Wall clock time and date at job start Tue Mar 31 2020 06:43:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.52995 * 109.47227 * 2 1 4 4 C 1.50693 * 109.47512 * 239.99720 * 2 1 3 5 5 H 1.08007 * 120.00080 * 240.00307 * 4 2 1 6 6 C 1.37879 * 120.00237 * 59.99739 * 4 2 1 7 7 N 1.31522 * 119.99342 * 0.02562 * 6 4 2 8 8 Si 1.86792 * 120.00483 * 179.97438 * 6 4 2 9 9 H 1.48500 * 109.47128 * 90.00193 * 8 6 4 10 10 H 1.48497 * 109.47672 * 210.00641 * 8 6 4 11 11 H 1.48497 * 109.47159 * 330.00791 * 8 6 4 12 12 C 1.53007 * 109.46804 * 120.00001 * 2 1 3 13 13 N 1.46500 * 109.46937 * 299.99973 * 12 2 1 14 14 C 1.34774 * 120.00328 * 180.02562 * 13 12 2 15 15 O 1.21739 * 119.99660 * 0.02562 * 14 13 12 16 16 C 1.46449 * 120.00436 * 180.02562 * 14 13 12 17 17 C 1.37472 * 125.80684 * 180.58325 * 16 14 13 18 18 C 1.40657 * 107.55602 * 180.02562 * 17 16 14 19 19 S 1.76023 * 142.39754 * 179.34221 * 18 17 16 20 20 C 1.75594 * 91.31118 * 180.02562 * 19 18 17 21 21 C 1.32778 * 110.47257 * 359.97438 * 20 19 18 22 22 C 1.38244 * 108.03129 * 359.60893 * 18 17 16 23 23 N 1.37916 * 125.80579 * 0.02562 * 16 14 13 24 24 H 0.97001 * 125.68258 * 0.07122 * 23 16 14 25 25 H 1.08996 * 109.47092 * 300.00300 * 1 2 3 26 26 H 1.08998 * 109.46586 * 60.00312 * 1 2 3 27 27 H 1.09001 * 109.46954 * 180.02562 * 1 2 3 28 28 H 1.08998 * 109.47344 * 179.97438 * 3 2 1 29 29 H 1.08993 * 109.47318 * 299.99810 * 3 2 1 30 30 H 1.09005 * 109.47295 * 59.99916 * 3 2 1 31 31 H 0.97004 * 119.99430 * 179.97438 * 7 6 4 32 32 H 1.08998 * 109.47200 * 180.02562 * 12 2 1 33 33 H 1.08996 * 109.47168 * 59.99907 * 12 2 1 34 34 H 0.97002 * 120.00426 * 359.97438 * 13 12 2 35 35 H 1.08000 * 126.22004 * 359.39042 * 17 16 14 36 36 H 1.07999 * 124.76223 * 180.02562 * 20 19 18 37 37 H 1.08002 * 122.15800 * 179.97438 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 6 2.0324 -0.7104 -1.2303 5 1 2.6534 -1.5886 -1.1312 6 6 1.6994 -0.2395 -2.4827 7 7 0.9436 0.8301 -2.6034 8 14 2.3227 -1.1196 -4.0078 9 1 1.3451 -2.1617 -4.4122 10 1 2.4876 -0.1404 -5.1119 11 1 3.6310 -1.7567 -3.7117 12 6 2.0400 -0.7213 1.2493 13 7 1.5516 -0.0306 2.4454 14 6 1.8775 -0.4907 3.6696 15 8 2.5781 -1.4800 3.7814 16 6 1.3888 0.1994 4.8653 17 6 1.6558 -0.1579 6.1657 18 6 0.9980 0.7621 7.0020 19 16 0.7135 1.1520 8.6948 20 6 -0.2706 2.5373 8.2521 21 6 -0.3452 2.6508 6.9313 22 6 0.3430 1.6775 6.1995 23 7 0.5913 1.3245 4.8783 24 1 0.2589 1.7915 4.0957 25 1 -0.3633 0.5139 0.8899 26 1 -0.3632 0.5138 -0.8900 27 1 -0.3633 -1.0277 0.0005 28 1 3.1300 1.4425 0.0005 29 1 1.6768 1.9563 -0.8899 30 1 1.6767 1.9563 0.8900 31 1 0.7096 1.1616 -3.4844 32 1 3.1299 -0.7209 1.2496 33 1 1.6766 -1.7489 1.2493 34 1 0.9942 0.7583 2.3565 35 1 2.2527 -0.9987 6.4868 36 1 -0.7474 3.2039 8.9554 37 1 -0.9057 3.4404 6.4529 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000457987099.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:43:00 Heat of formation + Delta-G solvation = 8.004983 kcal Electronic energy + Delta-G solvation = -20501.752676 eV Core-core repulsion = 17370.437703 eV Total energy + Delta-G solvation = -3131.314973 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 292.099 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -42.39050 -40.45052 -38.17819 -36.23666 -35.12110 -32.86556 -31.94663 -29.56021 -27.61282 -27.48899 -26.77925 -24.37197 -23.35681 -21.50488 -21.07792 -20.55767 -19.74621 -17.97838 -17.50134 -16.79870 -16.61083 -16.54274 -16.35608 -15.52151 -15.24205 -15.02837 -14.83161 -14.56754 -14.50488 -14.09343 -13.82127 -13.25311 -13.13989 -12.81490 -12.73827 -12.62391 -12.53441 -12.29334 -12.16187 -11.74591 -11.53602 -11.47849 -11.15494 -10.77183 -10.74672 -10.42999 -10.14055 -9.10168 -8.64001 -8.05048 -6.20503 -0.24487 0.59259 0.86318 1.16696 1.41759 1.45103 1.52899 1.77569 1.79134 2.16951 2.21992 2.46438 3.19198 3.72626 3.82974 4.00419 4.33849 4.41366 4.46367 4.55304 4.65557 4.77157 4.92520 4.95518 4.98903 5.06093 5.09395 5.14540 5.23015 5.43162 5.46561 5.57427 5.62777 5.65421 6.11121 6.16518 6.28368 6.39921 6.50045 6.83037 7.05060 7.47480 8.94030 Molecular weight = 292.10amu Principal moments of inertia in cm(-1) A = 0.040345 B = 0.003087 C = 0.002925 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 693.845348 B = 9067.166823 C = 9569.945934 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.122 4.122 2 C 0.052 3.948 3 C -0.122 4.122 4 C -0.530 4.530 5 H 0.046 0.954 6 C 0.029 3.971 7 N -0.899 5.899 8 Si 0.945 3.055 9 H -0.279 1.279 10 H -0.283 1.283 11 H -0.276 1.276 12 C 0.146 3.854 13 N -0.704 5.704 14 C 0.579 3.421 15 O -0.571 6.571 16 C -0.004 4.004 17 C -0.084 4.084 18 C -0.252 4.252 19 S 0.134 5.866 20 C -0.167 4.167 21 C -0.130 4.130 22 C 0.069 3.931 23 N -0.532 5.532 24 H 0.430 0.570 25 H 0.035 0.965 26 H 0.064 0.936 27 H 0.019 0.981 28 H 0.019 0.981 29 H 0.064 0.936 30 H 0.035 0.965 31 H 0.261 0.739 32 H 0.045 0.955 33 H 0.045 0.955 34 H 0.405 0.595 35 H 0.152 0.848 36 H 0.209 0.791 37 H 0.169 0.831 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.146 7.252 20.008 21.895 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.180 4.180 2 C 0.051 3.949 3 C -0.179 4.179 4 C -0.568 4.568 5 H 0.064 0.936 6 C -0.171 4.171 7 N -0.538 5.538 8 Si 0.772 3.228 9 H -0.205 1.205 10 H -0.209 1.209 11 H -0.201 1.201 12 C 0.023 3.977 13 N -0.354 5.354 14 C 0.367 3.633 15 O -0.451 6.451 16 C -0.119 4.119 17 C -0.115 4.115 18 C -0.372 4.372 19 S 0.393 5.607 20 C -0.303 4.303 21 C -0.162 4.162 22 C -0.051 4.051 23 N -0.136 5.136 24 H 0.271 0.729 25 H 0.054 0.946 26 H 0.083 0.917 27 H 0.038 0.962 28 H 0.038 0.962 29 H 0.083 0.917 30 H 0.054 0.946 31 H 0.070 0.930 32 H 0.063 0.937 33 H 0.064 0.936 34 H 0.241 0.759 35 H 0.170 0.830 36 H 0.226 0.774 37 H 0.186 0.814 Dipole moment (debyes) X Y Z Total from point charges -4.335 6.108 21.077 22.369 hybrid contribution -0.301 0.411 -3.046 3.089 sum -4.636 6.520 18.031 19.726 Atomic orbital electron populations 1.21688 0.97068 0.98812 1.00385 1.18360 0.93270 0.93045 0.90194 1.21686 0.98085 0.97796 1.00382 1.21270 1.31817 1.12263 0.91479 0.93556 1.25436 0.95111 0.95561 1.00946 1.69899 1.36993 1.23205 1.23655 0.85759 0.78684 0.78486 0.79891 1.20518 1.20851 1.20068 1.21406 0.97476 0.95322 0.83512 1.45989 1.52488 1.31707 1.05212 1.17273 0.80050 0.83507 0.82472 1.90821 1.40051 1.27466 1.86809 1.20047 1.04081 0.93385 0.94383 1.20517 1.01972 1.00157 0.88841 1.22936 1.10897 1.04241 0.99080 1.83874 1.51506 1.26123 0.99191 1.25738 1.03985 1.02006 0.98539 1.19215 1.03808 1.00218 0.92976 1.18870 1.03464 0.99251 0.83508 1.41923 1.41705 1.23296 1.06676 0.72933 0.94612 0.91701 0.96185 0.96177 0.91699 0.94618 0.92992 0.93660 0.93632 0.75853 0.83007 0.77374 0.81371 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -5.24 8.08 71.98 0.58 -4.65 16 2 C 0.05 2.34 0.50 -52.93 -0.03 2.31 16 3 C -0.12 -5.23 8.08 71.98 0.58 -4.65 16 4 C -0.53 -27.54 8.01 25.60 0.21 -27.33 16 5 H 0.05 2.46 7.74 -2.91 -0.02 2.44 16 6 C 0.03 1.52 5.15 84.65 0.44 1.96 16 7 N -0.90 -47.01 9.35 21.45 0.20 -46.81 16 8 Si 0.94 42.08 29.54 68.60 2.03 44.11 16 9 H -0.28 -12.31 7.11 99.48 0.71 -11.60 16 10 H -0.28 -12.36 7.11 99.48 0.71 -11.65 16 11 H -0.28 -12.27 7.11 99.48 0.71 -11.57 16 12 C 0.15 6.09 4.50 86.38 0.39 6.48 16 13 N -0.70 -24.03 4.95 -467.27 -2.31 -26.35 16 14 C 0.58 20.53 7.78 86.38 0.67 21.20 16 15 O -0.57 -24.50 16.86 -4.47 -0.08 -24.57 16 16 C 0.00 -0.13 7.01 40.15 0.28 0.15 16 17 C -0.08 -2.39 10.60 22.68 0.24 -2.15 16 18 C -0.25 -6.15 7.26 22.86 0.17 -5.98 16 19 S 0.13 2.32 23.31 -56.49 -1.32 1.00 16 20 C -0.17 -2.06 11.13 66.64 0.74 -1.32 16 21 C -0.13 -1.95 10.16 21.49 0.22 -1.73 16 22 C 0.07 1.51 7.67 38.40 0.29 1.81 16 23 N -0.53 -12.14 6.14 -177.14 -1.09 -13.23 16 24 H 0.43 7.59 8.14 -92.71 -0.75 6.83 16 25 H 0.03 1.26 6.86 -2.39 -0.02 1.24 16 26 H 0.06 3.11 6.07 -2.39 -0.01 3.10 16 27 H 0.02 0.85 8.14 -2.39 -0.02 0.83 16 28 H 0.02 0.85 8.14 -2.39 -0.02 0.84 16 29 H 0.06 3.11 6.07 -2.39 -0.01 3.10 16 30 H 0.03 1.26 6.86 -2.38 -0.02 1.24 16 31 H 0.26 13.15 8.31 -92.71 -0.77 12.38 16 32 H 0.04 2.00 8.14 -2.39 -0.02 1.99 16 33 H 0.05 2.01 8.14 -2.39 -0.02 2.00 16 34 H 0.40 11.69 5.24 -92.71 -0.49 11.21 16 35 H 0.15 4.24 8.06 -2.91 -0.02 4.22 16 36 H 0.21 0.96 8.06 -2.91 -0.02 0.94 16 37 H 0.17 1.59 8.06 -2.91 -0.02 1.56 16 Total: -1.00 -62.75 319.45 2.09 -60.66 By element: Atomic # 1 Polarization: 19.21 SS G_CDS: -0.12 Total: 19.09 kcal Atomic # 6 Polarization: -18.69 SS G_CDS: 4.78 Total: -13.91 kcal Atomic # 7 Polarization: -83.18 SS G_CDS: -3.20 Total: -86.39 kcal Atomic # 8 Polarization: -24.50 SS G_CDS: -0.08 Total: -24.57 kcal Atomic # 14 Polarization: 42.08 SS G_CDS: 2.03 Total: 44.11 kcal Atomic # 16 Polarization: 2.32 SS G_CDS: -1.32 Total: 1.00 kcal Total: -62.75 2.09 -60.66 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000457987099.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 68.665 kcal (2) G-P(sol) polarization free energy of solvation -62.751 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 5.915 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.090 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.660 kcal (6) G-S(sol) free energy of system = (1) + (5) 8.005 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds