Wall clock time and date at job start Tue Mar 31 2020 06:23:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31508 * 1 3 3 Si 1.86802 * 120.00642 * 2 1 4 4 H 1.48499 * 109.47205 * 270.00065 * 3 2 1 5 5 H 1.48507 * 109.46770 * 29.99443 * 3 2 1 6 6 H 1.48496 * 109.47457 * 149.99732 * 3 2 1 7 7 C 1.37881 * 119.99973 * 179.97438 * 2 1 3 8 8 H 1.08007 * 119.99433 * 0.02562 * 7 2 1 9 9 C 1.50699 * 120.00358 * 180.02562 * 7 2 1 10 10 N 1.46498 * 109.47119 * 180.02562 * 9 7 2 11 11 C 1.46496 * 119.99946 * 270.00140 * 10 9 7 12 12 C 1.53001 * 109.47145 * 270.00019 * 11 10 9 13 13 C 1.53005 * 117.49978 * 243.74631 * 12 11 10 14 14 C 1.53002 * 117.50155 * 175.09136 * 12 11 10 15 15 C 1.34774 * 119.99954 * 89.99926 * 10 9 7 16 16 O 1.21750 * 120.00224 * 0.02562 * 15 10 9 17 17 C 1.41720 * 120.00133 * 179.97438 * 15 10 9 18 18 C 1.35221 * 119.99893 * 180.02562 * 17 15 10 19 19 C 1.46723 * 119.99625 * 180.02562 * 18 17 15 20 20 C 1.36522 * 123.29751 * 180.02562 * 19 18 17 21 21 S 1.70940 * 108.70992 * 180.28242 * 20 19 18 22 22 C 1.70732 * 91.21646 * 359.65898 * 21 20 19 23 23 N 1.28613 * 110.80830 * 0.34870 * 22 21 20 24 24 H 0.97002 * 119.99311 * 0.02562 * 1 2 3 25 25 H 1.09004 * 109.47050 * 60.00279 * 9 7 2 26 26 H 1.08994 * 109.47249 * 300.00069 * 9 7 2 27 27 H 1.09004 * 109.47543 * 30.00067 * 11 10 9 28 28 H 1.09006 * 109.47470 * 150.00442 * 11 10 9 29 29 H 1.08994 * 115.55073 * 29.41532 * 12 11 10 30 30 H 1.09008 * 117.49673 * 0.02562 * 13 12 11 31 31 H 1.09000 * 117.49856 * 145.01789 * 13 12 11 32 32 H 1.09003 * 117.50037 * 214.98297 * 14 12 11 33 33 H 1.09007 * 117.49665 * 359.97438 * 14 12 11 34 34 H 1.08003 * 119.99665 * 0.02562 * 17 15 10 35 35 H 1.07993 * 120.00352 * 0.02562 * 18 17 15 36 36 H 1.08002 * 125.64146 * 0.02562 * 20 19 18 37 37 H 1.07997 * 124.59146 * 180.02562 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2493 1.6176 0.0000 4 1 2.4968 2.0463 -1.4001 5 1 1.4467 2.6527 0.7000 6 1 3.5468 1.4400 0.7001 7 6 2.0045 -1.1941 0.0005 8 1 1.4644 -2.1294 0.0005 9 6 3.5115 -1.1942 0.0011 10 7 3.9997 -2.5754 0.0010 11 6 4.2433 -3.2663 1.2696 12 6 5.6881 -3.0261 1.7120 13 6 6.6123 -4.2425 1.7976 14 6 6.1088 -3.5718 3.0781 15 6 4.2247 -3.2105 -1.1662 16 8 4.0227 -2.6362 -2.2206 17 6 4.6975 -4.5465 -1.1664 18 6 4.9238 -5.1835 -2.3375 19 6 5.4128 -6.5668 -2.3376 20 6 5.6639 -7.2729 -3.4788 21 16 6.2072 -8.8355 -3.0484 22 6 6.0805 -8.4616 -1.3873 23 7 5.6556 -7.2592 -1.2207 24 1 -0.4849 0.8401 -0.0004 25 1 3.8745 -0.6802 0.8912 26 1 3.8752 -0.6806 -0.8888 27 1 3.5622 -2.8824 2.0292 28 1 4.0764 -4.3356 1.1390 29 1 6.1275 -2.0820 1.3902 30 1 6.1910 -5.2139 1.5384 31 1 7.6597 -4.0985 1.5325 32 1 6.8251 -2.9867 3.6549 33 1 5.3560 -4.1016 3.6619 34 1 4.8772 -5.0558 -0.2311 35 1 4.7446 -4.6740 -3.2727 36 1 5.5362 -6.9063 -4.4866 37 1 6.3194 -9.1443 -0.5853 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000491493893.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:23:57 Heat of formation + Delta-G solvation = 61.277094 kcal Electronic energy + Delta-G solvation = -20478.756108 eV Core-core repulsion = 17349.751187 eV Total energy + Delta-G solvation = -3129.004921 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 292.099 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -39.99414 -39.27825 -37.20306 -34.56814 -33.26009 -32.40014 -30.24942 -28.45428 -26.48871 -25.49238 -23.80417 -22.24509 -21.65592 -20.66109 -19.71771 -18.60190 -17.51073 -17.13501 -16.84946 -15.74497 -15.38873 -14.88510 -14.74492 -14.57252 -14.01328 -13.79099 -13.54233 -13.47482 -13.09902 -12.57228 -12.29276 -11.89266 -11.73624 -11.46037 -11.38953 -11.34868 -10.86302 -10.53461 -10.34144 -10.23748 -10.07039 -9.97769 -9.85500 -9.82336 -9.48673 -9.04754 -8.54948 -8.33282 -7.64819 -6.04757 -4.03088 0.30231 1.14867 1.39245 1.52366 2.93698 3.32340 3.38257 3.40167 3.79118 3.98859 4.04594 4.08906 4.43339 4.81671 4.95041 4.98119 5.06901 5.07775 5.18237 5.27998 5.35423 5.50294 5.59394 5.74538 5.88671 5.98649 6.01239 6.10997 6.22343 6.33165 6.45106 6.51909 6.79898 7.01072 7.40114 7.44474 7.65408 8.29129 8.51193 8.96523 9.02368 9.55676 11.08721 Molecular weight = 292.10amu Principal moments of inertia in cm(-1) A = 0.018813 B = 0.003984 C = 0.003478 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1487.963555 B = 7027.115947 C = 8049.512732 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.898 5.898 2 C 0.072 3.928 3 Si 0.876 3.124 4 H -0.274 1.274 5 H -0.285 1.285 6 H -0.266 1.266 7 C -0.527 4.527 8 H 0.075 0.925 9 C 0.215 3.785 10 N -0.582 5.582 11 C 0.140 3.860 12 C -0.167 4.167 13 C -0.180 4.180 14 C -0.177 4.177 15 C 0.537 3.463 16 O -0.545 6.545 17 C -0.159 4.159 18 C -0.030 4.030 19 C 0.084 3.916 20 C -0.276 4.276 21 S 0.180 5.820 22 C 0.000 4.000 23 N -0.447 5.447 24 H 0.264 0.736 25 H 0.031 0.969 26 H 0.037 0.963 27 H 0.089 0.911 28 H 0.074 0.926 29 H 0.105 0.895 30 H 0.097 0.903 31 H 0.088 0.912 32 H 0.091 0.909 33 H 0.095 0.905 34 H 0.136 0.864 35 H 0.145 0.855 36 H 0.182 0.818 37 H 0.200 0.800 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 15.831 -17.985 -0.523 23.966 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.537 5.537 2 C -0.130 4.130 3 Si 0.703 3.297 4 H -0.199 1.199 5 H -0.211 1.211 6 H -0.190 1.190 7 C -0.566 4.566 8 H 0.093 0.907 9 C 0.094 3.906 10 N -0.312 5.312 11 C 0.016 3.984 12 C -0.187 4.187 13 C -0.217 4.217 14 C -0.214 4.214 15 C 0.328 3.672 16 O -0.426 6.426 17 C -0.182 4.182 18 C -0.053 4.053 19 C -0.047 4.047 20 C -0.416 4.416 21 S 0.434 5.566 22 C -0.299 4.299 23 N -0.160 5.160 24 H 0.074 0.926 25 H 0.049 0.951 26 H 0.055 0.945 27 H 0.108 0.892 28 H 0.092 0.908 29 H 0.124 0.876 30 H 0.115 0.885 31 H 0.106 0.894 32 H 0.109 0.891 33 H 0.113 0.887 34 H 0.153 0.847 35 H 0.163 0.837 36 H 0.200 0.800 37 H 0.217 0.783 Dipole moment (debyes) X Y Z Total from point charges 15.781 -18.232 -1.027 24.135 hybrid contribution 0.006 1.776 0.165 1.784 sum 15.788 -16.456 -0.861 22.821 Atomic orbital electron populations 1.69899 1.06192 1.26916 1.50674 1.24848 0.94748 0.98903 0.94482 0.86855 0.80214 0.83818 0.78848 1.19927 1.21101 1.19030 1.21339 0.89180 0.94857 1.51179 0.90728 1.19670 0.95649 0.77845 0.97399 1.47802 1.63155 1.15809 1.04415 1.21104 0.93194 0.97131 0.86969 1.22912 0.96896 0.98552 1.00317 1.23047 0.99467 0.97274 1.01882 1.22917 1.03621 1.04201 0.90700 1.16994 0.79188 0.86789 0.84277 1.90787 1.52744 1.68386 1.30644 1.22468 1.00440 0.95617 0.99635 1.21683 0.95230 0.88773 0.99588 1.19708 1.02388 0.96375 0.86237 1.26873 1.10819 0.99299 1.04625 1.82772 1.58677 1.11626 1.03490 1.28416 1.04298 0.96861 1.00349 1.66948 1.12947 1.05471 1.30600 0.92608 0.95138 0.94504 0.89230 0.90796 0.87639 0.88487 0.89378 0.89093 0.88676 0.84665 0.83728 0.80032 0.78335 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -28.09 13.96 55.43 0.77 -27.32 16 2 C 0.07 2.14 5.47 -17.82 -0.10 2.05 16 3 Si 0.88 21.92 27.47 -169.99 -4.67 17.25 16 4 H -0.27 -6.88 7.11 56.52 0.40 -6.48 16 5 H -0.29 -6.99 7.11 56.52 0.40 -6.58 16 6 H -0.27 -6.26 6.54 56.52 0.37 -5.89 16 7 C -0.53 -15.46 9.94 -34.44 -0.34 -15.81 16 8 H 0.07 2.40 8.06 -52.48 -0.42 1.98 16 9 C 0.22 5.40 4.23 -5.20 -0.02 5.38 16 10 N -0.58 -12.54 2.46 -178.44 -0.44 -12.98 16 11 C 0.14 2.38 5.38 -4.04 -0.02 2.36 16 12 C -0.17 -2.41 6.01 -90.62 -0.54 -2.96 16 13 C -0.18 -2.17 9.86 -26.69 -0.26 -2.43 16 14 C -0.18 -2.06 10.25 -26.70 -0.27 -2.33 16 15 C 0.54 11.65 7.45 -14.93 -0.11 11.54 16 16 O -0.55 -13.85 15.68 5.14 0.08 -13.77 16 17 C -0.16 -2.74 8.65 -39.33 -0.34 -3.08 16 18 C -0.03 -0.47 9.52 -37.23 -0.35 -0.82 16 19 C 0.08 1.10 6.66 -84.27 -0.56 0.54 16 20 C -0.28 -2.76 10.99 30.11 0.33 -2.43 16 21 S 0.18 1.30 22.96 -107.50 -2.47 -1.17 16 22 C 0.00 0.00 12.16 51.41 0.62 0.62 16 23 N -0.45 -5.54 9.96 -12.22 -0.12 -5.66 16 24 H 0.26 7.70 8.31 -40.82 -0.34 7.36 16 25 H 0.03 0.73 7.13 -51.93 -0.37 0.36 16 26 H 0.04 0.98 6.84 -51.93 -0.36 0.63 16 27 H 0.09 1.57 8.07 -51.93 -0.42 1.15 16 28 H 0.07 1.14 5.82 -51.93 -0.30 0.84 16 29 H 0.11 1.65 8.14 -51.93 -0.42 1.22 16 30 H 0.10 1.15 7.40 -51.92 -0.38 0.77 16 31 H 0.09 1.00 8.14 -51.93 -0.42 0.58 16 32 H 0.09 0.96 8.14 -51.93 -0.42 0.54 16 33 H 0.09 1.03 8.14 -51.93 -0.42 0.61 16 34 H 0.14 2.12 4.64 -52.48 -0.24 1.88 16 35 H 0.15 2.24 7.45 -52.49 -0.39 1.84 16 36 H 0.18 1.46 8.06 -52.49 -0.42 1.04 16 37 H 0.20 1.01 8.06 -52.49 -0.42 0.59 16 LS Contribution 332.20 15.07 5.01 5.01 Total: -1.00 -35.18 332.20 -8.40 -43.59 By element: Atomic # 1 Polarization: 7.02 SS G_CDS: -4.59 Total: 2.43 kcal Atomic # 6 Polarization: -5.41 SS G_CDS: -1.98 Total: -7.38 kcal Atomic # 7 Polarization: -46.17 SS G_CDS: 0.21 Total: -45.95 kcal Atomic # 8 Polarization: -13.85 SS G_CDS: 0.08 Total: -13.77 kcal Atomic # 14 Polarization: 21.92 SS G_CDS: -4.67 Total: 17.25 kcal Atomic # 16 Polarization: 1.30 SS G_CDS: -2.47 Total: -1.17 kcal Total LS contribution 5.01 Total: 5.01 kcal Total: -35.18 -8.40 -43.59 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000491493893.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 104.863 kcal (2) G-P(sol) polarization free energy of solvation -35.182 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 69.682 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.405 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.586 kcal (6) G-S(sol) free energy of system = (1) + (5) 61.277 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds