Wall clock time and date at job start Tue Mar 31 2020 06:55:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17399 * 1 3 3 C 1.47199 * 179.97438 * 2 1 4 4 N 1.46505 * 109.47421 * 7.73304 * 3 2 1 5 5 C 1.36928 * 119.99755 * 268.76169 * 4 3 2 6 6 H 1.08000 * 120.00481 * 322.08674 * 5 4 3 7 7 C 1.38817 * 120.00229 * 142.08877 * 5 4 3 8 8 N 1.31618 * 120.00402 * 156.95203 * 7 5 4 9 9 Si 1.86804 * 119.99525 * 336.95113 * 7 5 4 10 10 H 1.48498 * 109.47308 * 95.69804 * 9 7 5 11 11 H 1.48495 * 109.47127 * 215.69990 * 9 7 5 12 12 H 1.48507 * 109.47253 * 335.69970 * 9 7 5 13 13 C 1.46499 * 119.99798 * 88.75779 * 4 3 2 14 14 C 1.50704 * 109.46972 * 90.00554 * 13 4 3 15 15 O 1.21286 * 119.99851 * 359.97438 * 14 13 4 16 16 N 1.34773 * 119.99909 * 179.97438 * 14 13 4 17 17 C 1.46510 * 119.99837 * 179.97438 * 16 14 13 18 18 H 1.08996 * 109.46667 * 324.99915 * 17 16 14 19 19 C 1.52997 * 109.46675 * 84.99766 * 17 16 14 20 20 C 1.50695 * 109.47009 * 204.99865 * 17 16 14 21 21 C 1.33390 * 125.20190 * 140.00350 * 20 17 16 22 22 C 1.38422 * 114.91934 * 179.97438 * 21 20 17 23 23 C 1.33385 * 114.92483 * 359.97438 * 22 21 20 24 24 S 1.75882 * 109.59213 * 0.02562 * 23 22 21 25 25 H 4.40646 * 5.51310 * 179.97438 * 4 1 2 26 26 H 1.08997 * 109.47551 * 247.72881 * 3 2 1 27 27 H 1.09010 * 109.47122 * 127.73200 * 3 2 1 28 28 H 0.96996 * 119.99584 * 180.02562 * 8 7 5 29 29 H 1.08999 * 109.47904 * 330.00555 * 13 4 3 30 30 H 1.08999 * 109.47139 * 209.99770 * 13 4 3 31 31 H 0.96996 * 120.00390 * 359.97438 * 16 14 13 32 32 H 1.08996 * 109.47768 * 299.99794 * 19 17 16 33 33 H 1.08996 * 109.47452 * 60.00630 * 19 17 16 34 34 H 1.09003 * 109.46947 * 179.97438 * 19 17 16 35 35 H 1.08002 * 122.54066 * 359.94727 * 21 20 17 36 36 H 1.08001 * 122.53762 * 180.02562 * 22 21 20 37 37 H 1.08001 * 125.20523 * 180.26439 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1740 0.0000 0.0000 3 6 2.6460 0.0007 0.0000 4 7 3.1350 -1.3678 -0.1859 5 6 3.3878 -2.1583 0.9032 6 1 3.8233 -1.7285 1.7932 7 6 3.0843 -3.5123 0.8636 8 7 3.7046 -4.3497 1.6676 9 14 1.7953 -4.1459 -0.3309 10 1 2.4617 -4.6363 -1.5640 11 1 1.0404 -5.2583 0.2996 12 1 0.8592 -3.0466 -0.6780 13 6 3.3535 -1.8904 -1.5369 14 6 4.7675 -1.5957 -1.9669 15 8 5.5186 -1.0066 -1.2186 16 7 5.1974 -1.9866 -3.1829 17 6 6.5719 -1.6996 -3.6012 18 1 6.8819 -0.7371 -3.1943 19 6 7.5027 -2.7968 -3.0811 20 6 6.6400 -1.6544 -5.1059 21 6 7.3533 -0.7803 -5.8174 22 6 7.2615 -0.9327 -7.1902 23 6 6.4741 -1.9310 -7.5935 24 16 5.7920 -2.7470 -6.1926 25 1 -1.0498 -0.0004 0.0001 26 1 3.0092 0.3903 0.9509 27 1 3.0091 0.6298 -0.8128 28 1 3.4927 -5.2958 1.6395 29 1 2.6572 -1.4148 -2.2276 30 1 3.1899 -2.9680 -1.5405 31 1 4.5969 -2.4580 -3.7812 32 1 7.4535 -2.8295 -1.9928 33 1 7.1927 -3.7593 -3.4880 34 1 8.5253 -2.5836 -3.3927 35 1 7.9564 -0.0115 -5.3574 36 1 7.7882 -0.2924 -7.8823 37 1 6.2873 -2.1998 -8.6227 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000491740081.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:55:24 Heat of formation + Delta-G solvation = 64.156816 kcal Electronic energy + Delta-G solvation = -20692.448497 eV Core-core repulsion = 17563.568451 eV Total energy + Delta-G solvation = -3128.880047 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 292.099 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -40.85095 -38.95502 -37.72562 -36.23694 -34.36664 -33.27251 -32.40166 -29.59179 -29.09202 -28.06823 -25.46033 -24.02267 -22.93873 -21.75612 -20.20474 -19.32319 -19.04760 -18.30969 -17.87172 -17.27633 -16.57620 -16.23968 -16.00958 -15.82521 -15.24456 -15.00926 -14.81689 -14.57580 -14.22037 -14.04402 -13.59867 -13.52926 -13.44618 -13.12413 -13.09079 -12.91927 -12.65245 -12.40568 -12.13007 -11.75600 -11.62098 -11.32492 -10.97102 -10.89503 -10.60648 -10.19600 -9.63506 -9.42171 -9.00516 -8.24751 -5.67359 0.02428 0.63005 1.06786 1.22135 1.38612 1.51296 1.76399 1.77964 1.92906 2.07752 2.29630 2.36567 3.01695 3.43482 3.53561 3.75956 4.03815 4.14029 4.23918 4.26711 4.33202 4.38086 4.57370 4.61476 4.65970 4.71135 4.85148 4.90112 5.12892 5.18188 5.26231 5.35235 5.46021 5.59646 5.83668 6.12554 6.49261 6.81204 6.90659 7.34039 7.50660 7.88361 8.94763 Molecular weight = 292.10amu Principal moments of inertia in cm(-1) A = 0.018530 B = 0.004509 C = 0.004305 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1510.717484 B = 6208.939986 C = 6502.899426 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.223 4.223 2 C -0.216 4.216 3 C 0.246 3.754 4 N -0.582 5.582 5 C -0.260 4.260 6 H 0.036 0.964 7 C -0.016 4.016 8 N -0.942 5.942 9 Si 0.932 3.068 10 H -0.260 1.260 11 H -0.303 1.303 12 H -0.249 1.249 13 C 0.113 3.887 14 C 0.494 3.506 15 O -0.557 6.557 16 N -0.727 5.727 17 C 0.216 3.784 18 H 0.089 0.911 19 C -0.154 4.154 20 C -0.200 4.200 21 C -0.127 4.127 22 C -0.139 4.139 23 C -0.205 4.205 24 S 0.090 5.910 25 H 0.243 0.757 26 H 0.071 0.929 27 H 0.088 0.912 28 H 0.265 0.735 29 H 0.109 0.891 30 H 0.072 0.928 31 H 0.403 0.597 32 H 0.038 0.962 33 H 0.062 0.938 34 H 0.086 0.914 35 H 0.151 0.849 36 H 0.166 0.834 37 H 0.190 0.810 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.789 5.330 -22.291 23.089 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.241 4.241 2 C -0.219 4.219 3 C 0.121 3.879 4 N -0.302 5.302 5 C -0.390 4.390 6 H 0.054 0.946 7 C -0.213 4.213 8 N -0.585 5.585 9 Si 0.758 3.242 10 H -0.187 1.187 11 H -0.231 1.231 12 H -0.172 1.172 13 C -0.016 4.016 14 C 0.279 3.721 15 O -0.433 6.433 16 N -0.383 5.383 17 C 0.110 3.890 18 H 0.107 0.893 19 C -0.212 4.212 20 C -0.318 4.318 21 C -0.158 4.158 22 C -0.169 4.169 23 C -0.340 4.340 24 S 0.353 5.647 25 H 0.260 0.740 26 H 0.089 0.911 27 H 0.106 0.894 28 H 0.074 0.926 29 H 0.127 0.873 30 H 0.090 0.910 31 H 0.239 0.761 32 H 0.058 0.942 33 H 0.081 0.919 34 H 0.105 0.895 35 H 0.169 0.831 36 H 0.184 0.816 37 H 0.207 0.793 Dipole moment (debyes) X Y Z Total from point charges 2.393 4.394 -21.462 22.038 hybrid contribution 0.220 0.197 -0.172 0.341 sum 2.613 4.591 -21.634 22.269 Atomic orbital electron populations 1.25587 0.96642 1.00344 1.01553 1.25031 0.96488 1.00328 1.00017 1.18063 0.82504 0.85785 1.01509 1.43674 1.73385 1.12278 1.00819 1.18569 1.35014 0.90778 0.94598 0.94630 1.26112 0.99221 0.96394 0.99602 1.70024 1.41860 1.03283 1.43344 0.86023 0.81233 0.77989 0.78933 1.18661 1.23102 1.17218 1.21423 0.92200 1.00009 0.87972 1.22453 0.91731 0.77403 0.80496 1.90609 1.57668 1.42014 1.53034 1.46341 1.13716 1.60739 1.17472 1.19192 0.82479 0.99932 0.87401 0.89325 1.22140 1.00180 0.98439 1.00483 1.24502 1.06755 1.02873 0.97660 1.20406 1.01228 1.00103 0.94091 1.20422 1.01383 0.99921 0.95195 1.26008 1.04062 1.01239 1.02689 1.84354 1.48727 1.34224 0.97398 0.74013 0.91110 0.89403 0.92586 0.87348 0.91041 0.76088 0.94250 0.91928 0.89539 0.83127 0.81621 0.79264 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.22 -7.50 19.25 74.32 1.43 -6.07 16 2 C -0.22 -8.47 13.68 31.12 0.43 -8.05 16 3 C 0.25 10.23 6.14 84.57 0.52 10.75 16 4 N -0.58 -28.24 1.51 -716.89 -1.09 -29.33 16 5 C -0.26 -15.27 9.90 84.04 0.83 -14.44 16 6 H 0.04 2.37 8.06 -2.91 -0.02 2.35 16 7 C -0.02 -0.96 5.29 84.86 0.45 -0.51 16 8 N -0.94 -59.64 13.97 21.65 0.30 -59.33 16 9 Si 0.93 44.38 25.10 68.60 1.72 46.10 16 10 H -0.26 -11.22 6.68 99.48 0.66 -10.55 16 11 H -0.30 -14.69 7.11 99.48 0.71 -13.98 16 12 H -0.25 -11.28 7.11 99.48 0.71 -10.58 16 13 C 0.11 4.71 5.00 85.63 0.43 5.13 16 14 C 0.49 20.12 7.86 87.66 0.69 20.81 16 15 O -0.56 -27.22 16.09 -3.05 -0.05 -27.26 16 16 N -0.73 -22.92 5.06 -446.09 -2.26 -25.18 16 17 C 0.22 6.07 3.00 44.24 0.13 6.21 16 18 H 0.09 2.73 7.56 -2.39 -0.02 2.71 16 19 C -0.15 -4.36 9.47 71.98 0.68 -3.67 16 20 C -0.20 -4.44 5.45 24.59 0.13 -4.30 16 21 C -0.13 -2.36 10.04 21.22 0.21 -2.14 16 22 C -0.14 -2.05 10.18 21.21 0.22 -1.83 16 23 C -0.20 -2.96 11.23 66.72 0.75 -2.21 16 24 S 0.09 1.70 22.31 -56.49 -1.26 0.44 16 25 H 0.24 5.79 7.80 -4.43 -0.03 5.76 16 26 H 0.07 3.04 8.03 -2.39 -0.02 3.02 16 27 H 0.09 3.19 8.08 -2.38 -0.02 3.18 16 28 H 0.27 15.75 8.31 -92.71 -0.77 14.98 16 29 H 0.11 3.66 8.07 -2.39 -0.02 3.64 16 30 H 0.07 3.14 3.38 -2.39 -0.01 3.13 16 31 H 0.40 10.78 7.68 -92.71 -0.71 10.07 16 32 H 0.04 1.38 8.14 -2.39 -0.02 1.36 16 33 H 0.06 1.67 8.14 -2.39 -0.02 1.65 16 34 H 0.09 2.01 8.14 -2.39 -0.02 1.99 16 35 H 0.15 2.43 8.06 -2.91 -0.02 2.40 16 36 H 0.17 1.55 8.06 -2.91 -0.02 1.52 16 37 H 0.19 1.66 8.06 -2.91 -0.02 1.64 16 Total: -1.00 -75.19 336.99 4.60 -70.59 By element: Atomic # 1 Polarization: 23.98 SS G_CDS: 0.33 Total: 24.30 kcal Atomic # 6 Polarization: -7.23 SS G_CDS: 6.90 Total: -0.33 kcal Atomic # 7 Polarization: -110.81 SS G_CDS: -3.04 Total: -113.85 kcal Atomic # 8 Polarization: -27.22 SS G_CDS: -0.05 Total: -27.26 kcal Atomic # 14 Polarization: 44.38 SS G_CDS: 1.72 Total: 46.10 kcal Atomic # 16 Polarization: 1.70 SS G_CDS: -1.26 Total: 0.44 kcal Total: -75.19 4.60 -70.59 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000491740081.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 134.751 kcal (2) G-P(sol) polarization free energy of solvation -75.191 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 59.560 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.596 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.594 kcal (6) G-S(sol) free energy of system = (1) + (5) 64.157 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds