Wall clock time and date at job start Tue Mar 31 2020 06:23:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31519 * 1 3 3 Si 1.86803 * 119.99757 * 2 1 4 4 H 1.48499 * 109.46917 * 180.02562 * 3 2 1 5 5 H 1.48507 * 109.47086 * 299.99975 * 3 2 1 6 6 H 1.48504 * 109.47231 * 59.99891 * 3 2 1 7 7 C 1.37868 * 120.00174 * 180.02562 * 2 1 3 8 8 H 1.07997 * 120.00146 * 179.97438 * 7 2 1 9 9 C 1.50709 * 120.00032 * 359.97438 * 7 2 1 10 10 N 1.46500 * 109.46981 * 179.97438 * 9 7 2 11 11 C 1.46501 * 119.99476 * 90.00166 * 10 9 7 12 12 C 1.53003 * 109.47335 * 269.99694 * 11 10 9 13 13 C 1.53001 * 117.49749 * 116.25777 * 12 11 10 14 14 C 1.53001 * 117.49810 * 184.91384 * 12 11 10 15 15 C 1.34773 * 120.00363 * 270.00044 * 10 9 7 16 16 O 1.21754 * 119.99699 * 0.02562 * 15 10 9 17 17 C 1.41716 * 119.99866 * 180.02562 * 15 10 9 18 18 C 1.35227 * 119.99596 * 186.97364 * 17 15 10 19 19 C 1.46719 * 120.00093 * 7.30815 * 18 17 15 20 20 C 1.36522 * 123.29714 * 229.71501 * 19 18 17 21 21 S 1.70937 * 108.70987 * 179.90463 * 20 19 18 22 22 C 1.70731 * 91.21667 * 0.30323 * 21 20 19 23 23 N 1.28607 * 110.80797 * 359.82231 * 22 21 20 24 24 H 0.97004 * 120.00289 * 0.02562 * 1 2 3 25 25 H 1.08998 * 109.46759 * 60.00287 * 9 7 2 26 26 H 1.08996 * 109.47079 * 300.00296 * 9 7 2 27 27 H 1.09004 * 109.46866 * 149.99792 * 11 10 9 28 28 H 1.09005 * 109.47507 * 29.99866 * 11 10 9 29 29 H 1.09000 * 115.54624 * 330.58334 * 12 11 10 30 30 H 1.09004 * 117.49260 * 215.00336 * 13 12 11 31 31 H 1.08992 * 117.49956 * 0.02562 * 13 12 11 32 32 H 1.08997 * 117.49899 * 359.97438 * 14 12 11 33 33 H 1.09002 * 117.49621 * 144.99537 * 14 12 11 34 34 H 1.07996 * 120.00182 * 6.97096 * 17 15 10 35 35 H 1.07999 * 119.99936 * 187.30501 * 18 17 15 36 36 H 1.08004 * 125.64348 * 0.02687 * 20 19 18 37 37 H 1.07999 * 124.59476 * 179.78229 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.7091 1.3465 -0.0006 5 1 1.8903 2.3965 -1.2126 6 1 1.8903 2.3965 1.2125 7 6 2.0046 -1.1940 -0.0005 8 1 3.0845 -1.1939 -0.0010 9 6 1.2511 -2.4992 -0.0005 10 7 2.2031 -3.6126 -0.0018 11 6 2.6801 -4.1698 1.2664 12 6 3.9425 -3.4265 1.7075 13 6 3.8730 -2.6277 3.0106 14 6 4.6632 -3.9375 2.9567 15 6 2.6402 -4.1243 -1.1695 16 8 2.2441 -3.6608 -2.2234 17 6 3.5608 -5.2018 -1.1705 18 6 4.1074 -5.6228 -2.3335 19 6 3.8748 -4.8671 -3.5694 20 6 3.4590 -5.4451 -4.7343 21 16 3.3061 -4.2290 -5.9258 22 6 3.8086 -3.0302 -4.8188 23 7 4.0546 -3.5465 -3.6668 24 1 -0.4851 0.8401 -0.0004 25 1 0.6241 -2.5567 -0.8903 26 1 0.6247 -2.5571 0.8896 27 1 2.9083 -5.2276 1.1355 28 1 1.9072 -4.0564 2.0267 29 1 4.5562 -3.0231 0.9020 30 1 4.4410 -1.6988 3.0623 31 1 2.9281 -2.6321 3.5538 32 1 4.2377 -4.8031 3.4644 33 1 5.7510 -3.8705 2.9729 34 1 3.8258 -5.6865 -0.2426 35 1 4.7153 -6.5152 -2.3526 36 1 3.2579 -6.4964 -4.8785 37 1 3.9072 -1.9808 -5.0542 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000491493892.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:23:55 Heat of formation + Delta-G solvation = 54.574936 kcal Electronic energy + Delta-G solvation = -21197.972953 eV Core-core repulsion = 18068.677405 eV Total energy + Delta-G solvation = -3129.295548 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 292.099 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -41.20775 -40.02873 -38.25450 -36.03071 -34.64951 -34.21887 -30.96046 -29.67452 -27.63956 -26.38963 -25.40950 -23.34993 -23.10003 -21.81666 -20.88793 -19.65803 -18.66988 -18.52928 -18.08936 -17.04507 -16.50198 -16.37080 -15.78069 -15.76950 -15.41390 -14.71651 -14.50886 -14.29394 -14.19320 -14.06512 -13.63814 -13.44258 -13.20240 -12.94596 -12.68734 -12.53095 -12.35468 -12.25275 -12.22513 -11.60498 -11.21433 -10.87125 -10.72007 -10.61933 -10.50739 -10.38946 -10.31204 -9.33933 -9.12400 -8.19204 -6.30348 -0.22642 0.37977 0.68104 0.99304 1.30683 1.32756 1.44985 2.12743 2.32569 2.52456 2.74096 3.05889 3.09746 3.53886 3.85030 4.02538 4.05161 4.16173 4.26645 4.42202 4.44770 4.49507 4.57589 4.69466 4.85101 4.88715 4.99867 5.11731 5.13021 5.23065 5.30336 5.35619 5.39200 5.49746 5.63836 5.94883 6.13086 6.76720 6.91318 6.97366 7.34183 7.64170 8.87831 Molecular weight = 292.10amu Principal moments of inertia in cm(-1) A = 0.012595 B = 0.006169 C = 0.004646 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2222.536848 B = 4537.460543 C = 6025.395513 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.932 5.932 2 C 0.007 3.993 3 Si 0.958 3.042 4 H -0.273 1.273 5 H -0.282 1.282 6 H -0.269 1.269 7 C -0.512 4.512 8 H 0.045 0.955 9 C 0.269 3.731 10 N -0.601 5.601 11 C 0.144 3.856 12 C -0.173 4.173 13 C -0.188 4.188 14 C -0.141 4.141 15 C 0.522 3.478 16 O -0.573 6.573 17 C -0.198 4.198 18 C 0.001 3.999 19 C 0.065 3.935 20 C -0.288 4.288 21 S 0.215 5.785 22 C -0.026 4.026 23 N -0.455 5.455 24 H 0.264 0.736 25 H -0.008 1.008 26 H 0.016 0.984 27 H 0.111 0.889 28 H 0.072 0.928 29 H 0.074 0.926 30 H 0.077 0.923 31 H 0.090 0.910 32 H 0.119 0.881 33 H 0.104 0.896 34 H 0.171 0.829 35 H 0.193 0.807 36 H 0.205 0.795 37 H 0.196 0.804 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.704 -15.032 -3.285 18.744 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.573 5.573 2 C -0.191 4.191 3 Si 0.783 3.217 4 H -0.198 1.198 5 H -0.208 1.208 6 H -0.194 1.194 7 C -0.551 4.551 8 H 0.064 0.936 9 C 0.147 3.853 10 N -0.332 5.332 11 C 0.021 3.979 12 C -0.192 4.192 13 C -0.225 4.225 14 C -0.179 4.179 15 C 0.314 3.686 16 O -0.454 6.454 17 C -0.220 4.220 18 C -0.021 4.021 19 C -0.067 4.067 20 C -0.428 4.428 21 S 0.470 5.530 22 C -0.324 4.324 23 N -0.168 5.168 24 H 0.073 0.927 25 H 0.010 0.990 26 H 0.034 0.966 27 H 0.129 0.871 28 H 0.091 0.909 29 H 0.092 0.908 30 H 0.096 0.904 31 H 0.108 0.892 32 H 0.137 0.863 33 H 0.123 0.877 34 H 0.188 0.812 35 H 0.210 0.790 36 H 0.222 0.778 37 H 0.213 0.787 Dipole moment (debyes) X Y Z Total from point charges 10.208 -14.247 -4.417 18.075 hybrid contribution -0.076 1.328 0.883 1.596 sum 10.132 -12.919 -3.534 16.794 Atomic orbital electron populations 1.70059 1.07318 1.27621 1.52292 1.25739 0.95679 1.02557 0.95149 0.85509 0.78684 0.79552 0.77926 1.19755 1.20812 1.19427 1.21568 0.92718 0.91662 1.49106 0.93627 1.18603 0.87723 0.84126 0.94837 1.48116 1.44637 1.34092 1.06306 1.21300 0.94228 0.97552 0.84799 1.22578 0.99720 1.04961 0.91971 1.22929 1.02511 0.96094 1.00970 1.23067 0.99227 0.97159 0.98416 1.17862 0.83020 0.84320 0.83361 1.90762 1.59639 1.63147 1.31867 1.22503 0.99969 0.98711 1.00783 1.22294 0.94919 0.96941 0.87951 1.19880 1.02996 0.88215 0.95629 1.27041 1.11442 1.07234 0.97091 1.82104 1.60034 0.96614 1.14283 1.28470 1.05139 1.06219 0.92617 1.66914 1.16943 1.10699 1.22241 0.92717 0.98985 0.96642 0.87091 0.90924 0.90808 0.90411 0.89161 0.86269 0.87742 0.81205 0.79040 0.77780 0.78687 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -58.42 13.29 21.44 0.28 -58.13 16 2 C 0.01 0.39 5.46 84.65 0.46 0.85 16 3 Si 0.96 47.45 29.54 68.60 2.03 49.48 16 4 H -0.27 -13.35 7.11 99.48 0.71 -12.64 16 5 H -0.28 -13.79 7.11 99.48 0.71 -13.08 16 6 H -0.27 -12.57 7.11 99.48 0.71 -11.86 16 7 C -0.51 -30.78 9.39 25.60 0.24 -30.54 16 8 H 0.05 2.80 7.81 -2.91 -0.02 2.78 16 9 C 0.27 15.20 5.20 85.64 0.45 15.65 16 10 N -0.60 -26.97 2.46 -836.64 -2.05 -29.03 16 11 C 0.14 4.72 5.47 86.38 0.47 5.19 16 12 C -0.17 -5.55 6.01 -10.79 -0.06 -5.62 16 13 C -0.19 -5.79 10.18 30.62 0.31 -5.48 16 14 C -0.14 -3.17 10.25 30.62 0.31 -2.86 16 15 C 0.52 23.08 7.25 85.10 0.62 23.70 16 16 O -0.57 -30.43 12.22 -4.52 -0.06 -30.48 16 17 C -0.20 -6.10 9.14 22.43 0.21 -5.89 16 18 C 0.00 0.02 10.06 23.79 0.24 0.26 16 19 C 0.07 2.17 4.77 40.68 0.19 2.36 16 20 C -0.29 -7.57 10.99 67.42 0.74 -6.83 16 21 S 0.22 5.37 22.96 -56.49 -1.30 4.08 16 22 C -0.03 -0.87 12.16 130.71 1.59 0.72 16 23 N -0.45 -18.26 8.31 -192.58 -1.60 -19.86 16 24 H 0.26 15.52 8.31 -92.71 -0.77 14.75 16 25 H -0.01 -0.52 7.42 -2.39 -0.02 -0.54 16 26 H 0.02 0.90 7.89 -2.39 -0.02 0.88 16 27 H 0.11 2.65 6.00 -2.38 -0.01 2.63 16 28 H 0.07 2.38 7.63 -2.38 -0.02 2.36 16 29 H 0.07 2.84 8.14 -2.39 -0.02 2.82 16 30 H 0.08 2.52 8.14 -2.38 -0.02 2.50 16 31 H 0.09 2.80 8.03 -2.39 -0.02 2.78 16 32 H 0.12 2.03 8.14 -2.39 -0.02 2.01 16 33 H 0.10 2.04 8.14 -2.39 -0.02 2.02 16 34 H 0.17 3.71 6.03 -2.91 -0.02 3.70 16 35 H 0.19 2.87 8.06 -2.91 -0.02 2.84 16 36 H 0.21 3.74 8.06 -2.91 -0.02 3.71 16 37 H 0.20 5.92 8.06 -2.91 -0.02 5.90 16 Total: -1.00 -83.04 332.30 4.14 -78.90 By element: Atomic # 1 Polarization: 12.48 SS G_CDS: 1.07 Total: 13.55 kcal Atomic # 6 Polarization: -14.26 SS G_CDS: 5.77 Total: -8.49 kcal Atomic # 7 Polarization: -103.65 SS G_CDS: -3.37 Total: -107.02 kcal Atomic # 8 Polarization: -30.43 SS G_CDS: -0.06 Total: -30.48 kcal Atomic # 14 Polarization: 47.45 SS G_CDS: 2.03 Total: 49.48 kcal Atomic # 16 Polarization: 5.37 SS G_CDS: -1.30 Total: 4.08 kcal Total: -83.04 4.14 -78.90 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000491493892.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 133.470 kcal (2) G-P(sol) polarization free energy of solvation -83.040 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 50.431 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.144 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.895 kcal (6) G-S(sol) free energy of system = (1) + (5) 54.575 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds