Wall clock time and date at job start Tue Mar 31 2020 06:40:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17403 * 1 3 3 C 1.47195 * 179.97438 * 2 1 4 4 N 1.46506 * 109.46749 * 156.32671 * 3 2 1 5 5 C 1.36895 * 119.99726 * 269.18120 * 4 3 2 6 6 H 1.07996 * 119.99745 * 190.78621 * 5 4 3 7 7 C 1.39008 * 119.99964 * 10.80011 * 5 4 3 8 8 N 1.31392 * 120.00076 * 32.09792 * 7 5 4 9 9 Si 1.86802 * 119.99541 * 212.10256 * 7 5 4 10 10 H 1.48493 * 109.47222 * 359.97438 * 9 7 5 11 11 H 1.48502 * 109.46946 * 119.99766 * 9 7 5 12 12 H 1.48501 * 109.46962 * 239.99221 * 9 7 5 13 13 C 1.34776 * 119.99990 * 89.18793 * 4 3 2 14 14 O 1.21728 * 119.99657 * 183.89456 * 13 4 3 15 15 C 1.46558 * 119.99985 * 3.89557 * 13 4 3 16 16 C 1.36780 * 126.17875 * 161.66511 * 15 13 4 17 17 N 1.30946 * 113.92235 * 179.74596 * 16 15 13 18 18 C 1.29376 * 117.46475 * 0.51567 * 17 16 15 19 19 C 1.50697 * 124.70396 * 179.76821 * 18 17 16 20 20 C 1.52992 * 109.47232 * 59.69085 * 19 18 17 21 21 C 1.53008 * 109.46956 * 299.69442 * 19 18 17 22 22 C 1.53002 * 109.47276 * 179.69795 * 19 18 17 23 23 S 1.70928 * 110.59581 * 359.49778 * 18 17 16 24 24 H 4.40638 * 5.51423 * 180.02562 * 4 1 2 25 25 H 1.08996 * 109.47804 * 36.32556 * 3 2 1 26 26 H 1.09001 * 109.46951 * 276.32021 * 3 2 1 27 27 H 0.97004 * 120.00055 * 180.02562 * 8 7 5 28 28 H 1.08000 * 123.04057 * 359.97438 * 16 15 13 29 29 H 1.09002 * 109.47392 * 60.00740 * 20 19 18 30 30 H 1.09001 * 109.47519 * 300.00598 * 20 19 18 31 31 H 1.09005 * 109.47498 * 180.02562 * 20 19 18 32 32 H 1.08995 * 109.47385 * 180.02562 * 21 19 18 33 33 H 1.09006 * 109.46878 * 300.00423 * 21 19 18 34 34 H 1.09001 * 109.46810 * 60.00005 * 21 19 18 35 35 H 1.08996 * 109.46627 * 299.99241 * 22 19 18 36 36 H 1.09000 * 109.47158 * 59.99967 * 22 19 18 37 37 H 1.09001 * 109.46699 * 179.97438 * 22 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1740 0.0000 0.0000 3 6 2.6460 0.0007 0.0000 4 7 3.1337 1.2659 -0.5546 5 6 3.3777 1.3759 -1.8972 6 1 3.8976 2.2405 -2.2824 7 6 2.9561 0.3748 -2.7645 8 7 1.8615 -0.3033 -2.5027 9 14 3.9458 -0.0066 -4.3022 10 1 5.1263 0.8919 -4.3666 11 1 4.4005 -1.4197 -4.2603 12 1 3.0971 0.2049 -5.5022 13 6 3.3422 2.3216 0.2569 14 8 3.6792 3.3929 -0.2126 15 6 3.1632 2.1796 1.7046 16 6 3.6594 3.0170 2.6655 17 7 3.3490 2.6654 3.8881 18 6 2.6399 1.5939 4.0389 19 6 2.1958 1.0389 5.3677 20 6 1.3410 2.0789 6.0947 21 6 3.4239 0.7045 6.2169 22 6 1.3718 -0.2301 5.1408 23 16 2.2702 0.8989 2.5217 24 1 -1.0502 -0.0003 0.0003 25 1 3.0098 -0.8271 -0.6087 26 1 3.0093 -0.1123 1.0214 27 1 1.5674 -1.0021 -3.1078 28 1 4.2505 3.8914 2.4364 29 1 0.4660 2.3172 5.4899 30 1 1.9280 2.9830 6.2564 31 1 1.0201 1.6777 7.0561 32 1 3.1027 0.3027 7.1778 33 1 4.0329 -0.0364 5.6989 34 1 4.0109 1.6086 6.3785 35 1 0.4969 0.0082 4.5360 36 1 1.9808 -0.9710 4.6229 37 1 1.0510 -0.6317 6.1020 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000491012336.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:40:44 Heat of formation + Delta-G solvation = 73.346964 kcal Electronic energy + Delta-G solvation = -21191.010460 eV Core-core repulsion = 18062.528928 eV Total energy + Delta-G solvation = -3128.481532 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 292.099 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -39.48744 -38.60447 -36.42342 -35.26165 -32.43444 -31.45936 -29.48197 -27.45830 -27.27188 -26.75657 -25.84847 -24.40027 -21.34656 -20.32968 -18.20992 -17.94100 -17.64155 -16.79473 -15.78989 -15.40516 -14.76206 -14.71573 -14.21250 -14.20756 -14.07526 -13.61040 -13.33266 -13.02804 -12.59240 -12.47313 -12.17011 -12.06517 -11.89477 -11.70892 -11.48019 -11.18486 -11.01967 -10.98806 -10.82862 -10.66854 -10.44364 -9.58869 -9.54429 -9.23928 -9.08337 -8.71882 -8.47783 -8.31556 -8.06904 -6.64527 -3.94994 0.86327 1.79042 2.22360 2.98468 3.15279 3.15675 3.23258 3.59403 3.87721 4.02562 4.09699 4.27265 4.71839 4.80819 4.89853 4.90312 5.11287 5.27808 5.49025 5.55199 5.57924 5.63565 5.71667 5.81460 5.85749 5.92481 5.96613 6.02378 6.08352 6.26475 6.27317 6.40229 6.70162 6.82438 7.32365 7.78865 8.17274 8.22016 8.66998 8.90234 9.08541 9.69887 10.34247 Molecular weight = 292.10amu Principal moments of inertia in cm(-1) A = 0.026305 B = 0.005078 C = 0.004599 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1064.178968 B = 5512.501733 C = 6086.550463 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.231 4.231 2 C -0.126 4.126 3 C 0.217 3.783 4 N -0.416 5.416 5 C -0.314 4.314 6 H 0.115 0.885 7 C 0.038 3.962 8 N -0.829 5.829 9 Si 0.916 3.084 10 H -0.263 1.263 11 H -0.276 1.276 12 H -0.280 1.280 13 C 0.500 3.500 14 O -0.575 6.575 15 C -0.249 4.249 16 C 0.070 3.930 17 N -0.473 5.473 18 C -0.004 4.004 19 C 0.014 3.986 20 C -0.132 4.132 21 C -0.132 4.132 22 C -0.154 4.154 23 S 0.189 5.811 24 H 0.203 0.797 25 H 0.112 0.888 26 H 0.074 0.926 27 H 0.274 0.726 28 H 0.177 0.823 29 H 0.055 0.945 30 H 0.065 0.935 31 H 0.060 0.940 32 H 0.060 0.940 33 H 0.055 0.945 34 H 0.065 0.935 35 H 0.063 0.937 36 H 0.063 0.937 37 H 0.070 0.930 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.831 -4.982 13.159 14.189 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.250 4.250 2 C -0.128 4.128 3 C 0.092 3.908 4 N -0.132 5.132 5 C -0.441 4.441 6 H 0.133 0.867 7 C -0.170 4.170 8 N -0.463 5.463 9 Si 0.741 3.259 10 H -0.187 1.187 11 H -0.202 1.202 12 H -0.206 1.206 13 C 0.290 3.710 14 O -0.462 6.462 15 C -0.373 4.373 16 C -0.086 4.086 17 N -0.187 5.187 18 C -0.278 4.278 19 C 0.011 3.989 20 C -0.191 4.191 21 C -0.191 4.191 22 C -0.212 4.212 23 S 0.448 5.552 24 H 0.220 0.780 25 H 0.130 0.870 26 H 0.091 0.909 27 H 0.084 0.916 28 H 0.194 0.806 29 H 0.074 0.926 30 H 0.084 0.916 31 H 0.079 0.921 32 H 0.079 0.921 33 H 0.074 0.926 34 H 0.084 0.916 35 H 0.082 0.918 36 H 0.082 0.918 37 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges -2.180 -5.218 13.001 14.177 hybrid contribution 0.520 0.465 -1.162 1.355 sum -1.660 -4.753 11.839 12.865 Atomic orbital electron populations 1.24254 0.95252 1.00742 1.04743 1.22640 0.93894 0.99729 0.96543 1.18550 0.85497 0.89952 0.96785 1.43730 1.53776 1.07997 1.07669 1.19799 1.35425 1.08367 0.80547 0.86714 1.25367 0.94871 0.97056 0.99736 1.70236 1.16214 1.21619 1.38263 0.86046 0.80611 0.78694 0.80578 1.18709 1.20196 1.20561 1.16451 0.86976 0.84622 0.82972 1.90670 1.54512 1.25962 1.75010 1.26473 1.08743 1.01857 1.00273 1.22135 1.00938 1.00718 0.84834 1.65956 1.14188 1.14272 1.24248 1.27575 1.02119 0.96741 1.01392 1.19099 0.96043 0.95052 0.88753 1.21815 0.99330 0.98609 0.99362 1.21820 0.96535 1.02154 0.98598 1.22020 1.00186 0.96381 1.02593 1.84559 1.48855 1.25271 0.96501 0.78006 0.86997 0.90928 0.91558 0.80559 0.92616 0.91625 0.92111 0.92131 0.92611 0.91621 0.91758 0.91827 0.91116 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.23 -4.56 19.25 29.55 0.57 -3.99 16 2 C -0.13 -2.71 9.42 -37.12 -0.35 -3.05 16 3 C 0.22 4.73 4.76 -6.83 -0.03 4.70 16 4 N -0.42 -10.52 2.58 -119.46 -0.31 -10.83 16 5 C -0.31 -8.39 9.32 -15.01 -0.14 -8.53 16 6 H 0.12 3.24 7.40 -52.49 -0.39 2.86 16 7 C 0.04 0.95 4.64 -17.45 -0.08 0.86 16 8 N -0.83 -20.52 9.73 55.50 0.54 -19.98 16 9 Si 0.92 19.18 29.66 -169.99 -5.04 14.14 16 10 H -0.26 -5.58 7.11 56.52 0.40 -5.18 16 11 H -0.28 -5.62 7.11 56.52 0.40 -5.22 16 12 H -0.28 -5.89 7.11 56.52 0.40 -5.49 16 13 C 0.50 12.75 7.56 -12.91 -0.10 12.65 16 14 O -0.58 -16.44 16.55 5.16 0.09 -16.36 16 15 C -0.25 -5.31 6.16 -36.76 -0.23 -5.54 16 16 C 0.07 1.39 11.22 -18.46 -0.21 1.18 16 17 N -0.47 -8.51 10.48 -11.25 -0.12 -8.63 16 18 C 0.00 -0.07 5.77 -13.31 -0.08 -0.14 16 19 C 0.01 0.17 0.99 -155.66 -0.15 0.02 16 20 C -0.13 -1.48 8.45 37.15 0.31 -1.16 16 21 C -0.13 -1.44 8.45 37.16 0.31 -1.12 16 22 C -0.15 -1.59 7.53 37.16 0.28 -1.31 16 23 S 0.19 3.26 15.42 -107.50 -1.66 1.60 16 24 H 0.20 3.21 7.80 -54.08 -0.42 2.79 16 25 H 0.11 2.48 6.63 -51.93 -0.34 2.14 16 26 H 0.07 1.42 4.24 -22.79 -0.10 1.32 16 27 H 0.27 6.36 8.31 -40.82 -0.34 6.02 16 28 H 0.18 3.35 8.06 -52.49 -0.42 2.92 16 29 H 0.05 0.64 8.14 -51.93 -0.42 0.22 16 30 H 0.06 0.80 8.14 -51.93 -0.42 0.37 16 31 H 0.06 0.53 8.14 -51.93 -0.42 0.11 16 32 H 0.06 0.52 8.14 -51.93 -0.42 0.09 16 33 H 0.05 0.61 8.14 -51.93 -0.42 0.19 16 34 H 0.06 0.78 8.14 -51.93 -0.42 0.36 16 35 H 0.06 0.69 7.91 -51.93 -0.41 0.28 16 36 H 0.06 0.65 7.91 -51.93 -0.41 0.24 16 37 H 0.07 0.57 8.14 -51.93 -0.42 0.15 16 LS Contribution 324.51 15.07 4.89 4.89 Total: -1.00 -30.35 324.51 -6.09 -36.44 By element: Atomic # 1 Polarization: 8.75 SS G_CDS: -4.59 Total: 4.16 kcal Atomic # 6 Polarization: -5.55 SS G_CDS: 0.11 Total: -5.44 kcal Atomic # 7 Polarization: -39.55 SS G_CDS: 0.11 Total: -39.44 kcal Atomic # 8 Polarization: -16.44 SS G_CDS: 0.09 Total: -16.36 kcal Atomic # 14 Polarization: 19.18 SS G_CDS: -5.04 Total: 14.14 kcal Atomic # 16 Polarization: 3.26 SS G_CDS: -1.66 Total: 1.60 kcal Total LS contribution 4.89 Total: 4.89 kcal Total: -30.35 -6.09 -36.44 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000491012336.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 109.790 kcal (2) G-P(sol) polarization free energy of solvation -30.355 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 79.435 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.088 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.443 kcal (6) G-S(sol) free energy of system = (1) + (5) 73.347 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds