Wall clock time and date at job start Tue Mar 31 2020 06:55:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17397 * 1 3 3 C 1.47198 * 179.97438 * 2 1 4 4 N 1.46498 * 109.47338 * 76.24363 * 3 2 1 5 5 C 1.36939 * 120.00200 * 263.91631 * 4 3 2 6 6 H 1.07998 * 120.00119 * 199.38195 * 5 4 3 7 7 C 1.38813 * 119.99702 * 19.37940 * 5 4 3 8 8 N 1.31617 * 120.00293 * 22.29905 * 7 5 4 9 9 Si 1.86798 * 119.99840 * 202.29347 * 7 5 4 10 10 H 1.48504 * 109.47154 * 0.02562 * 9 7 5 11 11 H 1.48499 * 109.47079 * 120.00005 * 9 7 5 12 12 H 1.48500 * 109.47502 * 240.00272 * 9 7 5 13 13 C 1.46506 * 119.99925 * 83.90739 * 4 3 2 14 14 C 1.50698 * 109.46639 * 90.00538 * 13 4 3 15 15 O 1.21281 * 120.00591 * 0.02562 * 14 13 4 16 16 N 1.34778 * 119.99795 * 180.02562 * 14 13 4 17 17 C 1.46504 * 119.99911 * 179.72489 * 16 14 13 18 18 H 1.09000 * 109.47203 * 35.27656 * 17 16 14 19 19 C 1.53001 * 109.47091 * 275.27403 * 17 16 14 20 20 C 1.50698 * 109.47182 * 155.27492 * 17 16 14 21 21 C 1.33386 * 125.20572 * 220.00169 * 20 17 16 22 22 C 1.38423 * 114.92539 * 179.97438 * 21 20 17 23 23 C 1.33393 * 114.92087 * 359.97438 * 22 21 20 24 24 S 1.75880 * 125.20314 * 39.69061 * 20 17 16 25 25 H 4.40641 * 5.51270 * 180.02562 * 4 1 2 26 26 H 1.09003 * 109.47615 * 316.24194 * 3 2 1 27 27 H 1.09006 * 109.47052 * 196.23995 * 3 2 1 28 28 H 0.96999 * 120.00388 * 179.97438 * 8 7 5 29 29 H 1.08999 * 109.47142 * 330.00492 * 13 4 3 30 30 H 1.09002 * 109.47109 * 210.00176 * 13 4 3 31 31 H 0.97003 * 120.00337 * 359.97438 * 16 14 13 32 32 H 1.08992 * 109.46933 * 60.00192 * 19 17 16 33 33 H 1.08997 * 109.46864 * 180.02562 * 19 17 16 34 34 H 1.08993 * 109.46957 * 300.00075 * 19 17 16 35 35 H 1.08004 * 122.53686 * 359.97438 * 21 20 17 36 36 H 1.08000 * 122.54147 * 180.02562 * 22 21 20 37 37 H 1.07991 * 125.20221 * 179.97438 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1740 0.0000 0.0000 3 6 2.6459 0.0007 0.0000 4 7 3.1345 -0.3276 -1.3416 5 6 3.4818 -1.6163 -1.6475 6 1 4.1203 -1.8168 -2.4952 7 6 3.0133 -2.6651 -0.8680 8 7 1.9286 -2.5097 -0.1389 9 14 3.9222 -4.2969 -0.8540 10 1 5.1024 -4.2140 -1.7516 11 1 4.3725 -4.6009 0.5280 12 1 3.0148 -5.3731 -1.3270 13 6 3.2512 0.7230 -2.3560 14 6 4.6232 1.3421 -2.2822 15 8 5.4247 0.9447 -1.4633 16 7 4.9595 2.3376 -3.1262 17 6 6.2912 2.9436 -3.0505 18 1 7.0237 2.1798 -2.7894 19 6 6.2932 4.0387 -1.9820 20 6 6.6464 3.5443 -4.3861 21 6 7.8508 3.4918 -4.9571 22 6 7.9398 4.1157 -6.1896 23 6 6.8075 4.6745 -6.6198 24 16 5.5345 4.4154 -5.4341 25 1 -1.0499 0.0002 0.0000 26 1 3.0097 -0.7414 0.7107 27 1 3.0088 0.9875 0.2874 28 1 1.6010 -3.2426 0.4055 29 1 2.4969 1.4886 -2.1747 30 1 3.1002 0.2912 -3.3453 31 1 4.3187 2.6553 -3.7815 32 1 6.0363 3.6042 -1.0160 33 1 7.2838 4.4898 -1.9260 34 1 5.5608 4.8024 -2.2432 35 1 8.6927 2.9997 -4.4929 36 1 8.8563 4.1469 -6.7600 37 1 6.6898 5.2024 -7.5545 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000491740054.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:55:22 Heat of formation + Delta-G solvation = 85.307242 kcal Electronic energy + Delta-G solvation = -20455.799494 eV Core-core repulsion = 17327.836598 eV Total energy + Delta-G solvation = -3127.962895 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 292.099 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -39.33825 -37.98133 -35.90290 -34.86218 -31.60508 -31.53470 -30.78811 -28.58885 -27.10101 -25.87838 -24.53512 -22.64722 -21.41713 -20.29582 -19.03538 -17.76304 -17.46719 -16.47620 -16.17268 -15.57519 -15.27221 -14.82210 -14.62879 -13.90213 -13.66456 -13.39397 -13.22950 -12.99499 -12.83965 -12.58183 -12.41772 -12.27781 -11.90769 -11.48166 -11.43988 -11.22438 -10.92414 -10.80373 -10.68297 -10.21054 -9.98617 -9.36589 -8.95231 -8.93680 -8.73465 -8.68122 -8.64109 -8.40557 -6.98993 -5.76972 -3.18503 0.79920 1.41537 1.80845 2.55101 3.37290 3.40024 3.49500 3.52281 3.57892 4.19152 4.39463 4.49742 4.57747 4.86629 5.19047 5.27095 5.33329 5.36063 5.39323 5.57137 5.62136 5.74087 5.84245 5.87936 6.03276 6.07538 6.11830 6.21503 6.27131 6.28386 6.73798 6.79592 7.24715 7.42266 7.77798 7.91653 8.28000 8.90154 9.10443 9.19779 9.76097 10.20891 11.26758 Molecular weight = 292.10amu Principal moments of inertia in cm(-1) A = 0.021348 B = 0.003803 C = 0.003511 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1311.258581 B = 7360.023342 C = 7972.024762 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.297 4.297 2 C -0.097 4.097 3 C 0.271 3.729 4 N -0.560 5.560 5 C -0.260 4.260 6 H 0.072 0.928 7 C 0.007 3.993 8 N -0.886 5.886 9 Si 0.900 3.100 10 H -0.278 1.278 11 H -0.288 1.288 12 H -0.292 1.292 13 C 0.132 3.868 14 C 0.482 3.518 15 O -0.518 6.518 16 N -0.742 5.742 17 C 0.212 3.788 18 H 0.102 0.898 19 C -0.157 4.157 20 C -0.175 4.175 21 C -0.135 4.135 22 C -0.132 4.132 23 C -0.218 4.218 24 S 0.103 5.897 25 H 0.191 0.809 26 H 0.094 0.906 27 H 0.037 0.963 28 H 0.254 0.746 29 H 0.070 0.930 30 H 0.081 0.919 31 H 0.392 0.608 32 H 0.070 0.930 33 H 0.063 0.937 34 H 0.056 0.944 35 H 0.141 0.859 36 H 0.140 0.860 37 H 0.163 0.837 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.481 16.174 -10.226 20.546 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.316 4.316 2 C -0.100 4.100 3 C 0.146 3.854 4 N -0.278 5.278 5 C -0.389 4.389 6 H 0.090 0.910 7 C -0.192 4.192 8 N -0.528 5.528 9 Si 0.729 3.271 10 H -0.203 1.203 11 H -0.215 1.215 12 H -0.219 1.219 13 C 0.000 4.000 14 C 0.267 3.733 15 O -0.391 6.391 16 N -0.399 5.399 17 C 0.105 3.895 18 H 0.120 0.880 19 C -0.215 4.215 20 C -0.293 4.293 21 C -0.166 4.166 22 C -0.162 4.162 23 C -0.353 4.353 24 S 0.366 5.634 25 H 0.208 0.792 26 H 0.112 0.888 27 H 0.055 0.945 28 H 0.064 0.936 29 H 0.088 0.912 30 H 0.099 0.901 31 H 0.226 0.774 32 H 0.089 0.911 33 H 0.082 0.918 34 H 0.075 0.925 35 H 0.159 0.841 36 H 0.157 0.843 37 H 0.181 0.819 Dipole moment (debyes) X Y Z Total from point charges 6.474 16.070 -9.401 19.711 hybrid contribution 1.435 -1.163 -0.567 1.932 sum 7.910 14.907 -9.968 19.600 Atomic orbital electron populations 1.24165 0.95283 1.08242 1.03952 1.24238 0.95219 0.93714 0.96785 1.17667 0.82636 0.97324 0.87771 1.43569 1.73517 1.03921 1.06758 1.19126 1.24308 0.81596 1.13821 0.91024 1.24874 0.96109 0.97766 1.00463 1.70144 1.19322 1.31814 1.31547 0.86272 0.79568 0.83629 0.77587 1.20278 1.21465 1.21904 1.20672 0.90804 0.92862 0.95654 1.23267 0.92646 0.77741 0.79643 1.90637 1.51941 1.60495 1.36069 1.46566 1.14544 1.39151 1.39598 1.19240 0.87309 0.94764 0.88231 0.88031 1.22181 1.02036 0.98037 0.99283 1.24811 0.97519 1.05867 1.01071 1.20130 0.97709 1.02950 0.95782 1.20166 0.99109 1.00251 0.96705 1.25621 0.96576 1.08851 1.04274 1.84222 1.14034 1.53199 1.11953 0.79193 0.88793 0.94476 0.93560 0.91218 0.90085 0.77422 0.91077 0.91795 0.92475 0.84102 0.84279 0.81946 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.30 -6.74 19.25 29.55 0.57 -6.17 16 2 C -0.10 -2.37 11.50 -37.12 -0.43 -2.79 16 3 C 0.27 6.67 5.41 -6.83 -0.04 6.63 16 4 N -0.56 -13.97 1.98 -177.94 -0.35 -14.32 16 5 C -0.26 -7.16 9.63 -15.06 -0.14 -7.31 16 6 H 0.07 1.98 7.92 -52.49 -0.42 1.56 16 7 C 0.01 0.20 4.82 -17.43 -0.08 0.12 16 8 N -0.89 -25.44 9.61 55.49 0.53 -24.90 16 9 Si 0.90 22.17 29.61 -169.99 -5.03 17.14 16 10 H -0.28 -6.80 7.11 56.52 0.40 -6.40 16 11 H -0.29 -7.15 7.11 56.52 0.40 -6.75 16 12 H -0.29 -7.20 7.11 56.52 0.40 -6.80 16 13 C 0.13 2.63 6.16 -5.19 -0.03 2.60 16 14 C 0.48 9.11 7.86 -10.99 -0.09 9.02 16 15 O -0.52 -11.91 16.10 5.56 0.09 -11.83 16 16 N -0.74 -10.70 5.06 -54.93 -0.28 -10.97 16 17 C 0.21 2.78 3.00 -69.08 -0.21 2.57 16 18 H 0.10 1.52 7.56 -51.93 -0.39 1.13 16 19 C -0.16 -1.87 9.46 37.16 0.35 -1.52 16 20 C -0.17 -1.97 5.45 -36.00 -0.20 -2.16 16 21 C -0.14 -1.39 10.04 -41.21 -0.41 -1.81 16 22 C -0.13 -1.18 10.18 -41.21 -0.42 -1.60 16 23 C -0.22 -1.89 11.23 29.04 0.33 -1.56 16 24 S 0.10 1.00 22.30 -107.50 -2.40 -1.40 16 25 H 0.19 3.58 7.80 -54.09 -0.42 3.16 16 26 H 0.09 2.55 6.59 -51.93 -0.34 2.21 16 27 H 0.04 0.83 8.12 -51.93 -0.42 0.41 16 28 H 0.25 7.15 8.31 -40.82 -0.34 6.81 16 29 H 0.07 1.24 8.07 -51.93 -0.42 0.82 16 30 H 0.08 1.53 8.04 -51.93 -0.42 1.11 16 31 H 0.39 4.78 7.67 -40.82 -0.31 4.47 16 32 H 0.07 0.99 8.14 -51.93 -0.42 0.56 16 33 H 0.06 0.66 8.14 -51.93 -0.42 0.24 16 34 H 0.06 0.63 8.14 -51.93 -0.42 0.20 16 35 H 0.14 1.29 8.06 -52.48 -0.42 0.87 16 36 H 0.14 0.95 8.06 -52.49 -0.42 0.52 16 37 H 0.16 1.02 8.06 -52.49 -0.42 0.60 16 LS Contribution 338.63 15.07 5.10 5.10 Total: -1.00 -32.48 338.63 -7.95 -40.43 By element: Atomic # 1 Polarization: 9.55 SS G_CDS: -4.82 Total: 4.74 kcal Atomic # 6 Polarization: -3.18 SS G_CDS: -0.80 Total: -3.98 kcal Atomic # 7 Polarization: -50.10 SS G_CDS: -0.10 Total: -50.20 kcal Atomic # 8 Polarization: -11.91 SS G_CDS: 0.09 Total: -11.83 kcal Atomic # 14 Polarization: 22.17 SS G_CDS: -5.03 Total: 17.14 kcal Atomic # 16 Polarization: 1.00 SS G_CDS: -2.40 Total: -1.40 kcal Total LS contribution 5.10 Total: 5.10 kcal Total: -32.48 -7.95 -40.43 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000491740054.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 125.740 kcal (2) G-P(sol) polarization free energy of solvation -32.483 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 93.258 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.951 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.433 kcal (6) G-S(sol) free energy of system = (1) + (5) 85.307 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds