Wall clock time and date at job start Tue Mar 31 2020 07:03:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17404 * 1 3 3 C 1.47192 * 179.97438 * 2 1 4 4 N 1.46505 * 109.47125 * 155.83164 * 3 2 1 5 5 C 1.46503 * 119.99716 * 270.00286 * 4 3 2 6 6 C 1.34771 * 120.00030 * 90.00003 * 4 3 2 7 7 O 1.21590 * 120.00064 * 0.02562 * 6 4 3 8 8 N 1.34776 * 119.99981 * 180.27618 * 6 4 3 9 9 C 1.40138 * 120.00193 * 174.02177 * 8 6 4 10 10 C 1.38694 * 120.07583 * 335.22565 * 9 8 6 11 11 C 1.38189 * 120.02151 * 179.71568 * 10 9 8 12 12 C 1.38543 * 120.17629 * 0.55958 * 11 10 9 13 13 F 1.35103 * 119.92535 * 179.74410 * 12 11 10 14 14 C 1.38342 * 120.15015 * 359.71561 * 12 11 10 15 15 C 1.38738 * 119.97550 * 0.02562 * 14 12 11 16 16 O 1.35785 * 120.08529 * 180.02562 * 15 14 12 17 17 C 1.34808 * 117.00037 * 5.18728 * 16 15 14 18 18 H 1.07991 * 120.00000 * 354.98391 * 17 16 15 19 19 C 1.38629 * 119.99616 * 174.98273 * 17 16 15 20 20 N 1.31574 * 120.00280 * 359.97438 * 19 17 16 21 21 Si 1.86803 * 119.99931 * 180.02562 * 19 17 16 22 22 H 1.48504 * 109.47023 * 359.97438 * 21 19 17 23 23 H 1.48496 * 109.47441 * 119.99781 * 21 19 17 24 24 H 1.48504 * 109.47279 * 240.00022 * 21 19 17 25 25 H 4.40642 * 5.51489 * 180.02562 * 4 1 2 26 26 H 1.09006 * 109.47441 * 35.83402 * 3 2 1 27 27 H 1.09001 * 109.47405 * 275.83205 * 3 2 1 28 28 H 1.09001 * 109.46994 * 269.99606 * 5 4 3 29 29 H 1.08995 * 109.47578 * 30.00114 * 5 4 3 30 30 H 1.09000 * 109.47035 * 150.00352 * 5 4 3 31 31 H 0.97003 * 120.00205 * 354.02776 * 8 6 4 32 32 H 1.08003 * 119.98664 * 359.97120 * 10 9 8 33 33 H 1.08007 * 119.91494 * 180.25269 * 11 10 9 34 34 H 1.08000 * 120.01352 * 180.02562 * 14 12 11 35 35 H 0.97006 * 119.99544 * 180.02562 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1740 0.0000 0.0000 3 6 2.6460 0.0007 0.0000 4 7 3.1338 1.2611 -0.5655 5 6 3.3778 1.3718 -2.0058 6 6 3.3579 2.3187 0.2392 7 8 3.1557 2.2266 1.4347 8 7 3.8013 3.4798 -0.2818 9 6 3.9150 4.6149 0.5322 10 6 3.1360 4.7326 1.6736 11 6 3.2533 5.8497 2.4786 12 6 4.1397 6.8601 2.1428 13 9 4.2465 7.9524 2.9307 14 6 4.9162 6.7528 1.0028 15 6 4.8074 5.6316 0.1930 16 8 5.5688 5.5237 -0.9261 17 6 6.4867 6.4882 -1.1371 18 1 6.5361 7.3406 -0.4759 19 6 7.3673 6.3856 -2.2028 20 7 7.3075 5.3468 -3.0081 21 14 8.6399 7.7217 -2.4948 22 1 8.5003 8.7737 -1.4560 23 1 10.0012 7.1327 -2.4238 24 1 8.4292 8.3211 -3.8371 25 1 -1.0502 -0.0002 0.0003 26 1 3.0097 -0.8324 -0.6017 27 1 3.0094 -0.1036 1.0223 28 1 4.4074 1.0872 -2.2228 29 1 2.6973 0.7101 -2.5416 30 1 3.2104 2.4006 -2.3247 31 1 4.0417 3.5300 -1.2202 32 1 2.4405 3.9490 1.9356 33 1 2.6487 5.9376 3.3693 34 1 5.6068 7.5416 0.7434 35 1 7.9240 5.2750 -3.7536 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000491101720.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:03:02 Heat of formation + Delta-G solvation = -18.562071 kcal Electronic energy + Delta-G solvation = -22692.165909 eV Core-core repulsion = 18993.485726 eV Total energy + Delta-G solvation = -3698.680183 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 292.101 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -49.81682 -41.92815 -40.52834 -38.25844 -36.94088 -35.78048 -34.30377 -33.78684 -31.10463 -30.16144 -28.81743 -27.44639 -26.91469 -24.11164 -23.26191 -21.34059 -20.14960 -19.94843 -19.23678 -18.84315 -18.28338 -17.21027 -16.96785 -16.74155 -16.56147 -16.45110 -15.95176 -15.58125 -15.29349 -15.21770 -15.06751 -14.73958 -14.02326 -14.00780 -13.95612 -13.87266 -13.43729 -13.19991 -13.07019 -12.64174 -12.35641 -12.11659 -11.67318 -11.62319 -11.34955 -11.09935 -11.00251 -10.81765 -9.98749 -9.54874 -8.69192 -8.50471 -6.15792 0.20250 0.45280 1.21592 1.38460 1.43896 1.54266 1.89562 1.92354 2.12319 2.16030 2.69806 2.88457 3.03092 3.20034 3.45599 3.53742 3.92274 4.12528 4.16308 4.28415 4.35702 4.50127 4.59890 4.67234 4.84125 4.94576 4.98887 5.07625 5.21706 5.25675 5.32347 5.43110 5.54720 5.76253 5.94409 6.05140 6.67933 6.73324 6.94551 7.33685 7.62747 8.70508 Molecular weight = 292.10amu Principal moments of inertia in cm(-1) A = 0.013725 B = 0.005165 C = 0.003847 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2039.635412 B = 5420.117400 C = 7276.676089 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.183 4.183 2 C -0.238 4.238 3 C 0.237 3.763 4 N -0.622 5.622 5 C 0.072 3.928 6 C 0.701 3.299 7 O -0.606 6.606 8 N -0.664 5.664 9 C 0.083 3.917 10 C -0.064 4.064 11 C -0.199 4.199 12 C 0.118 3.882 13 F -0.144 7.144 14 C -0.259 4.259 15 C 0.128 3.872 16 O -0.204 6.204 17 C -0.415 4.415 18 H 0.099 0.901 19 C -0.008 4.008 20 N -0.904 5.904 21 Si 1.011 2.989 22 H -0.257 1.257 23 H -0.270 1.270 24 H -0.267 1.267 25 H 0.245 0.755 26 H 0.138 0.862 27 H 0.097 0.903 28 H 0.070 0.930 29 H 0.105 0.895 30 H 0.062 0.938 31 H 0.415 0.585 32 H 0.155 0.845 33 H 0.157 0.843 34 H 0.138 0.862 35 H 0.275 0.725 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.794 -7.742 1.550 11.818 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.239 4.239 3 C 0.116 3.884 4 N -0.358 5.358 5 C -0.070 4.070 6 C 0.404 3.596 7 O -0.486 6.486 8 N -0.312 5.312 9 C -0.013 4.013 10 C -0.085 4.085 11 C -0.219 4.219 12 C 0.098 3.902 13 F -0.123 7.123 14 C -0.280 4.280 15 C 0.074 3.926 16 O -0.110 6.110 17 C -0.491 4.491 18 H 0.116 0.884 19 C -0.207 4.207 20 N -0.541 5.541 21 Si 0.831 3.169 22 H -0.181 1.181 23 H -0.195 1.195 24 H -0.192 1.192 25 H 0.262 0.738 26 H 0.156 0.844 27 H 0.115 0.885 28 H 0.089 0.911 29 H 0.123 0.877 30 H 0.081 0.919 31 H 0.253 0.747 32 H 0.172 0.828 33 H 0.175 0.825 34 H 0.155 0.845 35 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges -8.802 -8.084 1.983 12.115 hybrid contribution 0.713 0.946 -0.593 1.325 sum -8.089 -7.138 1.391 10.877 Atomic orbital electron populations 1.25757 0.96868 0.97691 0.99815 1.24042 0.95817 1.02495 1.01538 1.18385 0.83376 0.84935 1.01735 1.47071 1.68758 1.11424 1.08547 1.22008 1.03181 1.03454 0.78354 1.15979 0.78341 0.80346 0.84982 1.90809 1.60276 1.83213 1.14326 1.42444 1.67727 1.07484 1.13548 1.16980 1.00362 0.87364 0.96613 1.20958 0.97494 0.97662 0.92408 1.20869 1.03241 0.93990 1.03786 1.17428 0.98406 0.84588 0.89768 1.91427 1.95363 1.52420 1.73109 1.20904 1.07454 1.01377 0.98273 1.18994 0.91701 0.93537 0.88366 1.83876 1.44341 1.48096 1.34648 1.21774 1.11394 1.01347 1.14579 0.88367 1.26349 0.99371 1.00465 0.94556 1.70118 1.37873 1.29973 1.16126 0.84620 0.76569 0.76653 0.79021 1.18107 1.19493 1.19180 0.73840 0.84400 0.88480 0.91099 0.87694 0.91928 0.74714 0.82780 0.82530 0.84463 0.91607 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -3.67 19.25 74.32 1.43 -2.24 16 2 C -0.24 -5.53 13.68 31.12 0.43 -5.10 16 3 C 0.24 5.22 5.88 84.57 0.50 5.72 16 4 N -0.62 -16.84 2.83 -875.60 -2.48 -19.32 16 5 C 0.07 1.54 10.16 127.77 1.30 2.84 16 6 C 0.70 25.21 8.08 179.06 1.45 26.65 16 7 O -0.61 -24.56 13.09 -4.00 -0.05 -24.61 16 8 N -0.66 -25.82 5.12 -316.70 -1.62 -27.44 16 9 C 0.08 3.55 6.45 38.22 0.25 3.79 16 10 C -0.06 -2.50 8.71 22.37 0.19 -2.31 16 11 C -0.20 -7.15 10.02 22.33 0.22 -6.92 16 12 C 0.12 4.65 7.29 22.37 0.16 4.81 16 13 F -0.14 -5.34 17.26 44.97 0.78 -4.56 16 14 C -0.26 -11.51 9.14 22.41 0.20 -11.31 16 15 C 0.13 6.08 6.66 22.68 0.15 6.23 16 16 O -0.20 -11.05 9.17 -22.91 -0.21 -11.26 16 17 C -0.42 -22.49 9.49 67.91 0.64 -21.84 16 18 H 0.10 5.02 5.20 -2.92 -0.02 5.01 16 19 C -0.01 -0.40 5.49 84.82 0.47 0.06 16 20 N -0.90 -50.16 13.67 21.61 0.30 -49.86 16 21 Si 1.01 40.50 29.55 68.60 2.03 42.53 16 22 H -0.26 -9.82 7.11 99.48 0.71 -9.11 16 23 H -0.27 -10.47 7.11 99.48 0.71 -9.76 16 24 H -0.27 -10.22 7.11 99.48 0.71 -9.52 16 25 H 0.25 2.93 7.80 -4.41 -0.03 2.89 16 26 H 0.14 1.94 8.07 -2.38 -0.02 1.92 16 27 H 0.10 2.37 7.42 -2.39 -0.02 2.35 16 28 H 0.07 1.46 8.14 -2.39 -0.02 1.44 16 29 H 0.10 1.60 8.07 -2.39 -0.02 1.58 16 30 H 0.06 1.48 6.45 -2.39 -0.02 1.47 16 31 H 0.41 15.79 6.16 -92.71 -0.57 15.22 16 32 H 0.15 5.90 5.79 -2.91 -0.02 5.88 16 33 H 0.16 4.56 8.06 -2.91 -0.02 4.54 16 34 H 0.14 6.15 5.63 -2.91 -0.02 6.13 16 35 H 0.27 13.98 8.31 -92.70 -0.77 13.21 16 Total: -1.00 -67.61 317.44 6.71 -60.91 By element: Atomic # 1 Polarization: 32.67 SS G_CDS: 0.58 Total: 33.25 kcal Atomic # 6 Polarization: -7.02 SS G_CDS: 7.39 Total: 0.38 kcal Atomic # 7 Polarization: -92.82 SS G_CDS: -3.81 Total: -96.62 kcal Atomic # 8 Polarization: -35.61 SS G_CDS: -0.26 Total: -35.87 kcal Atomic # 9 Polarization: -5.34 SS G_CDS: 0.78 Total: -4.56 kcal Atomic # 14 Polarization: 40.50 SS G_CDS: 2.03 Total: 42.53 kcal Total: -67.61 6.71 -60.91 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000491101720.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 42.343 kcal (2) G-P(sol) polarization free energy of solvation -67.615 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -25.272 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.710 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.905 kcal (6) G-S(sol) free energy of system = (1) + (5) -18.562 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds