 -21.08459 -19.10828 -17.90839 -16.67666 -16.36623 -16.05145 -16.00742 -15.07271 -14.81643 -14.59203 -14.29941 -14.04817 -13.79403 -13.44992 -13.25124 -12.70802 -12.49272 -12.08932 -11.66564 -11.48938 -11.13496 -10.98373 -10.87967 -10.80576 -10.46288 -10.23764 -10.13114 -10.10156 -9.94168 -9.74839 -9.71758 -9.54664 -8.68225 -8.01270 -7.46873 -7.01032 -6.09169 -3.85150 0.93059 1.17697 1.60375 2.48791 3.31705 3.39079 3.42339 3.65859 4.12747 4.29543 4.49386 4.71129 4.78489 4.87218 4.98094 5.00846 5.16182 5.29740 5.41211 5.55902 5.59537 5.62159 5.69375 5.79522 5.85815 6.00176 6.03834 6.15354 6.24223 6.37609 6.48853 6.49492 6.55595 6.76956 6.94882 7.63533 7.76956 8.29156 9.07881 9.17121 9.67730 10.30308 11.00029 Molecular weight = 292.10amu Principal moments of inertia in cm(-1) A = 0.019628 B = 0.003995 C = 0.003409 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1426.215219 B = 7007.477939 C = 8210.643207 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.834 5.834 2 C 0.074 3.926 3 Si 0.913 3.087 4 H -0.274 1.274 5 H -0.286 1.286 6 H -0.278 1.278 7 C -0.350 4.350 8 H 0.077 0.923 9 N -0.427 5.427 10 C 0.490 3.510 11 O -0.530 6.530 12 C -0.122 4.122 13 C -0.060 4.060 14 S -0.096 6.096 15 C 0.130 3.870 16 C -0.157 4.157 17 C -0.062 4.062 18 C -0.189 4.189 19 C 0.117 3.883 20 N -0.484 5.484 21 C 0.074 3.926 22 C -0.174 4.174 23 C -0.208 4.208 24 H 0.265 0.735 25 H 0.082 0.918 26 H 0.082 0.918 27 H 0.095 0.905 28 H 0.098 0.902 29 H 0.138 0.862 30 H 0.136 0.864 31 H 0.134 0.866 32 H 0.158 0.842 33 H 0.102 0.898 34 H 0.107 0.893 35 H 0.083 0.917 36 H 0.084 0.916 37 H 0.090 0.910 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.111 -11.591 -8.478 15.607 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.467 5.467 2 C -0.136 4.136 3 Si 0.740 3.260 4 H -0.200 1.200 5 H -0.212 1.212 6 H -0.204 1.204 7 C -0.477 4.477 8 H 0.094 0.906 9 N -0.149 5.149 10 C 0.275 3.725 11 O -0.407 6.407 12 C -0.164 4.164 13 C -0.209 4.209 14 S 0.147 5.853 15 C -0.119 4.119 16 C -0.184 4.184 17 C -0.089 4.089 18 C -0.212 4.212 19 C -0.043 4.043 20 N -0.197 5.197 21 C -0.032 4.032 22 C -0.211 4.211 23 C -0.247 4.247 24 H 0.075 0.925 25 H 0.100 0.900 26 H 0.101 0.899 27 H 0.114 0.886 28 H 0.117 0.883 29 H 0.155 0.845 30 H 0.154 0.846 31 H 0.152 0.848 32 H 0.175 0.825 33 H 0.120 0.880 34 H 0.125 0.875 35 H 0.102 0.898 36 H 0.102 0.898 37 H 0.109 0.891 Dipole moment (debyes) X Y Z Total from point charges -5.729 -11.375 -7.785 14.927 hybrid contribution -0.325 1.362 -0.964 1.700 sum -6.054 -10.013 -8.749 14.610 Atomic orbital electron populations 1.69817 1.06542 1.27511 1.42796 1.25242 0.94824 0.99356 0.94221 0.86268 0.79285 0.81950 0.78458 1.19950 1.21196 1.20382 1.18800 0.94366 0.83799 1.50717 0.90563 1.42726 1.44124 1.06935 1.21071 1.19531 0.83031 0.88343 0.81577 1.90544 1.62479 1.34662 1.53035 1.21409 0.99113 0.99610 0.96272 1.23202 1.01810 0.94756 1.01088 1.85290 1.54029 1.20422 1.25568 1.23176 0.97626 0.92263 0.98828 1.21653 0.99123 1.00467 0.97131 1.21458 0.96511 0.96121 0.94809 1.22058 1.02164 0.94680 1.02334 1.22791 0.91440 1.00087 0.90008 1.68188 1.21891 1.15343 1.14234 1.21708 0.92578 0.91640 0.97265 1.23069 1.04512 1.02449 0.91084 1.23323 0.99780 0.98461 1.03110 0.92546 0.89958 0.89940 0.88642 0.88309 0.84452 0.84588 0.84793 0.82522 0.88003 0.87502 0.89809 0.89782 0.89121 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.83 -24.88 11.74 55.50 0.65 -24.22 16 2 C 0.07 2.10 4.39 -17.46 -0.08 2.03 16 3 Si 0.91 22.14 29.59 -169.99 -5.03 17.11 16 4 H -0.27 -6.74 7.11 56.52 0.40 -6.34 16 5 H -0.29 -6.92 7.11 56.52 0.40 -6.52 16 6 H -0.28 -6.39 7.11 56.52 0.40 -5.99 16 7 C -0.35 -9.60 7.91 -14.93 -0.12 -9.72 16 8 H 0.08 2.02 7.27 -52.49 -0.38 1.64 16 9 N -0.43 -10.72 2.83 -107.73 -0.31 -11.03 16 10 C 0.49 12.43 6.96 -10.98 -0.08 12.36 16 11 O -0.53 -15.63 13.75 5.55 0.08 -15.56 16 12 C -0.12 -2.37 4.33 -27.88 -0.12 -2.49 16 13 C -0.06 -1.14 4.49 37.16 0.17 -0.97 16 14 S -0.10 -1.48 21.91 -107.50 -2.36 -3.84 16 15 C 0.13 1.96 7.00 -16.92 -0.12 1.84 16 16 C -0.16 -1.86 9.84 -39.21 -0.39 -2.24 16 17 C -0.06 -0.59 10.16 -39.32 -0.40 -0.99 16 18 C -0.19 -1.87 10.11 -39.41 -0.40 -2.27 16 19 C 0.12 1.48 11.17 -17.58 -0.20 1.29 16 20 N -0.48 -7.85 9.43 -12.11 -0.11 -7.97 16 21 C 0.07 1.49 5.87 -67.93 -0.40 1.09 16 22 C -0.17 -3.13 9.80 -26.70 -0.26 -3.39 16 23 C -0.21 -3.54 10.36 -26.69 -0.28 -3.82 16 24 H 0.26 7.60 8.32 -40.82 -0.34 7.26 16 25 H 0.08 1.51 7.56 -51.93 -0.39 1.11 16 26 H 0.08 1.42 8.11 -51.92 -0.42 1.00 16 27 H 0.09 1.94 8.10 -51.93 -0.42 1.52 16 28 H 0.10 2.11 8.10 -51.92 -0.42 1.69 16 29 H 0.14 1.33 8.06 -52.48 -0.42 0.91 16 30 H 0.14 0.86 8.06 -52.49 -0.42 0.43 16 31 H 0.13 0.91 8.06 -52.49 -0.42 0.48 16 32 H 0.16 1.62 8.06 -52.48 -0.42 1.20 16 33 H 0.10 1.82 6.96 -51.93 -0.36 1.46 16 34 H 0.11 2.14 6.73 -51.92 -0.35 1.79 16 35 H 0.08 1.28 8.14 -51.93 -0.42 0.86 16 36 H 0.08 1.19 8.14 -51.93 -0.42 0.77 16 37 H 0.09 1.66 8.14 -51.93 -0.42 1.24 16 LS Contribution 330.78 15.07 4.98 4.98 Total: -1.00 -33.72 330.78 -9.59 -43.32 By element: Atomic # 1 Polarization: 9.34 SS G_CDS: -4.84 Total: 4.50 kcal Atomic # 6 Polarization: -4.63 SS G_CDS: -2.66 Total: -7.29 kcal Atomic # 7 Polarization: -43.45 SS G_CDS: 0.23 Total: -43.22 kcal Atomic # 8 Polarization: -15.63 SS G_CDS: 0.08 Total: -15.56 kcal Atomic # 14 Polarization: 22.14 SS G_CDS: -5.03 Total: 17.11 kcal Atomic # 16 Polarization: -1.48 SS G_CDS: -2.36 Total: -3.84 kcal Total LS contribution 4.98 Total: 4.98 kcal Total: -33.72 -9.59 -43.32 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000446020517.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 79.026 kcal (2) G-P(sol) polarization free energy of solvation -33.722 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 45.304 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.595 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.317 kcal (6) G-S(sol) free energy of system = (1) + (5) 35.709 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds