Wall clock time and date at job start Tue Mar 31 2020 06:55:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17399 * 1 3 3 C 1.47199 * 179.97438 * 2 1 4 4 N 1.46505 * 109.47421 * 7.73304 * 3 2 1 5 5 C 1.36928 * 119.99755 * 268.76169 * 4 3 2 6 6 H 1.08000 * 120.00481 * 322.08674 * 5 4 3 7 7 C 1.38817 * 120.00229 * 142.08877 * 5 4 3 8 8 N 1.31618 * 120.00402 * 156.95203 * 7 5 4 9 9 Si 1.86804 * 119.99525 * 336.95113 * 7 5 4 10 10 H 1.48498 * 109.47308 * 95.69804 * 9 7 5 11 11 H 1.48495 * 109.47127 * 215.69990 * 9 7 5 12 12 H 1.48507 * 109.47253 * 335.69970 * 9 7 5 13 13 C 1.46499 * 119.99798 * 88.75779 * 4 3 2 14 14 C 1.50704 * 109.46972 * 90.00554 * 13 4 3 15 15 O 1.21286 * 119.99851 * 359.97438 * 14 13 4 16 16 N 1.34773 * 119.99909 * 179.97438 * 14 13 4 17 17 C 1.46510 * 119.99837 * 179.97438 * 16 14 13 18 18 H 1.08996 * 109.46667 * 324.99915 * 17 16 14 19 19 C 1.52997 * 109.46675 * 84.99766 * 17 16 14 20 20 C 1.50695 * 109.47009 * 204.99865 * 17 16 14 21 21 C 1.33390 * 125.20190 * 140.00350 * 20 17 16 22 22 C 1.38422 * 114.91934 * 179.97438 * 21 20 17 23 23 C 1.33385 * 114.92483 * 359.97438 * 22 21 20 24 24 S 1.75882 * 109.59213 * 0.02562 * 23 22 21 25 25 H 4.40646 * 5.51310 * 179.97438 * 4 1 2 26 26 H 1.08997 * 109.47551 * 247.72881 * 3 2 1 27 27 H 1.09010 * 109.47122 * 127.73200 * 3 2 1 28 28 H 0.96996 * 119.99584 * 180.02562 * 8 7 5 29 29 H 1.08999 * 109.47904 * 330.00555 * 13 4 3 30 30 H 1.08999 * 109.47139 * 209.99770 * 13 4 3 31 31 H 0.96996 * 120.00390 * 359.97438 * 16 14 13 32 32 H 1.08996 * 109.47768 * 299.99794 * 19 17 16 33 33 H 1.08996 * 109.47452 * 60.00630 * 19 17 16 34 34 H 1.09003 * 109.46947 * 179.97438 * 19 17 16 35 35 H 1.08002 * 122.54066 * 359.94727 * 21 20 17 36 36 H 1.08001 * 122.53762 * 180.02562 * 22 21 20 37 37 H 1.08001 * 125.20523 * 180.26439 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1740 0.0000 0.0000 3 6 2.6460 0.0007 0.0000 4 7 3.1350 -1.3678 -0.1859 5 6 3.3878 -2.1583 0.9032 6 1 3.8233 -1.7285 1.7932 7 6 3.0843 -3.5123 0.8636 8 7 3.7046 -4.3497 1.6676 9 14 1.7953 -4.1459 -0.3309 10 1 2.4617 -4.6363 -1.5640 11 1 1.0404 -5.2583 0.2996 12 1 0.8592 -3.0466 -0.6780 13 6 3.3535 -1.8904 -1.5369 14 6 4.7675 -1.5957 -1.9669 15 8 5.5186 -1.0066 -1.2186 16 7 5.1974 -1.9866 -3.1829 17 6 6.5719 -1.6996 -3.6012 18 1 6.8819 -0.7371 -3.1943 19 6 7.5027 -2.7968 -3.0811 20 6 6.6400 -1.6544 -5.1059 21 6 7.3533 -0.7803 -5.8174 22 6 7.2615 -0.9327 -7.1902 23 6 6.4741 -1.9310 -7.5935 24 16 5.7920 -2.7470 -6.1926 25 1 -1.0498 -0.0004 0.0001 26 1 3.0092 0.3903 0.9509 27 1 3.0091 0.6298 -0.8128 28 1 3.4927 -5.2958 1.6395 29 1 2.6572 -1.4148 -2.2276 30 1 3.1899 -2.9680 -1.5405 31 1 4.5969 -2.4580 -3.7812 32 1 7.4535 -2.8295 -1.9928 33 1 7.1927 -3.7593 -3.4880 34 1 8.5253 -2.5836 -3.3927 35 1 7.9564 -0.0115 -5.3574 36 1 7.7882 -0.2924 -7.8823 37 1 6.2873 -2.1998 -8.6227 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000491740081.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:55:24 Heat of formation + Delta-G solvation = 85.554010 kcal Electronic energy + Delta-G solvation = -20691.520645 eV Core-core repulsion = 17563.568451 eV Total energy + Delta-G solvation = -3127.952195 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 292.099 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -39.35022 -37.99018 -36.07777 -34.84188 -32.53631 -31.50360 -30.99106 -28.58655 -27.59326 -26.14998 -24.49972 -22.51255 -21.50024 -20.37565 -19.16437 -17.97365 -17.44797 -16.84325 -16.34214 -15.55147 -15.51578 -15.06540 -14.35665 -14.23744 -13.80020 -13.54403 -13.18130 -13.06446 -12.88696 -12.80611 -12.46521 -12.31012 -12.14833 -11.88563 -11.69744 -11.36330 -11.24393 -10.76954 -10.69211 -10.23682 -9.75326 -9.69345 -9.36225 -9.25276 -8.92035 -8.67885 -8.63085 -8.56219 -7.06059 -6.06180 -3.49392 0.81813 1.43706 1.83663 2.56423 3.17917 3.31433 3.40840 3.44817 3.49005 3.58673 3.68821 4.43727 4.53754 4.87794 5.01198 5.13799 5.23942 5.29704 5.35939 5.39054 5.42188 5.62393 5.80925 5.88997 5.92374 6.07746 6.10361 6.11507 6.21323 6.28655 6.37026 6.53189 6.70139 6.82669 7.80664 8.00782 8.30437 8.39433 8.78663 8.96075 9.59812 9.94880 11.08702 Molecular weight = 292.10amu Principal moments of inertia in cm(-1) A = 0.018530 B = 0.004509 C = 0.004305 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1510.717484 B = 6208.939986 C = 6502.899426 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.256 4.256 2 C -0.167 4.167 3 C 0.244 3.756 4 N -0.569 5.569 5 C -0.264 4.264 6 H 0.085 0.915 7 C 0.039 3.961 8 N -0.890 5.890 9 Si 0.861 3.139 10 H -0.285 1.285 11 H -0.296 1.296 12 H -0.260 1.260 13 C 0.118 3.882 14 C 0.492 3.508 15 O -0.514 6.514 16 N -0.743 5.743 17 C 0.213 3.787 18 H 0.103 0.897 19 C -0.159 4.159 20 C -0.174 4.174 21 C -0.135 4.135 22 C -0.132 4.132 23 C -0.218 4.218 24 S 0.103 5.897 25 H 0.204 0.796 26 H 0.084 0.916 27 H 0.067 0.933 28 H 0.264 0.736 29 H 0.072 0.928 30 H 0.083 0.917 31 H 0.391 0.609 32 H 0.075 0.925 33 H 0.056 0.944 34 H 0.063 0.937 35 H 0.142 0.858 36 H 0.139 0.861 37 H 0.163 0.837 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.117 4.906 -18.385 19.468 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.275 4.275 2 C -0.169 4.169 3 C 0.119 3.881 4 N -0.288 5.288 5 C -0.392 4.392 6 H 0.102 0.898 7 C -0.162 4.162 8 N -0.529 5.529 9 Si 0.691 3.309 10 H -0.213 1.213 11 H -0.223 1.223 12 H -0.184 1.184 13 C -0.012 4.012 14 C 0.277 3.723 15 O -0.386 6.386 16 N -0.400 5.400 17 C 0.106 3.894 18 H 0.121 0.879 19 C -0.218 4.218 20 C -0.292 4.292 21 C -0.166 4.166 22 C -0.162 4.162 23 C -0.354 4.354 24 S 0.366 5.634 25 H 0.221 0.779 26 H 0.102 0.898 27 H 0.085 0.915 28 H 0.074 0.926 29 H 0.090 0.910 30 H 0.101 0.899 31 H 0.225 0.775 32 H 0.094 0.906 33 H 0.075 0.925 34 H 0.082 0.918 35 H 0.159 0.841 36 H 0.157 0.843 37 H 0.180 0.820 Dipole moment (debyes) X Y Z Total from point charges 3.727 3.955 -17.483 18.308 hybrid contribution -0.261 0.211 -1.324 1.366 sum 3.467 4.166 -18.807 19.572 Atomic orbital electron populations 1.24683 0.95763 1.03070 1.04018 1.25131 0.96156 0.97952 0.97697 1.18148 0.81473 0.87266 1.01213 1.43674 1.72436 1.11717 1.00930 1.18796 1.35904 0.90084 0.94430 0.89774 1.25475 0.97426 0.96351 0.96935 1.69880 1.39912 1.02931 1.40221 0.87156 0.84466 0.78797 0.80524 1.21330 1.22313 1.18428 1.21331 0.90811 1.00478 0.88597 1.22732 0.92223 0.77640 0.79680 1.90621 1.56805 1.39747 1.51468 1.46570 1.12549 1.62086 1.18760 1.19250 0.84019 1.00731 0.85369 0.87949 1.22204 0.98625 0.97992 1.02965 1.24833 1.04314 1.00873 0.99168 1.20114 1.02381 1.00848 0.93260 1.20155 1.01097 0.99412 0.95571 1.25624 1.05359 1.02237 1.02163 1.84334 1.48437 1.34048 0.96591 0.77935 0.89809 0.91534 0.92561 0.91013 0.89931 0.77513 0.90641 0.92460 0.91789 0.84074 0.84290 0.81965 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.26 -4.74 19.25 29.55 0.57 -4.17 16 2 C -0.17 -3.40 13.68 -37.12 -0.51 -3.91 16 3 C 0.24 5.05 6.14 -6.83 -0.04 5.01 16 4 N -0.57 -13.66 1.51 -177.94 -0.27 -13.93 16 5 C -0.26 -7.43 9.90 -15.06 -0.15 -7.58 16 6 H 0.08 2.58 8.06 -52.49 -0.42 2.16 16 7 C 0.04 1.13 5.29 -17.43 -0.09 1.04 16 8 N -0.89 -27.05 13.97 55.49 0.78 -26.27 16 9 Si 0.86 21.42 25.10 -169.99 -4.27 17.15 16 10 H -0.29 -6.67 6.68 56.52 0.38 -6.29 16 11 H -0.30 -7.50 7.11 56.52 0.40 -7.10 16 12 H -0.26 -6.39 7.11 56.52 0.40 -5.99 16 13 C 0.12 2.51 5.00 -5.19 -0.03 2.49 16 14 C 0.49 10.00 7.86 -10.98 -0.09 9.91 16 15 O -0.51 -12.14 16.09 5.55 0.09 -12.05 16 16 N -0.74 -11.97 5.06 -54.93 -0.28 -12.25 16 17 C 0.21 3.04 3.00 -69.08 -0.21 2.83 16 18 H 0.10 1.56 7.56 -51.93 -0.39 1.16 16 19 C -0.16 -2.24 9.47 37.16 0.35 -1.89 16 20 C -0.17 -2.08 5.45 -36.01 -0.20 -2.28 16 21 C -0.14 -1.43 10.04 -41.21 -0.41 -1.84 16 22 C -0.13 -1.21 10.18 -41.21 -0.42 -1.63 16 23 C -0.22 -1.99 11.23 29.04 0.33 -1.66 16 24 S 0.10 1.10 22.31 -107.50 -2.40 -1.30 16 25 H 0.20 2.94 7.80 -54.10 -0.42 2.51 16 26 H 0.08 1.71 8.03 -51.93 -0.42 1.30 16 27 H 0.07 1.22 8.08 -51.92 -0.42 0.80 16 28 H 0.26 7.58 8.31 -40.82 -0.34 7.24 16 29 H 0.07 1.31 8.07 -51.93 -0.42 0.89 16 30 H 0.08 1.88 3.38 -51.93 -0.18 1.70 16 31 H 0.39 5.54 7.68 -40.82 -0.31 5.23 16 32 H 0.07 1.28 8.14 -51.93 -0.42 0.85 16 33 H 0.06 0.78 8.14 -51.93 -0.42 0.35 16 34 H 0.06 0.76 8.14 -51.93 -0.42 0.34 16 35 H 0.14 1.29 8.06 -52.49 -0.42 0.87 16 36 H 0.14 0.96 8.06 -52.49 -0.42 0.53 16 37 H 0.16 1.09 8.06 -52.49 -0.42 0.66 16 LS Contribution 336.99 15.07 5.08 5.08 Total: -1.00 -33.17 336.99 -6.84 -40.02 By element: Atomic # 1 Polarization: 11.92 SS G_CDS: -4.68 Total: 7.24 kcal Atomic # 6 Polarization: -2.79 SS G_CDS: -0.89 Total: -3.68 kcal Atomic # 7 Polarization: -52.68 SS G_CDS: 0.23 Total: -52.46 kcal Atomic # 8 Polarization: -12.14 SS G_CDS: 0.09 Total: -12.05 kcal Atomic # 14 Polarization: 21.42 SS G_CDS: -4.27 Total: 17.15 kcal Atomic # 16 Polarization: 1.10 SS G_CDS: -2.40 Total: -1.30 kcal Total LS contribution 5.08 Total: 5.08 kcal Total: -33.17 -6.84 -40.02 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000491740081.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 125.570 kcal (2) G-P(sol) polarization free energy of solvation -33.174 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 92.396 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.842 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.016 kcal (6) G-S(sol) free energy of system = (1) + (5) 85.554 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds