Wall clock time and date at job start Tue Mar 31 2020 06:36:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17403 * 1 3 3 C 1.47192 * 179.97438 * 2 1 4 4 N 1.46499 * 109.47354 * 267.04353 * 3 2 1 5 5 C 1.36894 * 119.99860 * 262.98178 * 4 3 2 6 6 H 1.07991 * 120.00437 * 200.83763 * 5 4 3 7 7 C 1.39011 * 119.99624 * 20.83297 * 5 4 3 8 8 N 1.31401 * 120.00150 * 22.47167 * 7 5 4 9 9 Si 1.86801 * 119.99714 * 202.46376 * 7 5 4 10 10 H 1.48501 * 109.47076 * 60.00843 * 9 7 5 11 11 H 1.48503 * 109.46933 * 180.02562 * 9 7 5 12 12 H 1.48491 * 109.47460 * 300.00267 * 9 7 5 13 13 C 1.34777 * 120.00247 * 82.97914 * 4 3 2 14 14 O 1.21727 * 119.99621 * 184.13047 * 13 4 3 15 15 C 1.46562 * 119.99698 * 4.13407 * 13 4 3 16 16 S 1.76210 * 126.18123 * 344.70715 * 15 13 4 17 17 C 1.70923 * 90.37254 * 180.02562 * 16 15 13 18 18 C 1.50699 * 124.70071 * 179.97438 * 17 16 15 19 19 C 1.52999 * 109.47372 * 239.72606 * 18 17 16 20 20 C 1.53006 * 109.47200 * 119.72518 * 18 17 16 21 21 N 1.29373 * 110.59552 * 359.66616 * 17 16 15 22 22 C 1.30940 * 117.47031 * 0.26604 * 21 17 16 23 23 C 1.50696 * 123.04369 * 179.97438 * 22 21 17 24 24 H 4.40635 * 5.51482 * 179.97438 * 4 1 2 25 25 H 1.08999 * 109.47471 * 147.04041 * 3 2 1 26 26 H 1.09002 * 109.47216 * 27.04246 * 3 2 1 27 27 H 0.97002 * 119.99946 * 179.97438 * 8 7 5 28 28 H 1.09001 * 109.47352 * 359.72673 * 18 17 16 29 29 H 1.09001 * 109.46937 * 300.00321 * 19 18 17 30 30 H 1.08997 * 109.47709 * 180.02562 * 19 18 17 31 31 H 1.08996 * 109.47242 * 59.99704 * 19 18 17 32 32 H 1.08998 * 109.46977 * 179.97438 * 20 18 17 33 33 H 1.08999 * 109.47069 * 299.99696 * 20 18 17 34 34 H 1.09001 * 109.46841 * 59.99842 * 20 18 17 35 35 H 1.09000 * 109.47196 * 90.02104 * 23 22 21 36 36 H 1.08996 * 109.47190 * 210.02410 * 23 22 21 37 37 H 1.09004 * 109.46806 * 330.02369 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1740 0.0000 0.0000 3 6 2.6460 0.0007 0.0000 4 7 3.1343 0.0721 1.3793 5 6 3.4985 1.2782 1.9149 6 1 4.1557 1.3125 2.7711 7 6 3.0225 2.4588 1.3563 8 7 1.9219 2.4490 0.6385 9 14 3.9472 4.0592 1.6265 10 1 5.3230 3.9339 1.0817 11 1 3.2381 5.1639 0.9321 12 1 4.0154 4.3521 3.0806 13 6 3.2250 -1.0495 2.1211 14 8 3.5588 -0.9809 3.2897 15 6 2.9218 -2.3516 1.5207 16 16 2.0766 -2.6238 -0.0014 17 6 2.2321 -4.3138 0.2016 18 6 1.7147 -5.3454 -0.7674 19 6 0.7063 -6.2513 -0.0578 20 6 2.8814 -6.1888 -1.2857 21 7 2.8612 -4.5843 1.2992 22 6 3.2496 -3.5750 2.0373 23 6 3.9904 -3.7456 3.3385 24 1 -1.0500 0.0002 0.0000 25 1 3.0090 0.8631 -0.5591 26 1 3.0097 -0.9145 -0.4672 27 1 1.5895 3.2729 0.2490 28 1 1.2276 -4.8455 -1.6047 29 1 1.1934 -6.7512 0.7795 30 1 0.3324 -6.9978 -0.7585 31 1 -0.1248 -5.6506 0.3114 32 1 2.5070 -6.9352 -1.9863 33 1 3.5997 -5.5435 -1.7914 34 1 3.3684 -6.6887 -0.4485 35 1 5.0632 -3.7606 3.1465 36 1 3.7519 -2.9158 4.0038 37 1 3.6917 -4.6838 3.8062 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000490995979.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:36:06 Heat of formation + Delta-G solvation = 51.280892 kcal Electronic energy + Delta-G solvation = -21241.551895 eV Core-core repulsion = 18112.113506 eV Total energy + Delta-G solvation = -3129.438389 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 292.099 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -41.17716 -40.22580 -37.23014 -36.36804 -34.23355 -33.18917 -31.95210 -29.62665 -28.36377 -28.00718 -26.59170 -26.00104 -22.87164 -21.74638 -19.87461 -19.71803 -18.73628 -18.52458 -17.58922 -16.74778 -16.41218 -16.32199 -15.80127 -15.52645 -15.10296 -14.88504 -14.69081 -14.37807 -14.12893 -13.89261 -13.63250 -13.32816 -13.26890 -12.89451 -12.84632 -12.60107 -12.51328 -12.24948 -12.16220 -12.06416 -11.89113 -11.31281 -11.20773 -10.98510 -10.61594 -10.32381 -10.08004 -9.99136 -9.45252 -8.42692 -6.01573 -0.61872 0.33571 0.75484 1.36801 1.42406 1.52061 1.57891 1.93317 2.21606 2.32800 2.34153 2.95876 3.02302 3.15717 3.67702 3.83775 3.96711 4.07808 4.19110 4.19451 4.42406 4.51613 4.70188 4.71541 4.81928 4.85045 4.88147 4.97971 4.98543 5.13070 5.30010 5.33852 5.37483 5.39162 5.50744 5.94066 6.31527 6.75439 7.00390 7.05169 7.22160 7.81982 8.55866 Molecular weight = 292.10amu Principal moments of inertia in cm(-1) A = 0.023890 B = 0.005363 C = 0.004702 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1171.761392 B = 5219.232830 C = 5953.148121 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.213 4.213 2 C -0.165 4.165 3 C 0.224 3.776 4 N -0.433 5.433 5 C -0.353 4.353 6 H 0.082 0.918 7 C 0.008 3.992 8 N -0.860 5.860 9 Si 0.990 3.010 10 H -0.264 1.264 11 H -0.269 1.269 12 H -0.277 1.277 13 C 0.504 3.496 14 O -0.609 6.609 15 C -0.308 4.308 16 S 0.216 5.784 17 C 0.021 3.979 18 C -0.019 4.019 19 C -0.135 4.135 20 C -0.134 4.134 21 N -0.486 5.486 22 C 0.113 3.887 23 C -0.079 4.079 24 H 0.239 0.761 25 H 0.104 0.896 26 H 0.089 0.911 27 H 0.278 0.722 28 H 0.108 0.892 29 H 0.051 0.949 30 H 0.093 0.907 31 H 0.048 0.952 32 H 0.092 0.908 33 H 0.052 0.948 34 H 0.052 0.948 35 H 0.078 0.922 36 H 0.076 0.924 37 H 0.086 0.914 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.657 -11.926 -9.167 15.275 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.231 4.231 2 C -0.168 4.168 3 C 0.100 3.900 4 N -0.149 5.149 5 C -0.480 4.480 6 H 0.100 0.900 7 C -0.197 4.197 8 N -0.494 5.494 9 Si 0.813 3.187 10 H -0.189 1.189 11 H -0.194 1.194 12 H -0.203 1.203 13 C 0.295 3.705 14 O -0.497 6.497 15 C -0.432 4.432 16 S 0.478 5.522 17 C -0.253 4.253 18 C -0.040 4.040 19 C -0.194 4.194 20 C -0.193 4.193 21 N -0.200 5.200 22 C -0.026 4.026 23 C -0.138 4.138 24 H 0.255 0.745 25 H 0.122 0.878 26 H 0.106 0.894 27 H 0.088 0.912 28 H 0.126 0.874 29 H 0.071 0.929 30 H 0.111 0.889 31 H 0.068 0.932 32 H 0.111 0.889 33 H 0.071 0.929 34 H 0.071 0.929 35 H 0.097 0.903 36 H 0.095 0.905 37 H 0.105 0.895 Dipole moment (debyes) X Y Z Total from point charges -2.981 -11.638 -9.425 15.269 hybrid contribution 0.652 1.127 1.338 1.867 sum -2.330 -10.510 -8.087 13.464 Atomic orbital electron populations 1.25145 0.96185 1.03088 0.98712 1.22856 0.94448 0.98090 1.01415 1.18479 0.85933 1.01426 0.84192 1.43748 1.54433 1.06232 1.10515 1.19606 1.28783 0.82398 1.17234 0.90024 1.26125 0.95211 1.02043 0.96357 1.70149 1.16836 1.30137 1.32322 0.85060 0.78732 0.76453 0.78501 1.18859 1.19384 1.20286 1.17064 0.84653 0.83115 0.85711 1.90543 1.55688 1.86418 1.17072 1.25817 1.15163 0.98761 1.03451 1.84348 1.50882 1.00194 1.16750 1.28478 0.99157 1.00612 0.97049 1.20100 0.97453 0.92578 0.93909 1.21778 0.97390 0.99137 1.01070 1.21782 0.96603 0.99610 1.01336 1.65969 1.14366 1.34201 1.05489 1.21005 0.97872 0.85476 0.98250 1.20485 0.98857 1.03537 0.90950 0.74496 0.87829 0.89427 0.91156 0.87365 0.92947 0.88859 0.93235 0.88937 0.92909 0.92929 0.90320 0.90531 0.89532 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.21 -8.11 19.25 74.32 1.43 -6.68 16 2 C -0.17 -7.11 8.90 31.12 0.28 -6.84 16 3 C 0.22 10.05 4.73 84.57 0.40 10.45 16 4 N -0.43 -22.91 2.59 -650.09 -1.69 -24.60 16 5 C -0.35 -19.77 9.22 84.09 0.78 -19.00 16 6 H 0.08 4.87 7.48 -2.92 -0.02 4.85 16 7 C 0.01 0.43 4.80 84.94 0.41 0.84 16 8 N -0.86 -43.52 9.72 21.68 0.21 -43.31 16 9 Si 0.99 40.61 29.61 68.60 2.03 42.64 16 10 H -0.26 -10.48 7.11 99.48 0.71 -9.77 16 11 H -0.27 -10.38 7.11 99.48 0.71 -9.68 16 12 H -0.28 -11.64 7.11 99.48 0.71 -10.94 16 13 C 0.50 26.79 7.45 86.41 0.64 27.43 16 14 O -0.61 -35.78 14.12 -4.43 -0.06 -35.84 16 15 C -0.31 -13.59 6.20 24.10 0.15 -13.44 16 16 S 0.22 7.38 16.57 -56.49 -0.94 6.45 16 17 C 0.02 0.65 5.89 88.47 0.52 1.17 16 18 C -0.02 -0.38 3.35 -11.54 -0.04 -0.42 16 19 C -0.13 -2.51 9.17 71.98 0.66 -1.85 16 20 C -0.13 -2.41 9.17 71.98 0.66 -1.75 16 21 N -0.49 -17.15 10.47 -177.54 -1.86 -19.01 16 22 C 0.11 4.55 6.83 42.35 0.29 4.84 16 23 C -0.08 -2.96 9.91 71.23 0.71 -2.25 16 24 H 0.24 6.87 7.80 -4.42 -0.03 6.83 16 25 H 0.10 4.80 6.64 -2.39 -0.02 4.78 16 26 H 0.09 3.49 4.65 -19.70 -0.09 3.40 16 27 H 0.28 13.18 8.31 -92.71 -0.77 12.41 16 28 H 0.11 1.80 8.12 -2.39 -0.02 1.78 16 29 H 0.05 1.13 8.14 -2.39 -0.02 1.11 16 30 H 0.09 1.16 8.14 -2.39 -0.02 1.14 16 31 H 0.05 0.98 8.14 -2.39 -0.02 0.96 16 32 H 0.09 1.11 8.14 -2.39 -0.02 1.09 16 33 H 0.05 0.98 8.14 -2.39 -0.02 0.96 16 34 H 0.05 1.10 8.14 -2.39 -0.02 1.08 16 35 H 0.08 2.72 8.14 -2.39 -0.02 2.70 16 36 H 0.08 3.31 5.84 -2.39 -0.01 3.29 16 37 H 0.09 2.74 8.14 -2.39 -0.02 2.72 16 Total: -1.00 -68.02 323.26 5.58 -62.44 By element: Atomic # 1 Polarization: 17.74 SS G_CDS: 1.00 Total: 18.74 kcal Atomic # 6 Polarization: -14.38 SS G_CDS: 6.88 Total: -7.50 kcal Atomic # 7 Polarization: -83.58 SS G_CDS: -3.33 Total: -86.92 kcal Atomic # 8 Polarization: -35.78 SS G_CDS: -0.06 Total: -35.84 kcal Atomic # 14 Polarization: 40.61 SS G_CDS: 2.03 Total: 42.64 kcal Atomic # 16 Polarization: 7.38 SS G_CDS: -0.94 Total: 6.45 kcal Total: -68.02 5.58 -62.44 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000490995979.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 113.716 kcal (2) G-P(sol) polarization free energy of solvation -68.016 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 45.700 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.580 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.435 kcal (6) G-S(sol) free energy of system = (1) + (5) 51.281 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds