Wall clock time and date at job start Tue Mar 31 2020 06:36:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17403 * 1 3 3 C 1.47192 * 179.97438 * 2 1 4 4 N 1.46499 * 109.47354 * 267.04353 * 3 2 1 5 5 C 1.36894 * 119.99860 * 262.98178 * 4 3 2 6 6 H 1.07991 * 120.00437 * 200.83763 * 5 4 3 7 7 C 1.39011 * 119.99624 * 20.83297 * 5 4 3 8 8 N 1.31401 * 120.00150 * 22.47167 * 7 5 4 9 9 Si 1.86801 * 119.99714 * 202.46376 * 7 5 4 10 10 H 1.48501 * 109.47076 * 60.00843 * 9 7 5 11 11 H 1.48503 * 109.46933 * 180.02562 * 9 7 5 12 12 H 1.48491 * 109.47460 * 300.00267 * 9 7 5 13 13 C 1.34777 * 120.00247 * 82.97914 * 4 3 2 14 14 O 1.21727 * 119.99621 * 184.13047 * 13 4 3 15 15 C 1.46562 * 119.99698 * 4.13407 * 13 4 3 16 16 S 1.76210 * 126.18123 * 344.70715 * 15 13 4 17 17 C 1.70923 * 90.37254 * 180.02562 * 16 15 13 18 18 C 1.50699 * 124.70071 * 179.97438 * 17 16 15 19 19 C 1.52999 * 109.47372 * 239.72606 * 18 17 16 20 20 C 1.53006 * 109.47200 * 119.72518 * 18 17 16 21 21 N 1.29373 * 110.59552 * 359.66616 * 17 16 15 22 22 C 1.30940 * 117.47031 * 0.26604 * 21 17 16 23 23 C 1.50696 * 123.04369 * 179.97438 * 22 21 17 24 24 H 4.40635 * 5.51482 * 179.97438 * 4 1 2 25 25 H 1.08999 * 109.47471 * 147.04041 * 3 2 1 26 26 H 1.09002 * 109.47216 * 27.04246 * 3 2 1 27 27 H 0.97002 * 119.99946 * 179.97438 * 8 7 5 28 28 H 1.09001 * 109.47352 * 359.72673 * 18 17 16 29 29 H 1.09001 * 109.46937 * 300.00321 * 19 18 17 30 30 H 1.08997 * 109.47709 * 180.02562 * 19 18 17 31 31 H 1.08996 * 109.47242 * 59.99704 * 19 18 17 32 32 H 1.08998 * 109.46977 * 179.97438 * 20 18 17 33 33 H 1.08999 * 109.47069 * 299.99696 * 20 18 17 34 34 H 1.09001 * 109.46841 * 59.99842 * 20 18 17 35 35 H 1.09000 * 109.47196 * 90.02104 * 23 22 21 36 36 H 1.08996 * 109.47190 * 210.02410 * 23 22 21 37 37 H 1.09004 * 109.46806 * 330.02369 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1740 0.0000 0.0000 3 6 2.6460 0.0007 0.0000 4 7 3.1343 0.0721 1.3793 5 6 3.4985 1.2782 1.9149 6 1 4.1557 1.3125 2.7711 7 6 3.0225 2.4588 1.3563 8 7 1.9219 2.4490 0.6385 9 14 3.9472 4.0592 1.6265 10 1 5.3230 3.9339 1.0817 11 1 3.2381 5.1639 0.9321 12 1 4.0154 4.3521 3.0806 13 6 3.2250 -1.0495 2.1211 14 8 3.5588 -0.9809 3.2897 15 6 2.9218 -2.3516 1.5207 16 16 2.0766 -2.6238 -0.0014 17 6 2.2321 -4.3138 0.2016 18 6 1.7147 -5.3454 -0.7674 19 6 0.7063 -6.2513 -0.0578 20 6 2.8814 -6.1888 -1.2857 21 7 2.8612 -4.5843 1.2992 22 6 3.2496 -3.5750 2.0373 23 6 3.9904 -3.7456 3.3385 24 1 -1.0500 0.0002 0.0000 25 1 3.0090 0.8631 -0.5591 26 1 3.0097 -0.9145 -0.4672 27 1 1.5895 3.2729 0.2490 28 1 1.2276 -4.8455 -1.6047 29 1 1.1934 -6.7512 0.7795 30 1 0.3324 -6.9978 -0.7585 31 1 -0.1248 -5.6506 0.3114 32 1 2.5070 -6.9352 -1.9863 33 1 3.5997 -5.5435 -1.7914 34 1 3.3684 -6.6887 -0.4485 35 1 5.0632 -3.7606 3.1465 36 1 3.7519 -2.9158 4.0038 37 1 3.6917 -4.6838 3.8062 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000490995979.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:36:06 Heat of formation + Delta-G solvation = 68.930175 kcal Electronic energy + Delta-G solvation = -21240.786565 eV Core-core repulsion = 18112.113506 eV Total energy + Delta-G solvation = -3128.673058 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 292.099 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -39.59655 -38.49813 -35.54081 -35.07476 -32.42414 -31.42760 -30.49690 -27.96295 -27.15439 -26.63925 -24.96754 -24.51020 -21.24748 -20.45309 -18.20914 -18.02957 -17.21239 -16.79743 -15.94263 -15.20524 -14.87157 -14.72951 -14.23285 -13.96865 -13.87951 -13.37996 -13.10555 -12.97949 -12.51522 -12.31578 -12.18351 -11.96458 -11.80328 -11.77302 -11.37471 -11.13176 -11.12229 -10.98284 -10.76184 -10.62440 -10.50418 -9.60971 -9.53579 -9.23944 -9.00163 -8.63906 -8.43835 -8.16095 -7.89173 -6.54340 -4.01379 0.88367 1.82830 2.23017 3.02448 3.15754 3.16013 3.18753 3.60202 3.88523 4.04793 4.13370 4.35121 4.78979 4.92014 4.93417 5.11163 5.11821 5.26972 5.57605 5.62177 5.65994 5.73303 5.81359 5.84666 5.93435 6.06820 6.16647 6.21896 6.23115 6.39553 6.45405 6.45951 6.84179 6.95187 7.36800 7.85022 8.21394 8.26801 8.66214 8.93462 9.11152 9.71860 10.45395 Molecular weight = 292.10amu Principal moments of inertia in cm(-1) A = 0.023890 B = 0.005363 C = 0.004702 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1171.761392 B = 5219.232830 C = 5953.148121 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.232 4.232 2 C -0.125 4.125 3 C 0.219 3.781 4 N -0.420 5.420 5 C -0.309 4.309 6 H 0.109 0.891 7 C 0.034 3.966 8 N -0.846 5.846 9 Si 0.926 3.074 10 H -0.270 1.270 11 H -0.283 1.283 12 H -0.270 1.270 13 C 0.512 3.488 14 O -0.568 6.568 15 C -0.255 4.255 16 S 0.185 5.815 17 C -0.006 4.006 18 C -0.012 4.012 19 C -0.138 4.138 20 C -0.138 4.138 21 N -0.472 5.472 22 C 0.104 3.896 23 C -0.081 4.081 24 H 0.203 0.797 25 H 0.116 0.884 26 H 0.070 0.930 27 H 0.274 0.726 28 H 0.083 0.917 29 H 0.065 0.935 30 H 0.059 0.941 31 H 0.054 0.946 32 H 0.059 0.941 33 H 0.054 0.946 34 H 0.065 0.935 35 H 0.067 0.933 36 H 0.102 0.898 37 H 0.062 0.938 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.394 -10.394 -6.989 12.603 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.251 4.251 2 C -0.128 4.128 3 C 0.094 3.906 4 N -0.136 5.136 5 C -0.437 4.437 6 H 0.127 0.873 7 C -0.173 4.173 8 N -0.482 5.482 9 Si 0.752 3.248 10 H -0.196 1.196 11 H -0.208 1.208 12 H -0.195 1.195 13 C 0.302 3.698 14 O -0.453 6.453 15 C -0.380 4.380 16 S 0.446 5.554 17 C -0.280 4.280 18 C -0.034 4.034 19 C -0.197 4.197 20 C -0.197 4.197 21 N -0.186 5.186 22 C -0.034 4.034 23 C -0.140 4.140 24 H 0.220 0.780 25 H 0.134 0.866 26 H 0.087 0.913 27 H 0.084 0.916 28 H 0.102 0.898 29 H 0.084 0.916 30 H 0.078 0.922 31 H 0.073 0.927 32 H 0.078 0.922 33 H 0.073 0.927 34 H 0.084 0.916 35 H 0.086 0.914 36 H 0.121 0.879 37 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges -1.703 -10.119 -7.208 12.540 hybrid contribution 0.353 0.874 0.717 1.184 sum -1.350 -9.245 -6.491 11.377 Atomic orbital electron populations 1.24263 0.95279 1.04891 1.00645 1.22703 0.94047 0.96390 0.99676 1.18489 0.85233 1.00979 0.85857 1.43605 1.54074 1.06618 1.09335 1.19695 1.27073 0.80754 1.16175 0.87295 1.25439 0.94889 0.99867 0.97091 1.70080 1.16489 1.29269 1.32348 0.85991 0.79606 0.80099 0.79122 1.19565 1.20792 1.19509 1.16536 0.85567 0.81798 0.85931 1.90599 1.54154 1.85283 1.15307 1.26122 1.11467 1.00062 1.00322 1.84641 1.51886 0.99524 1.19366 1.27518 1.02551 1.00227 0.97706 1.19712 0.96424 0.93067 0.94209 1.21775 0.98207 0.98887 1.00790 1.21782 0.97361 0.99305 1.01207 1.65829 1.12945 1.35248 1.04618 1.20665 0.99245 0.85441 0.98052 1.20516 0.98284 1.03522 0.91712 0.78008 0.86609 0.91277 0.91571 0.89824 0.91633 0.92156 0.92653 0.92170 0.92671 0.91618 0.91397 0.87926 0.91890 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.23 -4.61 19.25 29.55 0.57 -4.04 16 2 C -0.13 -2.71 8.90 -37.13 -0.33 -3.04 16 3 C 0.22 4.82 4.73 -6.83 -0.03 4.79 16 4 N -0.42 -10.62 2.59 -119.47 -0.31 -10.93 16 5 C -0.31 -8.23 9.22 -15.01 -0.14 -8.37 16 6 H 0.11 3.01 7.48 -52.49 -0.39 2.62 16 7 C 0.03 0.85 4.80 -17.45 -0.08 0.77 16 8 N -0.85 -21.26 9.72 55.50 0.54 -20.72 16 9 Si 0.93 19.46 29.61 -169.99 -5.03 14.42 16 10 H -0.27 -5.58 7.11 56.52 0.40 -5.18 16 11 H -0.28 -5.83 7.11 56.52 0.40 -5.43 16 12 H -0.27 -5.77 7.11 56.52 0.40 -5.37 16 13 C 0.51 12.96 7.45 -12.90 -0.10 12.86 16 14 O -0.57 -15.65 14.12 5.16 0.07 -15.58 16 15 C -0.26 -5.53 6.20 -36.75 -0.23 -5.76 16 16 S 0.18 3.27 16.57 -107.50 -1.78 1.49 16 17 C -0.01 -0.09 5.89 -13.31 -0.08 -0.17 16 18 C -0.01 -0.15 3.35 -91.77 -0.31 -0.46 16 19 C -0.14 -1.54 9.17 37.16 0.34 -1.20 16 20 C -0.14 -1.50 9.17 37.16 0.34 -1.16 16 21 N -0.47 -8.67 10.47 -7.47 -0.08 -8.74 16 22 C 0.10 2.09 6.83 -83.50 -0.57 1.52 16 23 C -0.08 -1.49 9.91 36.00 0.36 -1.14 16 24 H 0.20 3.24 7.80 -54.09 -0.42 2.82 16 25 H 0.12 2.60 6.64 -51.93 -0.34 2.25 16 26 H 0.07 1.36 4.65 -24.70 -0.11 1.25 16 27 H 0.27 6.54 8.31 -40.82 -0.34 6.20 16 28 H 0.08 0.90 8.12 -51.93 -0.42 0.48 16 29 H 0.06 0.80 8.14 -51.93 -0.42 0.38 16 30 H 0.06 0.53 8.14 -51.93 -0.42 0.10 16 31 H 0.05 0.64 8.14 -51.93 -0.42 0.22 16 32 H 0.06 0.51 8.14 -51.93 -0.42 0.09 16 33 H 0.05 0.61 8.14 -51.93 -0.42 0.18 16 34 H 0.06 0.79 8.14 -51.93 -0.42 0.36 16 35 H 0.07 1.16 8.14 -51.93 -0.42 0.73 16 36 H 0.10 2.11 5.84 -51.93 -0.30 1.80 16 37 H 0.06 1.01 8.14 -51.93 -0.42 0.59 16 LS Contribution 323.26 15.07 4.87 4.87 Total: -1.00 -29.99 323.26 -6.49 -36.48 By element: Atomic # 1 Polarization: 8.62 SS G_CDS: -4.52 Total: 4.11 kcal Atomic # 6 Polarization: -5.14 SS G_CDS: -0.26 Total: -5.39 kcal Atomic # 7 Polarization: -40.54 SS G_CDS: 0.15 Total: -40.39 kcal Atomic # 8 Polarization: -15.65 SS G_CDS: 0.07 Total: -15.58 kcal Atomic # 14 Polarization: 19.46 SS G_CDS: -5.03 Total: 14.42 kcal Atomic # 16 Polarization: 3.27 SS G_CDS: -1.78 Total: 1.49 kcal Total LS contribution 4.87 Total: 4.87 kcal Total: -29.99 -6.49 -36.48 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000490995979.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 105.409 kcal (2) G-P(sol) polarization free energy of solvation -29.986 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 75.422 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.492 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.478 kcal (6) G-S(sol) free energy of system = (1) + (5) 68.930 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds