Wall clock time and date at job start Tue Mar 31 2020 07:03:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17404 * 1 3 3 C 1.47192 * 179.97438 * 2 1 4 4 N 1.46505 * 109.47125 * 155.83164 * 3 2 1 5 5 C 1.46503 * 119.99716 * 270.00286 * 4 3 2 6 6 C 1.34771 * 120.00030 * 90.00003 * 4 3 2 7 7 O 1.21590 * 120.00064 * 0.02562 * 6 4 3 8 8 N 1.34776 * 119.99981 * 180.27618 * 6 4 3 9 9 C 1.40138 * 120.00193 * 174.02177 * 8 6 4 10 10 C 1.38694 * 120.07583 * 335.22565 * 9 8 6 11 11 C 1.38189 * 120.02151 * 179.71568 * 10 9 8 12 12 C 1.38543 * 120.17629 * 0.55958 * 11 10 9 13 13 F 1.35103 * 119.92535 * 179.74410 * 12 11 10 14 14 C 1.38342 * 120.15015 * 359.71561 * 12 11 10 15 15 C 1.38738 * 119.97550 * 0.02562 * 14 12 11 16 16 O 1.35785 * 120.08529 * 180.02562 * 15 14 12 17 17 C 1.34808 * 117.00037 * 5.18728 * 16 15 14 18 18 H 1.07991 * 120.00000 * 354.98391 * 17 16 15 19 19 C 1.38629 * 119.99616 * 174.98273 * 17 16 15 20 20 N 1.31574 * 120.00280 * 359.97438 * 19 17 16 21 21 Si 1.86803 * 119.99931 * 180.02562 * 19 17 16 22 22 H 1.48504 * 109.47023 * 359.97438 * 21 19 17 23 23 H 1.48496 * 109.47441 * 119.99781 * 21 19 17 24 24 H 1.48504 * 109.47279 * 240.00022 * 21 19 17 25 25 H 4.40642 * 5.51489 * 180.02562 * 4 1 2 26 26 H 1.09006 * 109.47441 * 35.83402 * 3 2 1 27 27 H 1.09001 * 109.47405 * 275.83205 * 3 2 1 28 28 H 1.09001 * 109.46994 * 269.99606 * 5 4 3 29 29 H 1.08995 * 109.47578 * 30.00114 * 5 4 3 30 30 H 1.09000 * 109.47035 * 150.00352 * 5 4 3 31 31 H 0.97003 * 120.00205 * 354.02776 * 8 6 4 32 32 H 1.08003 * 119.98664 * 359.97120 * 10 9 8 33 33 H 1.08007 * 119.91494 * 180.25269 * 11 10 9 34 34 H 1.08000 * 120.01352 * 180.02562 * 14 12 11 35 35 H 0.97006 * 119.99544 * 180.02562 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1740 0.0000 0.0000 3 6 2.6460 0.0007 0.0000 4 7 3.1338 1.2611 -0.5655 5 6 3.3778 1.3718 -2.0058 6 6 3.3579 2.3187 0.2392 7 8 3.1557 2.2266 1.4347 8 7 3.8013 3.4798 -0.2818 9 6 3.9150 4.6149 0.5322 10 6 3.1360 4.7326 1.6736 11 6 3.2533 5.8497 2.4786 12 6 4.1397 6.8601 2.1428 13 9 4.2465 7.9524 2.9307 14 6 4.9162 6.7528 1.0028 15 6 4.8074 5.6316 0.1930 16 8 5.5688 5.5237 -0.9261 17 6 6.4867 6.4882 -1.1371 18 1 6.5361 7.3406 -0.4759 19 6 7.3673 6.3856 -2.2028 20 7 7.3075 5.3468 -3.0081 21 14 8.6399 7.7217 -2.4948 22 1 8.5003 8.7737 -1.4560 23 1 10.0012 7.1327 -2.4238 24 1 8.4292 8.3211 -3.8371 25 1 -1.0502 -0.0002 0.0003 26 1 3.0097 -0.8324 -0.6017 27 1 3.0094 -0.1036 1.0223 28 1 4.4074 1.0872 -2.2228 29 1 2.6973 0.7101 -2.5416 30 1 3.2104 2.4006 -2.3247 31 1 4.0417 3.5300 -1.2202 32 1 2.4405 3.9490 1.9356 33 1 2.6487 5.9376 3.3693 34 1 5.6068 7.5416 0.7434 35 1 7.9240 5.2750 -3.7536 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000491101720.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:03:03 Heat of formation + Delta-G solvation = -0.255211 kcal Electronic energy + Delta-G solvation = -22691.372064 eV Core-core repulsion = 18993.485726 eV Total energy + Delta-G solvation = -3697.886338 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 292.101 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -48.21756 -40.46149 -38.89593 -36.65152 -35.63165 -34.29552 -32.80418 -32.39469 -29.42348 -28.71107 -27.72477 -25.86242 -25.45118 -22.46610 -21.64354 -19.95122 -18.60606 -18.33583 -18.05782 -17.39945 -16.78899 -15.82766 -15.34889 -15.22538 -15.13493 -14.95703 -14.29068 -14.11466 -13.90170 -13.59138 -13.51362 -13.27540 -13.01685 -12.89627 -12.54251 -12.25089 -12.03580 -11.66301 -11.40994 -11.02178 -10.75831 -10.64698 -10.51170 -10.21729 -9.84977 -9.79758 -9.46220 -8.96319 -8.82932 -7.85218 -7.03073 -6.60419 -4.17645 1.85854 2.13691 2.31238 2.79379 3.05647 3.08409 3.13505 3.21265 3.38098 3.84700 4.15305 4.32978 4.41279 4.85235 4.98227 5.07376 5.13587 5.15109 5.41679 5.53532 5.62280 5.72678 5.75991 5.86949 6.03372 6.17053 6.40301 6.61683 6.68275 6.91975 6.93758 7.07831 7.10282 7.24076 7.55119 7.67841 7.84164 8.13994 8.76184 8.86328 9.47199 10.57060 Molecular weight = 292.10amu Principal moments of inertia in cm(-1) A = 0.013725 B = 0.005165 C = 0.003847 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2039.635412 B = 5420.117400 C = 7276.676089 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C -0.199 4.199 3 C 0.241 3.759 4 N -0.630 5.630 5 C 0.075 3.925 6 C 0.706 3.294 7 O -0.579 6.579 8 N -0.661 5.661 9 C 0.083 3.917 10 C -0.063 4.063 11 C -0.223 4.223 12 C 0.123 3.877 13 F -0.152 7.152 14 C -0.255 4.255 15 C 0.154 3.846 16 O -0.173 6.173 17 C -0.390 4.390 18 H 0.095 0.905 19 C 0.043 3.957 20 N -0.861 5.861 21 Si 0.942 3.058 22 H -0.265 1.265 23 H -0.275 1.275 24 H -0.275 1.275 25 H 0.216 0.784 26 H 0.101 0.899 27 H 0.109 0.891 28 H 0.065 0.935 29 H 0.073 0.927 30 H 0.072 0.928 31 H 0.414 0.586 32 H 0.149 0.851 33 H 0.122 0.878 34 H 0.143 0.857 35 H 0.271 0.729 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.859 -7.476 1.098 10.903 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.214 4.214 2 C -0.200 4.200 3 C 0.118 3.882 4 N -0.367 5.367 5 C -0.068 4.068 6 C 0.408 3.592 7 O -0.457 6.457 8 N -0.308 5.308 9 C -0.012 4.012 10 C -0.083 4.083 11 C -0.243 4.243 12 C 0.103 3.897 13 F -0.131 7.131 14 C -0.276 4.276 15 C 0.098 3.902 16 O -0.076 6.076 17 C -0.466 4.466 18 H 0.112 0.888 19 C -0.162 4.162 20 N -0.496 5.496 21 Si 0.767 3.233 22 H -0.190 1.190 23 H -0.201 1.201 24 H -0.201 1.201 25 H 0.232 0.768 26 H 0.119 0.881 27 H 0.127 0.873 28 H 0.083 0.917 29 H 0.092 0.908 30 H 0.091 0.909 31 H 0.252 0.748 32 H 0.166 0.834 33 H 0.140 0.860 34 H 0.161 0.839 35 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges -7.832 -7.783 1.527 11.146 hybrid contribution 0.630 0.966 -0.595 1.298 sum -7.201 -6.817 0.932 9.960 Atomic orbital electron populations 1.24920 0.95927 0.99285 1.01283 1.23750 0.95145 1.01015 1.00116 1.18142 0.83237 0.85181 1.01618 1.46957 1.70049 1.11888 1.07830 1.21833 1.01927 1.03216 0.79791 1.15794 0.78543 0.79943 0.84883 1.90849 1.59066 1.82653 1.13095 1.42399 1.67407 1.07373 1.13653 1.16721 1.01133 0.87143 0.96247 1.20805 0.97566 0.97180 0.92786 1.20495 1.04688 0.95542 1.03604 1.17453 0.98225 0.83906 0.90066 1.91408 1.95393 1.52769 1.73515 1.20824 1.07281 1.01774 0.97722 1.18673 0.91083 0.92308 0.88139 1.83895 1.43186 1.47459 1.33070 1.21383 1.10617 1.00787 1.13849 0.88781 1.25265 0.97670 0.98142 0.95122 1.70016 1.36465 1.27888 1.15209 0.85620 0.79445 0.79459 0.78820 1.18959 1.20056 1.20063 0.76763 0.88084 0.87290 0.91680 0.90788 0.90906 0.74819 0.83403 0.85959 0.83930 0.91938 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.20 -2.18 19.25 29.55 0.57 -1.61 16 2 C -0.20 -2.48 13.68 -37.13 -0.51 -2.99 16 3 C 0.24 2.81 5.88 -6.83 -0.04 2.77 16 4 N -0.63 -8.80 2.83 -190.73 -0.54 -9.34 16 5 C 0.08 0.85 10.16 59.85 0.61 1.45 16 6 C 0.71 12.73 8.08 -86.92 -0.70 12.03 16 7 O -0.58 -11.79 13.09 5.29 0.07 -11.72 16 8 N -0.66 -12.64 5.12 -14.07 -0.07 -12.72 16 9 C 0.08 1.76 6.45 -83.44 -0.54 1.22 16 10 C -0.06 -1.25 8.71 -39.43 -0.34 -1.59 16 11 C -0.22 -4.25 10.02 -39.49 -0.40 -4.65 16 12 C 0.12 2.51 7.29 -39.43 -0.29 2.22 16 13 F -0.15 -2.95 17.26 2.25 0.04 -2.91 16 14 C -0.26 -5.62 9.14 -39.36 -0.36 -5.98 16 15 C 0.15 3.58 6.66 -38.94 -0.26 3.32 16 16 O -0.17 -4.50 9.17 0.00 0.00 -4.50 16 17 C -0.39 -10.26 9.49 30.88 0.29 -9.97 16 18 H 0.09 2.34 5.20 -52.49 -0.27 2.07 16 19 C 0.04 1.10 5.49 -17.52 -0.10 1.00 16 20 N -0.86 -23.25 13.67 55.48 0.76 -22.49 16 21 Si 0.94 19.63 29.55 -169.99 -5.02 14.61 16 22 H -0.27 -5.38 7.11 56.52 0.40 -4.98 16 23 H -0.28 -5.66 7.11 56.52 0.40 -5.26 16 24 H -0.28 -5.61 7.11 56.52 0.40 -5.21 16 25 H 0.22 1.62 7.80 -54.08 -0.42 1.20 16 26 H 0.10 0.83 8.07 -51.93 -0.42 0.41 16 27 H 0.11 1.35 7.42 -51.93 -0.39 0.97 16 28 H 0.06 0.70 8.14 -51.93 -0.42 0.28 16 29 H 0.07 0.65 8.07 -51.93 -0.42 0.23 16 30 H 0.07 0.86 6.45 -51.93 -0.33 0.53 16 31 H 0.41 7.62 6.16 -40.82 -0.25 7.37 16 32 H 0.15 2.93 5.79 -52.48 -0.30 2.62 16 33 H 0.12 2.02 8.06 -52.48 -0.42 1.60 16 34 H 0.14 3.13 5.63 -52.49 -0.30 2.83 16 35 H 0.27 6.73 8.31 -40.82 -0.34 6.40 16 LS Contribution 317.44 15.07 4.78 4.78 Total: -1.00 -30.89 317.44 -5.13 -36.02 By element: Atomic # 1 Polarization: 14.14 SS G_CDS: -3.08 Total: 11.06 kcal Atomic # 6 Polarization: -0.72 SS G_CDS: -2.06 Total: -2.78 kcal Atomic # 7 Polarization: -44.70 SS G_CDS: 0.15 Total: -44.55 kcal Atomic # 8 Polarization: -16.29 SS G_CDS: 0.07 Total: -16.22 kcal Atomic # 9 Polarization: -2.95 SS G_CDS: 0.04 Total: -2.91 kcal Atomic # 14 Polarization: 19.63 SS G_CDS: -5.02 Total: 14.61 kcal Total LS contribution 4.78 Total: 4.78 kcal Total: -30.89 -5.13 -36.02 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000491101720.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 35.761 kcal (2) G-P(sol) polarization free energy of solvation -30.886 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 4.875 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.130 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.016 kcal (6) G-S(sol) free energy of system = (1) + (5) -0.255 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds