Wall clock time and date at job start Tue Mar 31 2020 06:43:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.52995 * 109.47227 * 2 1 4 4 C 1.50693 * 109.47512 * 239.99720 * 2 1 3 5 5 H 1.08007 * 120.00080 * 240.00307 * 4 2 1 6 6 C 1.37879 * 120.00237 * 59.99739 * 4 2 1 7 7 N 1.31522 * 119.99342 * 0.02562 * 6 4 2 8 8 Si 1.86792 * 120.00483 * 179.97438 * 6 4 2 9 9 H 1.48500 * 109.47128 * 90.00193 * 8 6 4 10 10 H 1.48497 * 109.47672 * 210.00641 * 8 6 4 11 11 H 1.48497 * 109.47159 * 330.00791 * 8 6 4 12 12 C 1.53007 * 109.46804 * 120.00001 * 2 1 3 13 13 N 1.46500 * 109.46937 * 299.99973 * 12 2 1 14 14 C 1.34774 * 120.00328 * 180.02562 * 13 12 2 15 15 O 1.21739 * 119.99660 * 0.02562 * 14 13 12 16 16 C 1.46449 * 120.00436 * 180.02562 * 14 13 12 17 17 C 1.37472 * 125.80684 * 180.58325 * 16 14 13 18 18 C 1.40657 * 107.55602 * 180.02562 * 17 16 14 19 19 S 1.76023 * 142.39754 * 179.34221 * 18 17 16 20 20 C 1.75594 * 91.31118 * 180.02562 * 19 18 17 21 21 C 1.32778 * 110.47257 * 359.97438 * 20 19 18 22 22 C 1.38244 * 108.03129 * 359.60893 * 18 17 16 23 23 N 1.37916 * 125.80579 * 0.02562 * 16 14 13 24 24 H 0.97001 * 125.68258 * 0.07122 * 23 16 14 25 25 H 1.08996 * 109.47092 * 300.00300 * 1 2 3 26 26 H 1.08998 * 109.46586 * 60.00312 * 1 2 3 27 27 H 1.09001 * 109.46954 * 180.02562 * 1 2 3 28 28 H 1.08998 * 109.47344 * 179.97438 * 3 2 1 29 29 H 1.08993 * 109.47318 * 299.99810 * 3 2 1 30 30 H 1.09005 * 109.47295 * 59.99916 * 3 2 1 31 31 H 0.97004 * 119.99430 * 179.97438 * 7 6 4 32 32 H 1.08998 * 109.47200 * 180.02562 * 12 2 1 33 33 H 1.08996 * 109.47168 * 59.99907 * 12 2 1 34 34 H 0.97002 * 120.00426 * 359.97438 * 13 12 2 35 35 H 1.08000 * 126.22004 * 359.39042 * 17 16 14 36 36 H 1.07999 * 124.76223 * 180.02562 * 20 19 18 37 37 H 1.08002 * 122.15800 * 179.97438 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 6 2.0324 -0.7104 -1.2303 5 1 2.6534 -1.5886 -1.1312 6 6 1.6994 -0.2395 -2.4827 7 7 0.9436 0.8301 -2.6034 8 14 2.3227 -1.1196 -4.0078 9 1 1.3451 -2.1617 -4.4122 10 1 2.4876 -0.1404 -5.1119 11 1 3.6310 -1.7567 -3.7117 12 6 2.0400 -0.7213 1.2493 13 7 1.5516 -0.0306 2.4454 14 6 1.8775 -0.4907 3.6696 15 8 2.5781 -1.4800 3.7814 16 6 1.3888 0.1994 4.8653 17 6 1.6558 -0.1579 6.1657 18 6 0.9980 0.7621 7.0020 19 16 0.7135 1.1520 8.6948 20 6 -0.2706 2.5373 8.2521 21 6 -0.3452 2.6508 6.9313 22 6 0.3430 1.6775 6.1995 23 7 0.5913 1.3245 4.8783 24 1 0.2589 1.7915 4.0957 25 1 -0.3633 0.5139 0.8899 26 1 -0.3632 0.5138 -0.8900 27 1 -0.3633 -1.0277 0.0005 28 1 3.1300 1.4425 0.0005 29 1 1.6768 1.9563 -0.8899 30 1 1.6767 1.9563 0.8900 31 1 0.7096 1.1616 -3.4844 32 1 3.1299 -0.7209 1.2496 33 1 1.6766 -1.7489 1.2493 34 1 0.9942 0.7583 2.3565 35 1 2.2527 -0.9987 6.4868 36 1 -0.7474 3.2039 8.9554 37 1 -0.9057 3.4404 6.4529 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000457987099.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:43:01 Heat of formation + Delta-G solvation = 25.088447 kcal Electronic energy + Delta-G solvation = -20501.011881 eV Core-core repulsion = 17370.437703 eV Total energy + Delta-G solvation = -3130.574178 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 292.099 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -41.37640 -39.03986 -36.47691 -35.38241 -33.45969 -31.19953 -30.80262 -28.46140 -25.83586 -25.76841 -25.08029 -23.41866 -22.20659 -20.51823 -19.82037 -18.90034 -18.61853 -16.61571 -15.88891 -15.58366 -15.31856 -15.24727 -14.75101 -14.31750 -14.26575 -13.81150 -13.53533 -12.98326 -12.88932 -12.86662 -12.29850 -11.99749 -11.72857 -11.46804 -11.28771 -11.00145 -10.93482 -10.75505 -10.48925 -10.28533 -9.92400 -9.84617 -9.74221 -9.40732 -8.88651 -8.65276 -8.43787 -8.15931 -7.78619 -6.09174 -4.19368 0.66691 1.40177 1.92657 1.93506 2.62399 2.76633 3.24528 3.31754 3.35162 3.51334 3.54226 4.34957 4.61330 4.83854 4.95385 5.18049 5.20376 5.39407 5.61371 5.81370 5.85548 6.09818 6.21955 6.35501 6.38511 6.54837 6.63851 6.68914 6.82063 6.84125 6.91441 7.18540 7.24920 7.45375 7.61813 7.84022 7.91218 8.04817 8.28936 8.44336 8.81180 9.46975 10.92434 Molecular weight = 292.10amu Principal moments of inertia in cm(-1) A = 0.040345 B = 0.003087 C = 0.002925 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 693.845348 B = 9067.166823 C = 9569.945934 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.131 4.131 2 C 0.056 3.944 3 C -0.131 4.131 4 C -0.507 4.507 5 H 0.059 0.941 6 C 0.066 3.934 7 N -0.886 5.886 8 Si 0.895 3.105 9 H -0.281 1.281 10 H -0.287 1.287 11 H -0.274 1.274 12 C 0.131 3.869 13 N -0.712 5.712 14 C 0.574 3.426 15 O -0.531 6.531 16 C 0.021 3.979 17 C -0.081 4.081 18 C -0.216 4.216 19 S 0.123 5.877 20 C -0.194 4.194 21 C -0.111 4.111 22 C 0.059 3.941 23 N -0.540 5.540 24 H 0.420 0.580 25 H 0.002 0.998 26 H 0.087 0.913 27 H 0.028 0.972 28 H 0.028 0.972 29 H 0.087 0.913 30 H 0.002 0.998 31 H 0.260 0.740 32 H 0.060 0.940 33 H 0.060 0.940 34 H 0.393 0.607 35 H 0.156 0.844 36 H 0.171 0.829 37 H 0.141 0.859 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.875 5.471 18.197 19.392 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.189 4.189 2 C 0.055 3.945 3 C -0.189 4.189 4 C -0.546 4.546 5 H 0.077 0.923 6 C -0.135 4.135 7 N -0.525 5.525 8 Si 0.723 3.277 9 H -0.207 1.207 10 H -0.212 1.212 11 H -0.198 1.198 12 C 0.009 3.991 13 N -0.362 5.362 14 C 0.360 3.640 15 O -0.409 6.409 16 C -0.094 4.094 17 C -0.112 4.112 18 C -0.336 4.336 19 S 0.383 5.617 20 C -0.329 4.329 21 C -0.144 4.144 22 C -0.060 4.060 23 N -0.142 5.142 24 H 0.259 0.741 25 H 0.021 0.979 26 H 0.106 0.894 27 H 0.047 0.953 28 H 0.048 0.952 29 H 0.106 0.894 30 H 0.021 0.979 31 H 0.071 0.929 32 H 0.078 0.922 33 H 0.078 0.922 34 H 0.228 0.772 35 H 0.174 0.826 36 H 0.188 0.812 37 H 0.158 0.842 Dipole moment (debyes) X Y Z Total from point charges -3.048 4.305 19.278 19.987 hybrid contribution -0.654 0.906 -2.661 2.886 sum -3.701 5.211 16.617 17.804 Atomic orbital electron populations 1.21845 0.97758 0.99318 0.99954 1.18371 0.92780 0.92767 0.90569 1.21842 0.98767 0.98306 0.99952 1.20970 1.31627 1.12191 0.89776 0.92285 1.24883 0.94797 0.94890 0.98923 1.69799 1.36669 1.22697 1.23330 0.86543 0.79371 0.79376 0.82445 1.20667 1.21242 1.19836 1.21831 0.98480 0.95945 0.82855 1.46251 1.52313 1.31515 1.06083 1.17007 0.80989 0.84087 0.81954 1.90851 1.38199 1.25601 1.86207 1.20625 1.01553 0.91606 0.95646 1.20392 1.02313 1.00053 0.88415 1.22669 1.09965 1.03876 0.97096 1.83854 1.51302 1.25349 1.01241 1.25187 1.06273 1.03227 0.98253 1.18912 1.03034 0.99741 0.92731 1.18343 1.04479 0.99307 0.83859 1.42043 1.42208 1.24038 1.05921 0.74131 0.97855 0.89448 0.95252 0.95246 0.89446 0.97858 0.92945 0.92191 0.92189 0.77247 0.82641 0.81156 0.84170 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.85 8.08 37.16 0.30 -2.55 16 2 C 0.06 1.25 0.50 -155.66 -0.08 1.17 16 3 C -0.13 -2.85 8.08 37.16 0.30 -2.55 16 4 C -0.51 -12.97 8.01 -34.44 -0.28 -13.25 16 5 H 0.06 1.52 7.74 -52.48 -0.41 1.12 16 6 C 0.07 1.71 5.15 -17.82 -0.09 1.62 16 7 N -0.89 -23.11 9.35 55.43 0.52 -22.59 16 8 Si 0.89 20.39 29.54 -169.99 -5.02 15.37 16 9 H -0.28 -6.40 7.11 56.52 0.40 -6.00 16 10 H -0.29 -6.52 7.11 56.52 0.40 -6.12 16 11 H -0.27 -6.24 7.11 56.52 0.40 -5.84 16 12 C 0.13 2.69 4.50 -4.04 -0.02 2.67 16 13 N -0.71 -12.29 4.95 -61.68 -0.31 -12.59 16 14 C 0.57 10.09 7.78 -12.96 -0.10 9.99 16 15 O -0.53 -11.05 16.86 5.15 0.09 -10.96 16 16 C 0.02 0.31 7.01 -82.10 -0.58 -0.26 16 17 C -0.08 -1.16 10.60 -38.95 -0.41 -1.57 16 18 C -0.22 -2.79 7.26 -38.67 -0.28 -3.07 16 19 S 0.12 1.23 23.31 -107.50 -2.51 -1.28 16 20 C -0.19 -1.62 11.13 28.86 0.32 -1.30 16 21 C -0.11 -1.05 10.16 -40.84 -0.42 -1.47 16 22 C 0.06 0.71 7.67 -84.00 -0.64 0.06 16 23 N -0.54 -6.61 6.14 -7.34 -0.05 -6.65 16 24 H 0.42 4.17 8.14 -40.82 -0.33 3.84 16 25 H 0.00 0.05 6.86 -51.93 -0.36 -0.31 16 26 H 0.09 2.11 6.07 -51.93 -0.32 1.80 16 27 H 0.03 0.64 8.14 -51.93 -0.42 0.21 16 28 H 0.03 0.64 8.14 -51.93 -0.42 0.21 16 29 H 0.09 2.11 6.07 -51.93 -0.32 1.80 16 30 H 0.00 0.05 6.86 -51.93 -0.36 -0.31 16 31 H 0.26 6.57 8.31 -40.82 -0.34 6.23 16 32 H 0.06 1.29 8.14 -51.93 -0.42 0.87 16 33 H 0.06 1.29 8.14 -51.93 -0.42 0.87 16 34 H 0.39 5.98 5.24 -40.82 -0.21 5.76 16 35 H 0.16 2.10 8.06 -52.49 -0.42 1.67 16 36 H 0.17 0.90 8.06 -52.49 -0.42 0.48 16 37 H 0.14 1.00 8.06 -52.49 -0.42 0.58 16 LS Contribution 319.45 15.07 4.81 4.81 Total: -1.00 -28.72 319.45 -8.82 -37.54 By element: Atomic # 1 Polarization: 11.24 SS G_CDS: -4.39 Total: 6.85 kcal Atomic # 6 Polarization: -8.53 SS G_CDS: -1.97 Total: -10.51 kcal Atomic # 7 Polarization: -42.00 SS G_CDS: 0.17 Total: -41.83 kcal Atomic # 8 Polarization: -11.05 SS G_CDS: 0.09 Total: -10.96 kcal Atomic # 14 Polarization: 20.39 SS G_CDS: -5.02 Total: 15.37 kcal Atomic # 16 Polarization: 1.23 SS G_CDS: -2.51 Total: -1.28 kcal Total LS contribution 4.81 Total: 4.81 kcal Total: -28.72 -8.82 -37.54 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000457987099.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 62.632 kcal (2) G-P(sol) polarization free energy of solvation -28.723 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 33.909 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.820 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.544 kcal (6) G-S(sol) free energy of system = (1) + (5) 25.088 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds