Wall clock time and date at job start Tue Mar 31 2020 06:55:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17397 * 1 3 3 C 1.47198 * 179.97438 * 2 1 4 4 N 1.46498 * 109.47338 * 76.24363 * 3 2 1 5 5 C 1.36939 * 120.00200 * 263.91631 * 4 3 2 6 6 H 1.07998 * 120.00119 * 199.38195 * 5 4 3 7 7 C 1.38813 * 119.99702 * 19.37940 * 5 4 3 8 8 N 1.31617 * 120.00293 * 22.29905 * 7 5 4 9 9 Si 1.86798 * 119.99840 * 202.29347 * 7 5 4 10 10 H 1.48504 * 109.47154 * 0.02562 * 9 7 5 11 11 H 1.48499 * 109.47079 * 120.00005 * 9 7 5 12 12 H 1.48500 * 109.47502 * 240.00272 * 9 7 5 13 13 C 1.46506 * 119.99925 * 83.90739 * 4 3 2 14 14 C 1.50698 * 109.46639 * 90.00538 * 13 4 3 15 15 O 1.21281 * 120.00591 * 0.02562 * 14 13 4 16 16 N 1.34778 * 119.99795 * 180.02562 * 14 13 4 17 17 C 1.46504 * 119.99911 * 179.72489 * 16 14 13 18 18 H 1.09000 * 109.47203 * 35.27656 * 17 16 14 19 19 C 1.53001 * 109.47091 * 275.27403 * 17 16 14 20 20 C 1.50698 * 109.47182 * 155.27492 * 17 16 14 21 21 C 1.33386 * 125.20572 * 220.00169 * 20 17 16 22 22 C 1.38423 * 114.92539 * 179.97438 * 21 20 17 23 23 C 1.33393 * 114.92087 * 359.97438 * 22 21 20 24 24 S 1.75880 * 125.20314 * 39.69061 * 20 17 16 25 25 H 4.40641 * 5.51270 * 180.02562 * 4 1 2 26 26 H 1.09003 * 109.47615 * 316.24194 * 3 2 1 27 27 H 1.09006 * 109.47052 * 196.23995 * 3 2 1 28 28 H 0.96999 * 120.00388 * 179.97438 * 8 7 5 29 29 H 1.08999 * 109.47142 * 330.00492 * 13 4 3 30 30 H 1.09002 * 109.47109 * 210.00176 * 13 4 3 31 31 H 0.97003 * 120.00337 * 359.97438 * 16 14 13 32 32 H 1.08992 * 109.46933 * 60.00192 * 19 17 16 33 33 H 1.08997 * 109.46864 * 180.02562 * 19 17 16 34 34 H 1.08993 * 109.46957 * 300.00075 * 19 17 16 35 35 H 1.08004 * 122.53686 * 359.97438 * 21 20 17 36 36 H 1.08000 * 122.54147 * 180.02562 * 22 21 20 37 37 H 1.07991 * 125.20221 * 179.97438 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1740 0.0000 0.0000 3 6 2.6459 0.0007 0.0000 4 7 3.1345 -0.3276 -1.3416 5 6 3.4818 -1.6163 -1.6475 6 1 4.1203 -1.8168 -2.4952 7 6 3.0133 -2.6651 -0.8680 8 7 1.9286 -2.5097 -0.1389 9 14 3.9222 -4.2969 -0.8540 10 1 5.1024 -4.2140 -1.7516 11 1 4.3725 -4.6009 0.5280 12 1 3.0148 -5.3731 -1.3270 13 6 3.2512 0.7230 -2.3560 14 6 4.6232 1.3421 -2.2822 15 8 5.4247 0.9447 -1.4633 16 7 4.9595 2.3376 -3.1262 17 6 6.2912 2.9436 -3.0505 18 1 7.0237 2.1798 -2.7894 19 6 6.2932 4.0387 -1.9820 20 6 6.6464 3.5443 -4.3861 21 6 7.8508 3.4918 -4.9571 22 6 7.9398 4.1157 -6.1896 23 6 6.8075 4.6745 -6.6198 24 16 5.5345 4.4154 -5.4341 25 1 -1.0499 0.0002 0.0000 26 1 3.0097 -0.7414 0.7107 27 1 3.0088 0.9875 0.2874 28 1 1.6010 -3.2426 0.4055 29 1 2.4969 1.4886 -2.1747 30 1 3.1002 0.2912 -3.3453 31 1 4.3187 2.6553 -3.7815 32 1 6.0363 3.6042 -1.0160 33 1 7.2838 4.4898 -1.9260 34 1 5.5608 4.8024 -2.2432 35 1 8.6927 2.9997 -4.4929 36 1 8.8563 4.1469 -6.7600 37 1 6.6898 5.2024 -7.5545 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000491740054.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:55:21 Heat of formation + Delta-G solvation = 66.077158 kcal Electronic energy + Delta-G solvation = -20456.633373 eV Core-core repulsion = 17327.836598 eV Total energy + Delta-G solvation = -3128.796775 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 292.099 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -40.74752 -38.90727 -37.61866 -36.20293 -33.53312 -33.23397 -32.20892 -29.47188 -28.73292 -27.85349 -25.46129 -24.13965 -22.74286 -21.57047 -20.01661 -19.38141 -18.85360 -18.08141 -17.66078 -16.97772 -16.36675 -16.24208 -16.17466 -15.52274 -15.13894 -14.97761 -14.73895 -14.21696 -14.02056 -13.57772 -13.50839 -13.41299 -13.14852 -13.09384 -12.88221 -12.78620 -12.52725 -12.33510 -12.24196 -11.98756 -11.61341 -11.08394 -10.79825 -10.60173 -10.33566 -10.12925 -9.61748 -9.38493 -8.95094 -7.86056 -5.28112 0.03640 0.65091 1.07052 1.43394 1.48051 1.57335 1.78092 1.86981 2.17934 2.44939 2.52856 2.60530 3.28161 3.56522 3.77017 4.05173 4.16250 4.19680 4.28041 4.33369 4.55300 4.58966 4.66400 4.68958 4.74356 4.90768 4.92586 5.15187 5.20783 5.24570 5.37103 5.48765 5.61519 5.62335 5.66085 6.23203 6.62111 7.05892 7.36028 7.43830 7.77610 8.18726 9.15529 Molecular weight = 292.10amu Principal moments of inertia in cm(-1) A = 0.021348 B = 0.003803 C = 0.003511 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1311.258581 B = 7360.023342 C = 7972.024762 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.277 4.277 2 C -0.139 4.139 3 C 0.278 3.722 4 N -0.578 5.578 5 C -0.266 4.266 6 H 0.064 0.936 7 C -0.039 4.039 8 N -0.906 5.906 9 Si 0.956 3.044 10 H -0.276 1.276 11 H -0.292 1.292 12 H -0.289 1.289 13 C 0.129 3.871 14 C 0.490 3.510 15 O -0.565 6.565 16 N -0.723 5.723 17 C 0.214 3.786 18 H 0.078 0.922 19 C -0.150 4.150 20 C -0.201 4.201 21 C -0.134 4.134 22 C -0.142 4.142 23 C -0.208 4.208 24 S 0.106 5.894 25 H 0.227 0.773 26 H 0.059 0.941 27 H 0.052 0.948 28 H 0.248 0.752 29 H 0.093 0.907 30 H 0.091 0.909 31 H 0.406 0.594 32 H 0.046 0.954 33 H 0.080 0.920 34 H 0.068 0.932 35 H 0.146 0.854 36 H 0.163 0.837 37 H 0.190 0.810 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.530 17.678 -12.147 22.732 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.296 4.296 2 C -0.142 4.142 3 C 0.153 3.847 4 N -0.296 5.296 5 C -0.395 4.395 6 H 0.082 0.918 7 C -0.236 4.236 8 N -0.550 5.550 9 Si 0.785 3.215 10 H -0.201 1.201 11 H -0.219 1.219 12 H -0.216 1.216 13 C -0.001 4.001 14 C 0.275 3.725 15 O -0.442 6.442 16 N -0.379 5.379 17 C 0.107 3.893 18 H 0.096 0.904 19 C -0.208 4.208 20 C -0.318 4.318 21 C -0.165 4.165 22 C -0.172 4.172 23 C -0.344 4.344 24 S 0.369 5.631 25 H 0.243 0.757 26 H 0.077 0.923 27 H 0.070 0.930 28 H 0.058 0.942 29 H 0.111 0.889 30 H 0.109 0.891 31 H 0.242 0.758 32 H 0.065 0.935 33 H 0.099 0.901 34 H 0.087 0.913 35 H 0.164 0.836 36 H 0.180 0.820 37 H 0.207 0.793 Dipole moment (debyes) X Y Z Total from point charges 6.525 17.634 -11.379 21.977 hybrid contribution 1.446 -1.497 -0.083 2.082 sum 7.970 16.137 -11.462 21.338 Atomic orbital electron populations 1.25000 0.96208 1.06289 1.02084 1.24391 0.95756 0.95476 0.98550 1.17432 0.83258 0.96823 0.87194 1.43663 1.74038 1.04152 1.07751 1.19277 1.23651 0.83093 1.13491 0.91820 1.25476 0.96869 1.00406 1.00800 1.70270 1.20299 1.32164 1.32288 0.85404 0.78487 0.80571 0.77073 1.20114 1.21908 1.21626 1.20868 0.91906 0.92442 0.94906 1.22792 0.91770 0.78283 0.79650 1.90625 1.53010 1.62339 1.38248 1.46278 1.15568 1.37621 1.38386 1.19193 0.85510 0.94467 0.90118 0.90350 1.22107 1.03425 0.97748 0.97540 1.24576 0.98669 1.07781 1.00813 1.20390 0.97538 1.02335 0.96263 1.20403 1.00313 1.00149 0.96324 1.26018 0.95753 1.07954 1.04634 1.84178 1.14119 1.52829 1.11953 0.75677 0.92263 0.93027 0.94209 0.88865 0.89114 0.75829 0.93451 0.90100 0.91257 0.83637 0.81971 0.79307 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.28 -12.13 19.25 74.32 1.43 -10.70 16 2 C -0.14 -6.78 11.50 31.12 0.36 -6.42 16 3 C 0.28 13.96 5.41 84.57 0.46 14.42 16 4 N -0.58 -29.16 1.98 -716.89 -1.42 -30.57 16 5 C -0.27 -14.87 9.63 84.03 0.81 -14.06 16 6 H 0.06 3.58 7.92 -2.91 -0.02 3.55 16 7 C -0.04 -2.18 4.82 84.86 0.41 -1.78 16 8 N -0.91 -52.82 9.61 21.65 0.21 -52.61 16 9 Si 0.96 46.40 29.61 68.60 2.03 48.43 16 10 H -0.28 -13.18 7.11 99.48 0.71 -12.47 16 11 H -0.29 -14.26 7.11 99.48 0.71 -13.55 16 12 H -0.29 -13.81 7.11 99.48 0.71 -13.10 16 13 C 0.13 5.09 6.16 85.63 0.53 5.62 16 14 C 0.49 18.56 7.86 87.66 0.69 19.25 16 15 O -0.57 -26.67 16.10 -3.03 -0.05 -26.71 16 16 N -0.72 -20.38 5.06 -446.09 -2.26 -22.64 16 17 C 0.21 5.52 3.00 44.24 0.13 5.66 16 18 H 0.08 2.41 7.56 -2.39 -0.02 2.39 16 19 C -0.15 -3.49 9.46 71.98 0.68 -2.81 16 20 C -0.20 -4.23 5.45 24.59 0.13 -4.10 16 21 C -0.13 -2.53 10.04 21.22 0.21 -2.32 16 22 C -0.14 -2.14 10.18 21.22 0.22 -1.93 16 23 C -0.21 -2.94 11.23 66.72 0.75 -2.19 16 24 S 0.11 1.81 22.30 -56.49 -1.26 0.55 16 25 H 0.23 7.81 7.80 -4.42 -0.03 7.78 16 26 H 0.06 3.35 6.59 -2.39 -0.02 3.33 16 27 H 0.05 2.36 8.12 -2.38 -0.02 2.34 16 28 H 0.25 14.20 8.31 -92.71 -0.77 13.43 16 29 H 0.09 3.20 8.07 -2.39 -0.02 3.18 16 30 H 0.09 3.36 8.04 -2.39 -0.02 3.34 16 31 H 0.41 9.30 7.67 -92.71 -0.71 8.59 16 32 H 0.05 1.33 8.14 -2.39 -0.02 1.31 16 33 H 0.08 1.59 8.14 -2.39 -0.02 1.57 16 34 H 0.07 1.43 8.14 -2.39 -0.02 1.41 16 35 H 0.15 2.51 8.06 -2.91 -0.02 2.48 16 36 H 0.16 1.65 8.06 -2.91 -0.02 1.63 16 37 H 0.19 1.60 8.06 -2.92 -0.02 1.58 16 Total: -1.00 -70.52 338.63 4.42 -66.09 By element: Atomic # 1 Polarization: 18.44 SS G_CDS: 0.36 Total: 18.80 kcal Atomic # 6 Polarization: -8.15 SS G_CDS: 6.81 Total: -1.34 kcal Atomic # 7 Polarization: -102.35 SS G_CDS: -3.47 Total: -105.82 kcal Atomic # 8 Polarization: -26.67 SS G_CDS: -0.05 Total: -26.71 kcal Atomic # 14 Polarization: 46.40 SS G_CDS: 2.03 Total: 48.43 kcal Atomic # 16 Polarization: 1.81 SS G_CDS: -1.26 Total: 0.55 kcal Total: -70.52 4.42 -66.09 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000491740054.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 132.172 kcal (2) G-P(sol) polarization free energy of solvation -70.517 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 61.654 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.423 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.095 kcal (6) G-S(sol) free energy of system = (1) + (5) 66.077 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds