Wall clock time and date at job start Tue Mar 31 2020 06:20:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31419 * 1 3 3 Si 1.86790 * 120.00091 * 2 1 4 4 H 1.48506 * 109.47049 * 239.99508 * 3 2 1 5 5 H 1.48498 * 109.47614 * 359.97438 * 3 2 1 6 6 H 1.48507 * 109.47321 * 119.99873 * 3 2 1 7 7 C 1.38956 * 119.99431 * 179.97438 * 2 1 3 8 8 H 1.07998 * 119.99418 * 197.98625 * 7 2 1 9 9 N 1.37094 * 120.00016 * 17.99198 * 7 2 1 10 10 C 1.34779 * 119.99788 * 44.48912 * 9 7 2 11 11 O 1.21285 * 120.00127 * 359.97438 * 10 9 7 12 12 C 1.50705 * 119.99644 * 179.97438 * 10 9 7 13 13 C 1.52997 * 109.46998 * 179.97438 * 12 10 9 14 14 S 1.81397 * 109.47000 * 179.97438 * 13 12 10 15 15 C 1.76200 * 103.00157 * 179.97438 * 14 13 12 16 16 C 1.39200 * 119.71671 * 179.97438 * 15 14 13 17 17 C 1.38263 * 119.09501 * 179.97438 * 16 15 14 18 18 C 1.38913 * 118.51396 * 0.02562 * 17 16 15 19 19 C 1.38025 * 119.33879 * 0.25395 * 18 17 16 20 20 N 1.31958 * 120.86168 * 359.45304 * 19 18 17 21 21 C 1.46502 * 119.99964 * 224.48154 * 9 7 2 22 22 C 1.52994 * 117.49750 * 3.27990 * 21 9 7 23 23 C 1.53001 * 117.49939 * 294.61881 * 21 9 7 24 24 H 0.97006 * 119.99496 * 354.96064 * 1 2 3 25 25 H 1.08995 * 109.47166 * 59.99513 * 12 10 9 26 26 H 1.09007 * 109.46869 * 299.99908 * 12 10 9 27 27 H 1.08995 * 109.47472 * 59.99807 * 13 12 10 28 28 H 1.09006 * 109.46807 * 299.99686 * 13 12 10 29 29 H 1.08003 * 120.44721 * 359.97438 * 16 15 14 30 30 H 1.08002 * 120.74052 * 180.02562 * 17 16 15 31 31 H 1.08000 * 120.32947 * 179.97438 * 18 17 16 32 32 H 1.08005 * 119.56761 * 179.72467 * 19 18 17 33 33 H 1.08993 * 115.54793 * 148.94163 * 21 9 7 34 34 H 1.09008 * 117.49842 * 359.97438 * 22 21 9 35 35 H 1.08999 * 117.49996 * 145.01621 * 22 21 9 36 36 H 1.08995 * 117.49452 * 214.97578 * 23 21 9 37 37 H 1.08996 * 117.49610 * 359.97340 * 23 21 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3142 0.0000 0.0000 3 14 2.2482 1.6176 0.0000 4 1 3.1020 1.6962 -1.2125 5 1 1.2833 2.7464 -0.0006 6 1 3.1019 1.6964 1.2126 7 6 2.0088 -1.2035 0.0005 8 1 3.0492 -1.2262 0.2894 9 7 1.3735 -2.3618 -0.3657 10 6 0.5766 -2.3787 -1.4525 11 8 0.4212 -1.3690 -2.1062 12 6 -0.1213 -3.6522 -1.8554 13 6 -0.9571 -3.4001 -3.1118 14 16 -1.7966 -4.9332 -3.5972 15 6 -2.6945 -4.4551 -5.0358 16 6 -3.4777 -5.3923 -5.7036 17 6 -4.1774 -5.0031 -6.8308 18 6 -4.0703 -3.6847 -7.2554 19 6 -3.2708 -2.8094 -6.5486 20 7 -2.6184 -3.2068 -5.4726 21 6 1.5610 -3.5813 0.4242 22 6 2.4157 -3.4792 1.6891 23 6 2.9615 -4.1968 0.4520 24 1 -0.4850 0.8369 0.0738 25 1 -0.7728 -3.9812 -1.0459 26 1 0.6208 -4.4238 -2.0609 27 1 -0.3059 -3.0709 -3.9215 28 1 -1.6992 -2.6287 -2.9058 29 1 -3.5379 -6.4096 -5.3460 30 1 -4.7933 -5.7082 -7.3691 31 1 -4.6039 -3.3492 -8.1324 32 1 -3.1814 -1.7847 -6.8780 33 1 0.7110 -4.2632 0.4449 34 1 2.8389 -2.5048 1.9333 35 1 2.1283 -4.0944 2.5417 36 1 3.0328 -5.2837 0.4913 37 1 3.7432 -3.6946 -0.1179 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000446020517.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:20:20 Heat of formation + Delta-G solvation = 14.930974 kcal Electronic energy + Delta-G solvation = -20275.460348 eV Core-core repulsion = 17144.445709 eV Total energy + Delta-G solvation = -3131.014639 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 292.099 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -40.85702 -40.44324 -37.84539 -34.97904 -33.79023 -33.38806 -32.63724 -32.21897 -27.65849 -25.35061 -24.63052 -24.18152 -23.08555 -22.73555 -20.94833 -18.91760 -18.49129 -17.84174 -17.33444 -17.03720 -16.75263 -16.47528 -16.03446 -15.85020 -15.39322 -15.17186 -14.86989 -14.38174 -14.16510 -14.05893 -13.69752 -13.17490 -12.95162 -12.86248 -12.75466 -12.61411 -12.34179 -12.18524 -12.09984 -11.65871 -11.51460 -11.20621 -11.02359 -10.74743 -10.72695 -10.51570 -9.98866 -8.98074 -8.61356 -8.21172 -5.99916 0.00722 0.31095 0.42660 1.16759 1.34299 1.43471 1.46651 2.22735 2.39559 2.73333 3.09430 3.13790 3.36206 3.59503 3.83590 3.95302 3.97817 4.08000 4.13114 4.16199 4.20132 4.31029 4.40621 4.46814 4.57940 4.75825 4.78966 4.91637 4.97331 5.06189 5.07661 5.21123 5.30468 5.46465 5.50622 5.68440 6.19279 6.81604 7.02418 7.18668 7.68359 8.33941 8.87499 Molecular weight = 292.10amu Principal moments of inertia in cm(-1) A = 0.019628 B = 0.003995 C = 0.003409 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1426.215219 B = 7007.477939 C = 8210.643207 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.873 5.873 2 C 0.022 3.978 3 Si 0.970 3.030 4 H -0.282 1.282 5 H -0.288 1.288 6 H -0.254 1.254 7 C -0.358 4.358 8 H 0.079 0.921 9 N -0.443 5.443 10 C 0.471 3.529 11 O -0.586 6.586 12 C -0.103 4.103 13 C -0.053 4.053 14 S -0.066 6.066 15 C 0.091 3.909 16 C -0.155 4.155 17 C -0.054 4.054 18 C -0.170 4.170 19 C 0.090 3.910 20 N -0.532 5.532 21 C 0.041 3.959 22 C -0.170 4.170 23 C -0.179 4.179 24 H 0.259 0.741 25 H 0.097 0.903 26 H 0.110 0.890 27 H 0.070 0.930 28 H 0.061 0.939 29 H 0.160 0.840 30 H 0.181 0.819 31 H 0.173 0.827 32 H 0.167 0.833 33 H 0.127 0.873 34 H 0.080 0.920 35 H 0.118 0.882 36 H 0.126 0.874 37 H 0.073 0.927 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.678 -14.421 -9.238 18.382 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.508 5.508 2 C -0.184 4.184 3 Si 0.795 3.205 4 H -0.208 1.208 5 H -0.214 1.214 6 H -0.178 1.178 7 C -0.486 4.486 8 H 0.096 0.904 9 N -0.163 5.163 10 C 0.259 3.741 11 O -0.468 6.468 12 C -0.145 4.145 13 C -0.203 4.203 14 S 0.176 5.824 15 C -0.157 4.157 16 C -0.181 4.181 17 C -0.081 4.081 18 C -0.193 4.193 19 C -0.070 4.070 20 N -0.246 5.246 21 C -0.064 4.064 22 C -0.208 4.208 23 C -0.217 4.217 24 H 0.068 0.932 25 H 0.115 0.885 26 H 0.128 0.872 27 H 0.089 0.911 28 H 0.080 0.920 29 H 0.177 0.823 30 H 0.198 0.802 31 H 0.190 0.810 32 H 0.184 0.816 33 H 0.144 0.856 34 H 0.099 0.901 35 H 0.136 0.864 36 H 0.144 0.856 37 H 0.092 0.908 Dipole moment (debyes) X Y Z Total from point charges -6.266 -14.238 -8.513 17.733 hybrid contribution -0.194 2.155 -0.860 2.329 sum -6.460 -12.083 -9.373 16.601 Atomic orbital electron populations 1.69939 1.08039 1.27626 1.45158 1.26071 0.95505 1.02647 0.94222 0.85382 0.78147 0.78164 0.78839 1.20822 1.21376 1.17794 1.19080 0.94691 0.85191 1.49602 0.90377 1.42974 1.43650 1.08027 1.21662 1.20515 0.82870 0.89629 0.81116 1.90496 1.64388 1.37113 1.54806 1.21244 0.99478 0.97050 0.96750 1.22815 1.00738 0.96511 1.00190 1.84834 1.54115 1.16696 1.26720 1.23332 0.99709 0.93101 0.99586 1.21986 0.98033 1.00751 0.97324 1.22011 0.95659 0.96700 0.93780 1.22496 1.00156 0.94329 1.02320 1.23175 0.92360 1.01498 0.89931 1.68056 1.23783 1.16513 1.16201 1.22055 0.95201 0.90543 0.98567 1.23124 1.03526 1.02087 0.92033 1.23338 0.96651 1.00535 1.01199 0.93229 0.88459 0.87151 0.91096 0.91977 0.82276 0.80155 0.80951 0.81551 0.85570 0.90150 0.86381 0.85558 0.90790 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.87 -54.53 11.74 21.67 0.25 -54.27 16 2 C 0.02 1.27 4.39 84.93 0.37 1.64 16 3 Si 0.97 46.89 29.59 68.60 2.03 48.92 16 4 H -0.28 -13.87 7.11 99.48 0.71 -13.16 16 5 H -0.29 -13.85 7.11 99.48 0.71 -13.15 16 6 H -0.25 -11.13 7.11 99.48 0.71 -10.43 16 7 C -0.36 -20.18 7.91 84.04 0.66 -19.51 16 8 H 0.08 4.24 7.27 -2.91 -0.02 4.22 16 9 N -0.44 -22.64 2.83 -613.14 -1.74 -24.38 16 10 C 0.47 24.86 6.96 87.66 0.61 25.47 16 11 O -0.59 -36.77 13.75 -3.05 -0.04 -36.82 16 12 C -0.10 -4.09 4.33 29.85 0.13 -3.96 16 13 C -0.05 -2.13 4.49 71.98 0.32 -1.81 16 14 S -0.07 -2.03 21.91 -56.49 -1.24 -3.27 16 15 C 0.09 2.73 7.00 84.83 0.59 3.32 16 16 C -0.15 -3.28 9.84 22.51 0.22 -3.06 16 17 C -0.05 -0.84 10.16 22.44 0.23 -0.61 16 18 C -0.17 -2.86 10.11 22.38 0.23 -2.63 16 19 C 0.09 2.25 11.17 84.62 0.95 3.19 16 20 N -0.53 -17.82 9.43 -192.21 -1.81 -19.64 16 21 C 0.04 1.59 5.87 44.99 0.26 1.86 16 22 C -0.17 -5.82 9.80 30.62 0.30 -5.52 16 23 C -0.18 -5.62 10.36 30.62 0.32 -5.30 16 24 H 0.26 15.65 8.32 -92.70 -0.77 14.88 16 25 H 0.10 3.53 7.56 -2.39 -0.02 3.52 16 26 H 0.11 3.70 8.11 -2.38 -0.02 3.69 16 27 H 0.07 3.11 8.10 -2.39 -0.02 3.09 16 28 H 0.06 2.88 8.10 -2.39 -0.02 2.87 16 29 H 0.16 2.56 8.06 -2.91 -0.02 2.54 16 30 H 0.18 1.20 8.06 -2.91 -0.02 1.18 16 31 H 0.17 1.53 8.06 -2.91 -0.02 1.51 16 32 H 0.17 3.51 8.06 -2.91 -0.02 3.49 16 33 H 0.13 4.21 6.96 -2.39 -0.02 4.20 16 34 H 0.08 3.19 6.73 -2.38 -0.02 3.18 16 35 H 0.12 3.21 8.14 -2.39 -0.02 3.19 16 36 H 0.13 2.95 8.14 -2.39 -0.02 2.93 16 37 H 0.07 2.60 8.14 -2.39 -0.02 2.58 16 Total: -1.00 -79.79 330.78 3.72 -76.07 By element: Atomic # 1 Polarization: 19.23 SS G_CDS: 1.07 Total: 20.30 kcal Atomic # 6 Polarization: -12.12 SS G_CDS: 5.20 Total: -6.92 kcal Atomic # 7 Polarization: -94.99 SS G_CDS: -3.29 Total: -98.29 kcal Atomic # 8 Polarization: -36.77 SS G_CDS: -0.04 Total: -36.82 kcal Atomic # 14 Polarization: 46.89 SS G_CDS: 2.03 Total: 48.92 kcal Atomic # 16 Polarization: -2.03 SS G_CDS: -1.24 Total: -3.27 kcal Total: -79.79 3.72 -76.07 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000446020517.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 91.000 kcal (2) G-P(sol) polarization free energy of solvation -79.789 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 11.210 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.721 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.069 kcal (6) G-S(sol) free energy of system = (1) + (5) 14.931 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds