Wall clock time and date at job start Tue Mar 31 2020 06:23:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31508 * 1 3 3 Si 1.86802 * 120.00642 * 2 1 4 4 H 1.48499 * 109.47205 * 270.00065 * 3 2 1 5 5 H 1.48507 * 109.46770 * 29.99443 * 3 2 1 6 6 H 1.48496 * 109.47457 * 149.99732 * 3 2 1 7 7 C 1.37881 * 119.99973 * 179.97438 * 2 1 3 8 8 H 1.08007 * 119.99433 * 0.02562 * 7 2 1 9 9 C 1.50699 * 120.00358 * 180.02562 * 7 2 1 10 10 N 1.46498 * 109.47119 * 180.02562 * 9 7 2 11 11 C 1.46496 * 119.99946 * 270.00140 * 10 9 7 12 12 C 1.53001 * 109.47145 * 270.00019 * 11 10 9 13 13 C 1.53005 * 117.49978 * 243.74631 * 12 11 10 14 14 C 1.53002 * 117.50155 * 175.09136 * 12 11 10 15 15 C 1.34774 * 119.99954 * 89.99926 * 10 9 7 16 16 O 1.21750 * 120.00224 * 0.02562 * 15 10 9 17 17 C 1.41720 * 120.00133 * 179.97438 * 15 10 9 18 18 C 1.35221 * 119.99893 * 180.02562 * 17 15 10 19 19 C 1.46723 * 119.99625 * 180.02562 * 18 17 15 20 20 C 1.36522 * 123.29751 * 180.02562 * 19 18 17 21 21 S 1.70940 * 108.70992 * 180.28242 * 20 19 18 22 22 C 1.70732 * 91.21646 * 359.65898 * 21 20 19 23 23 N 1.28613 * 110.80830 * 0.34870 * 22 21 20 24 24 H 0.97002 * 119.99311 * 0.02562 * 1 2 3 25 25 H 1.09004 * 109.47050 * 60.00279 * 9 7 2 26 26 H 1.08994 * 109.47249 * 300.00069 * 9 7 2 27 27 H 1.09004 * 109.47543 * 30.00067 * 11 10 9 28 28 H 1.09006 * 109.47470 * 150.00442 * 11 10 9 29 29 H 1.08994 * 115.55073 * 29.41532 * 12 11 10 30 30 H 1.09008 * 117.49673 * 0.02562 * 13 12 11 31 31 H 1.09000 * 117.49856 * 145.01789 * 13 12 11 32 32 H 1.09003 * 117.50037 * 214.98297 * 14 12 11 33 33 H 1.09007 * 117.49665 * 359.97438 * 14 12 11 34 34 H 1.08003 * 119.99665 * 0.02562 * 17 15 10 35 35 H 1.07993 * 120.00352 * 0.02562 * 18 17 15 36 36 H 1.08002 * 125.64146 * 0.02562 * 20 19 18 37 37 H 1.07997 * 124.59146 * 180.02562 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2493 1.6176 0.0000 4 1 2.4968 2.0463 -1.4001 5 1 1.4467 2.6527 0.7000 6 1 3.5468 1.4400 0.7001 7 6 2.0045 -1.1941 0.0005 8 1 1.4644 -2.1294 0.0005 9 6 3.5115 -1.1942 0.0011 10 7 3.9997 -2.5754 0.0010 11 6 4.2433 -3.2663 1.2696 12 6 5.6881 -3.0261 1.7120 13 6 6.6123 -4.2425 1.7976 14 6 6.1088 -3.5718 3.0781 15 6 4.2247 -3.2105 -1.1662 16 8 4.0227 -2.6362 -2.2206 17 6 4.6975 -4.5465 -1.1664 18 6 4.9238 -5.1835 -2.3375 19 6 5.4128 -6.5668 -2.3376 20 6 5.6639 -7.2729 -3.4788 21 16 6.2072 -8.8355 -3.0484 22 6 6.0805 -8.4616 -1.3873 23 7 5.6556 -7.2592 -1.2207 24 1 -0.4849 0.8401 -0.0004 25 1 3.8745 -0.6802 0.8912 26 1 3.8752 -0.6806 -0.8888 27 1 3.5622 -2.8824 2.0292 28 1 4.0764 -4.3356 1.1390 29 1 6.1275 -2.0820 1.3902 30 1 6.1910 -5.2139 1.5384 31 1 7.6597 -4.0985 1.5325 32 1 6.8251 -2.9867 3.6549 33 1 5.3560 -4.1016 3.6619 34 1 4.8772 -5.0558 -0.2311 35 1 4.7446 -4.6740 -3.2727 36 1 5.5362 -6.9063 -4.4866 37 1 6.3194 -9.1443 -0.5853 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000491493893.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:23:57 Heat of formation + Delta-G solvation = 37.946331 kcal Electronic energy + Delta-G solvation = -20479.767806 eV Core-core repulsion = 17349.751187 eV Total energy + Delta-G solvation = -3130.016619 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 292.099 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -41.19832 -40.50653 -38.43073 -36.25321 -34.70082 -34.36595 -31.37726 -30.23056 -27.88199 -26.59591 -25.22666 -23.30549 -23.17652 -21.85733 -20.64131 -19.91369 -19.10113 -18.68619 -18.41318 -17.11277 -16.66450 -16.35788 -15.93647 -15.79004 -15.48704 -14.90388 -14.85208 -14.81448 -14.36126 -14.19829 -13.93405 -13.56839 -13.14850 -12.91355 -12.57335 -12.51246 -12.42445 -12.27724 -12.05013 -11.77640 -11.38806 -11.26918 -11.03842 -10.83950 -10.70826 -10.63954 -10.56930 -9.54871 -9.16204 -8.35050 -6.40335 -0.60536 0.34648 0.48722 0.79691 1.31492 1.35678 1.44604 1.89597 2.28325 2.30575 2.57200 2.96942 2.98997 3.22386 3.72191 3.88560 4.01563 4.09106 4.14855 4.21337 4.30570 4.37778 4.43821 4.66331 4.71938 4.80236 4.84761 4.92150 5.02140 5.06671 5.22078 5.27534 5.32791 5.33420 5.44017 5.62632 6.23037 6.60118 6.64098 6.69487 7.18924 7.35831 8.82129 Molecular weight = 292.10amu Principal moments of inertia in cm(-1) A = 0.018813 B = 0.003984 C = 0.003478 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1487.963555 B = 7027.115947 C = 8049.512732 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.944 5.944 2 C 0.013 3.987 3 Si 0.949 3.051 4 H -0.275 1.275 5 H -0.272 1.272 6 H -0.240 1.240 7 C -0.538 4.538 8 H 0.027 0.973 9 C 0.226 3.774 10 N -0.590 5.590 11 C 0.141 3.859 12 C -0.190 4.190 13 C -0.165 4.165 14 C -0.157 4.157 15 C 0.533 3.467 16 O -0.600 6.600 17 C -0.191 4.191 18 C 0.003 3.997 19 C 0.043 3.957 20 C -0.274 4.274 21 S 0.269 5.731 22 C -0.008 4.008 23 N -0.480 5.480 24 H 0.269 0.731 25 H 0.049 0.951 26 H 0.020 0.980 27 H 0.077 0.923 28 H 0.088 0.912 29 H 0.091 0.909 30 H 0.100 0.900 31 H 0.098 0.902 32 H 0.107 0.893 33 H 0.105 0.895 34 H 0.151 0.849 35 H 0.136 0.864 36 H 0.198 0.802 37 H 0.233 0.767 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 18.676 -20.029 -0.067 27.385 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.584 5.584 2 C -0.185 4.185 3 Si 0.771 3.229 4 H -0.200 1.200 5 H -0.197 1.197 6 H -0.163 1.163 7 C -0.576 4.576 8 H 0.045 0.955 9 C 0.104 3.896 10 N -0.319 5.319 11 C 0.018 3.982 12 C -0.209 4.209 13 C -0.202 4.202 14 C -0.194 4.194 15 C 0.326 3.674 16 O -0.485 6.485 17 C -0.214 4.214 18 C -0.020 4.020 19 C -0.089 4.089 20 C -0.416 4.416 21 S 0.526 5.474 22 C -0.306 4.306 23 N -0.194 5.194 24 H 0.078 0.922 25 H 0.067 0.933 26 H 0.038 0.962 27 H 0.095 0.905 28 H 0.106 0.894 29 H 0.110 0.890 30 H 0.119 0.881 31 H 0.116 0.884 32 H 0.125 0.875 33 H 0.124 0.876 34 H 0.168 0.832 35 H 0.154 0.846 36 H 0.215 0.785 37 H 0.249 0.751 Dipole moment (debyes) X Y Z Total from point charges 18.654 -20.331 -0.524 27.597 hybrid contribution -0.870 2.087 -0.134 2.265 sum 17.784 -18.244 -0.658 25.487 Atomic orbital electron populations 1.70049 1.08181 1.28376 1.51834 1.25843 0.95696 1.03285 0.93709 0.85704 0.79829 0.78282 0.79084 1.20016 1.19677 1.16323 1.21539 0.91464 0.93285 1.51332 0.95493 1.19317 0.92777 0.80385 0.97116 1.47858 1.62924 1.14827 1.06279 1.21256 0.95009 0.97321 0.84591 1.22651 0.95435 0.99324 1.03501 1.23082 0.99327 0.96161 1.01643 1.23041 1.03460 1.03085 0.89806 1.17678 0.78150 0.88155 0.83427 1.90733 1.55573 1.69867 1.32294 1.22120 1.04550 0.93657 1.01075 1.21854 0.91464 0.90113 0.98530 1.19483 1.05837 0.95732 0.87851 1.27307 1.08413 1.01072 1.04766 1.82548 1.55675 1.08012 1.01212 1.29024 1.02800 0.96193 1.02630 1.66905 1.14539 1.07049 1.30892 0.92179 0.93339 0.96219 0.90455 0.89418 0.89041 0.88116 0.88380 0.87490 0.87648 0.83172 0.84596 0.78508 0.75081 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -61.27 13.96 21.45 0.30 -60.97 16 2 C 0.01 0.78 5.47 84.66 0.46 1.24 16 3 Si 0.95 45.93 27.47 68.60 1.88 47.82 16 4 H -0.27 -13.30 7.11 99.48 0.71 -12.59 16 5 H -0.27 -12.49 7.11 99.48 0.71 -11.78 16 6 H -0.24 -10.54 6.54 99.48 0.65 -9.89 16 7 C -0.54 -33.20 9.94 25.60 0.25 -32.95 16 8 H 0.03 1.86 8.06 -2.91 -0.02 1.83 16 9 C 0.23 11.78 4.23 85.63 0.36 12.14 16 10 N -0.59 -26.65 2.46 -836.67 -2.05 -28.71 16 11 C 0.14 4.91 5.38 86.38 0.46 5.37 16 12 C -0.19 -5.36 6.01 -10.79 -0.06 -5.43 16 13 C -0.17 -3.67 9.86 30.62 0.30 -3.37 16 14 C -0.16 -3.29 10.25 30.62 0.31 -2.97 16 15 C 0.53 24.42 7.45 85.10 0.63 25.06 16 16 O -0.60 -32.48 15.68 -4.51 -0.07 -32.55 16 17 C -0.19 -6.85 8.65 22.43 0.19 -6.65 16 18 C 0.00 0.09 9.52 23.79 0.23 0.32 16 19 C 0.04 1.06 6.66 40.69 0.27 1.33 16 20 C -0.27 -4.81 10.99 67.42 0.74 -4.07 16 21 S 0.27 2.82 22.96 -56.49 -1.30 1.52 16 22 C -0.01 -0.11 12.16 130.71 1.59 1.48 16 23 N -0.48 -10.99 9.96 -192.58 -1.92 -12.91 16 24 H 0.27 16.15 8.31 -92.71 -0.77 15.38 16 25 H 0.05 2.33 7.13 -2.39 -0.02 2.31 16 26 H 0.02 1.09 6.84 -2.39 -0.02 1.08 16 27 H 0.08 2.82 8.07 -2.39 -0.02 2.80 16 28 H 0.09 2.76 5.82 -2.38 -0.01 2.74 16 29 H 0.09 2.85 8.14 -2.39 -0.02 2.83 16 30 H 0.10 2.19 7.40 -2.38 -0.02 2.17 16 31 H 0.10 2.00 8.14 -2.39 -0.02 1.98 16 32 H 0.11 1.94 8.14 -2.39 -0.02 1.92 16 33 H 0.11 2.01 8.14 -2.38 -0.02 1.99 16 34 H 0.15 4.78 4.64 -2.91 -0.01 4.77 16 35 H 0.14 4.41 7.45 -2.91 -0.02 4.39 16 36 H 0.20 2.68 8.06 -2.91 -0.02 2.65 16 37 H 0.23 1.37 8.06 -2.91 -0.02 1.34 16 Total: -1.00 -82.00 332.20 3.62 -78.38 By element: Atomic # 1 Polarization: 14.90 SS G_CDS: 1.03 Total: 15.93 kcal Atomic # 6 Polarization: -14.25 SS G_CDS: 5.75 Total: -8.50 kcal Atomic # 7 Polarization: -98.91 SS G_CDS: -3.67 Total: -102.59 kcal Atomic # 8 Polarization: -32.48 SS G_CDS: -0.07 Total: -32.55 kcal Atomic # 14 Polarization: 45.93 SS G_CDS: 1.88 Total: 47.82 kcal Atomic # 16 Polarization: 2.82 SS G_CDS: -1.30 Total: 1.52 kcal Total: -82.00 3.62 -78.38 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000491493893.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 116.322 kcal (2) G-P(sol) polarization free energy of solvation -81.996 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 34.326 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.620 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.375 kcal (6) G-S(sol) free energy of system = (1) + (5) 37.946 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds