Wall clock time and date at job start Tue Mar 31 2020 06:24:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31378 * 1 3 3 Si 1.86799 * 119.99941 * 2 1 4 4 H 1.48496 * 109.47296 * 270.00789 * 3 2 1 5 5 H 1.48499 * 109.47149 * 30.01145 * 3 2 1 6 6 H 1.48508 * 109.46798 * 150.00562 * 3 2 1 7 7 C 1.39037 * 119.99867 * 180.02562 * 2 1 3 8 8 H 1.08002 * 120.00210 * 164.88421 * 7 2 1 9 9 N 1.36808 * 120.00272 * 344.87919 * 7 2 1 10 10 C 1.34777 * 120.00100 * 149.48175 * 9 7 2 11 11 O 1.21818 * 119.99422 * 184.94597 * 10 9 7 12 12 C 1.41524 * 119.99988 * 4.94129 * 10 9 7 13 13 C 1.35369 * 119.99574 * 184.35909 * 12 10 9 14 14 C 1.46667 * 119.99944 * 179.97438 * 13 12 10 15 15 C 1.36580 * 123.30560 * 179.73315 * 14 13 12 16 16 S 1.70941 * 108.70331 * 179.87218 * 15 14 13 17 17 C 1.70727 * 91.22289 * 0.32934 * 16 15 14 18 18 N 1.28610 * 110.81961 * 359.80322 * 17 16 15 19 19 C 1.46504 * 119.99567 * 329.47876 * 9 7 2 20 20 C 1.55240 * 110.57901 * 234.87976 * 19 9 7 21 21 C 1.54888 * 102.58531 * 203.33908 * 20 19 9 22 22 C 1.54267 * 104.31315 * 37.93358 * 21 20 19 23 23 C 1.53877 * 106.59891 * 336.32159 * 22 21 20 24 24 H 0.96993 * 119.99979 * 359.97438 * 1 2 3 25 25 H 1.07992 * 119.99991 * 4.36092 * 12 10 9 26 26 H 1.08005 * 120.00258 * 0.02562 * 13 12 10 27 27 H 1.07997 * 125.65041 * 359.95943 * 15 14 13 28 28 H 1.08005 * 124.59010 * 179.78322 * 17 16 15 29 29 H 1.08998 * 110.43327 * 357.46672 * 19 9 7 30 30 H 1.08998 * 110.89770 * 85.05030 * 20 19 9 31 31 H 1.09001 * 110.76900 * 321.57188 * 20 19 9 32 32 H 1.09000 * 110.49065 * 279.18945 * 21 20 19 33 33 H 1.09006 * 110.48295 * 156.67851 * 21 20 19 34 34 H 1.09008 * 110.03271 * 95.60773 * 22 21 20 35 35 H 1.08994 * 110.03223 * 216.98618 * 22 21 20 36 36 H 1.09005 * 110.02897 * 119.28202 * 23 22 21 37 37 H 1.08994 * 110.03055 * 240.66970 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3138 0.0000 0.0000 3 14 2.2478 1.6177 0.0000 4 1 2.4951 2.0465 -1.4000 5 1 1.4453 2.6526 0.7003 6 1 3.5454 1.4401 0.7000 7 6 2.0089 -1.2041 -0.0005 8 1 3.0609 -1.2202 -0.2444 9 7 1.3604 -2.3685 0.3080 10 6 1.7628 -3.5306 -0.2436 11 8 1.1311 -4.5521 -0.0404 12 6 2.9191 -3.5638 -1.0590 13 6 3.2735 -4.7109 -1.6843 14 6 4.4715 -4.7454 -2.5298 15 6 4.8937 -5.8658 -3.1868 16 16 6.3147 -5.4873 -4.0584 17 6 6.2736 -3.8755 -3.4969 18 7 5.2602 -3.6849 -2.7284 19 6 0.2286 -2.3523 1.2381 20 6 0.4675 -3.3472 2.4056 21 6 -0.9718 -3.6472 2.8931 22 6 -1.8093 -3.7015 1.5987 23 6 -1.0461 -2.8781 0.5464 24 1 -0.4850 0.8400 0.0004 25 1 3.5187 -2.6741 -1.1823 26 1 2.6736 -5.6006 -1.5613 27 1 4.4093 -6.8307 -3.1612 28 1 7.0005 -3.1186 -3.7523 29 1 0.0664 -1.3453 1.6225 30 1 1.0548 -2.8832 3.1979 31 1 0.9509 -4.2557 2.0464 32 1 -1.3280 -2.8494 3.5448 33 1 -1.0071 -4.6059 3.4108 34 1 -1.9116 -4.7335 1.2631 35 1 -2.7935 -3.2664 1.7724 36 1 -0.7779 -3.5106 -0.2999 37 1 -1.6599 -2.0432 0.2086 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000491881232.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:24:03 Heat of formation + Delta-G solvation = 13.473345 kcal Electronic energy + Delta-G solvation = -21035.603013 eV Core-core repulsion = 17904.525166 eV Total energy + Delta-G solvation = -3131.077847 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 292.099 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -41.13971 -40.53090 -38.01672 -36.20846 -34.14614 -33.35089 -31.00115 -29.42557 -28.82612 -26.96726 -26.05933 -24.31923 -21.87487 -21.13308 -20.66077 -20.43967 -19.14853 -18.36120 -17.55014 -16.71967 -16.55759 -16.31272 -15.85819 -15.59582 -15.28574 -15.00697 -14.79650 -14.22871 -14.17974 -14.08050 -13.60980 -13.17567 -12.91050 -12.81753 -12.49801 -12.44218 -12.15360 -12.04169 -11.93912 -11.83313 -11.52412 -11.30042 -11.08178 -10.78840 -10.64303 -10.54209 -10.19104 -9.49397 -9.07837 -8.31969 -5.96402 -0.49663 0.47330 0.53107 0.81565 1.42657 1.44862 1.56669 2.02046 2.29495 2.69624 3.07933 3.18432 3.33879 3.94609 4.00057 4.06195 4.21578 4.25182 4.41423 4.43945 4.62062 4.72222 4.83567 4.84649 4.89489 4.94431 5.08361 5.16098 5.18234 5.27395 5.36279 5.50363 5.53973 5.55237 5.63200 5.71965 5.98553 6.50161 6.77467 7.11194 7.62264 8.04912 8.70984 Molecular weight = 292.10amu Principal moments of inertia in cm(-1) A = 0.014682 B = 0.004973 C = 0.003879 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1906.649402 B = 5628.592715 C = 7215.769607 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.882 5.882 2 C 0.002 3.998 3 Si 0.985 3.015 4 H -0.275 1.275 5 H -0.275 1.275 6 H -0.264 1.264 7 C -0.358 4.358 8 H 0.094 0.906 9 N -0.431 5.431 10 C 0.472 3.528 11 O -0.626 6.626 12 C -0.159 4.159 13 C -0.038 4.038 14 C 0.052 3.948 15 C -0.281 4.281 16 S 0.268 5.732 17 C -0.012 4.012 18 N -0.494 5.494 19 C 0.159 3.841 20 C -0.142 4.142 21 C -0.105 4.105 22 C -0.110 4.110 23 C -0.108 4.108 24 H 0.273 0.727 25 H 0.122 0.878 26 H 0.138 0.862 27 H 0.200 0.800 28 H 0.229 0.771 29 H 0.088 0.912 30 H 0.056 0.944 31 H 0.061 0.939 32 H 0.074 0.926 33 H 0.077 0.923 34 H 0.055 0.945 35 H 0.073 0.927 36 H 0.035 0.965 37 H 0.048 0.952 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.542 -7.181 -4.726 12.843 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.518 5.518 2 C -0.202 4.202 3 Si 0.809 3.191 4 H -0.200 1.200 5 H -0.200 1.200 6 H -0.188 1.188 7 C -0.486 4.486 8 H 0.112 0.888 9 N -0.146 5.146 10 C 0.266 3.734 11 O -0.518 6.518 12 C -0.182 4.182 13 C -0.062 4.062 14 C -0.080 4.080 15 C -0.422 4.422 16 S 0.523 5.477 17 C -0.310 4.310 18 N -0.208 5.208 19 C 0.055 3.945 20 C -0.180 4.180 21 C -0.143 4.143 22 C -0.148 4.148 23 C -0.147 4.147 24 H 0.082 0.918 25 H 0.140 0.860 26 H 0.155 0.845 27 H 0.217 0.783 28 H 0.245 0.755 29 H 0.106 0.894 30 H 0.075 0.925 31 H 0.080 0.920 32 H 0.093 0.907 33 H 0.096 0.904 34 H 0.074 0.926 35 H 0.091 0.909 36 H 0.054 0.946 37 H 0.067 0.933 Dipole moment (debyes) X Y Z Total from point charges 9.664 -7.452 -5.024 13.197 hybrid contribution -0.677 1.199 0.450 1.449 sum 8.987 -6.253 -4.574 11.865 Atomic orbital electron populations 1.70054 1.07218 1.28577 1.45982 1.26171 0.96118 1.02597 0.95313 0.85058 0.78463 0.77107 0.78512 1.20032 1.20008 1.18791 1.19848 0.94800 0.84767 1.49177 0.88813 1.43757 1.28341 1.06123 1.36354 1.17377 0.88020 0.84359 0.83659 1.90585 1.60024 1.34677 1.66471 1.22182 0.97480 0.99518 0.99005 1.21667 0.92852 0.97887 0.93748 1.19629 0.97551 0.88850 1.01930 1.27228 1.04763 1.04639 1.05543 1.82268 1.18193 1.05362 1.41836 1.28992 1.00145 1.02623 0.99280 1.66948 1.05404 1.31332 1.17154 1.21795 0.85491 0.98797 0.88445 1.22951 0.98290 0.99720 0.97037 1.22173 0.93437 1.01864 0.96836 1.21991 0.98502 0.99307 0.94978 1.22082 0.96423 0.97874 0.98282 0.91757 0.85982 0.84462 0.78286 0.75519 0.89448 0.92490 0.92029 0.90745 0.90446 0.92589 0.90857 0.94632 0.93322 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.88 -47.18 10.61 21.68 0.23 -46.95 16 2 C 0.00 0.08 4.94 84.95 0.42 0.50 16 3 Si 0.99 40.93 29.58 68.60 2.03 42.96 16 4 H -0.27 -11.28 7.11 99.48 0.71 -10.57 16 5 H -0.28 -11.05 7.11 99.48 0.71 -10.34 16 6 H -0.26 -10.66 7.11 99.48 0.71 -9.95 16 7 C -0.36 -19.32 8.84 84.11 0.74 -18.57 16 8 H 0.09 4.96 6.20 -2.91 -0.02 4.94 16 9 N -0.43 -23.23 2.62 -616.94 -1.62 -24.85 16 10 C 0.47 24.91 6.52 85.05 0.55 25.47 16 11 O -0.63 -34.06 12.49 -4.72 -0.06 -34.12 16 12 C -0.16 -7.50 8.73 22.42 0.20 -7.31 16 13 C -0.04 -1.52 9.52 23.81 0.23 -1.29 16 14 C 0.05 1.72 6.66 40.68 0.27 1.99 16 15 C -0.28 -6.64 10.99 67.43 0.74 -5.90 16 16 S 0.27 4.33 22.96 -56.49 -1.30 3.04 16 17 C -0.01 -0.27 12.15 130.71 1.59 1.32 16 18 N -0.49 -16.29 9.96 -192.58 -1.92 -18.21 16 19 C 0.16 7.96 2.24 46.19 0.10 8.07 16 20 C -0.14 -6.20 6.25 32.01 0.20 -6.00 16 21 C -0.11 -3.75 6.82 31.67 0.22 -3.54 16 22 C -0.11 -4.22 6.80 31.32 0.21 -4.00 16 23 C -0.11 -5.21 5.88 31.32 0.18 -5.03 16 24 H 0.27 13.70 8.31 -92.71 -0.77 12.93 16 25 H 0.12 5.93 5.69 -2.91 -0.02 5.91 16 26 H 0.14 5.34 7.46 -2.91 -0.02 5.32 16 27 H 0.20 3.69 8.06 -2.91 -0.02 3.66 16 28 H 0.23 3.16 8.06 -2.91 -0.02 3.14 16 29 H 0.09 4.67 5.95 -2.39 -0.01 4.66 16 30 H 0.06 2.35 8.14 -2.39 -0.02 2.33 16 31 H 0.06 2.96 5.93 -2.39 -0.01 2.95 16 32 H 0.07 2.38 8.14 -2.39 -0.02 2.36 16 33 H 0.08 2.40 8.14 -2.38 -0.02 2.38 16 34 H 0.06 2.11 8.14 -2.38 -0.02 2.09 16 35 H 0.07 2.44 8.14 -2.39 -0.02 2.42 16 36 H 0.03 1.91 6.18 -2.38 -0.01 1.89 16 37 H 0.05 2.43 7.76 -2.39 -0.02 2.41 16 Total: -1.00 -68.02 316.18 4.12 -63.90 By element: Atomic # 1 Polarization: 27.44 SS G_CDS: 1.09 Total: 28.53 kcal Atomic # 6 Polarization: -19.96 SS G_CDS: 5.66 Total: -14.31 kcal Atomic # 7 Polarization: -86.70 SS G_CDS: -3.30 Total: -90.01 kcal Atomic # 8 Polarization: -34.06 SS G_CDS: -0.06 Total: -34.12 kcal Atomic # 14 Polarization: 40.93 SS G_CDS: 2.03 Total: 42.96 kcal Atomic # 16 Polarization: 4.33 SS G_CDS: -1.30 Total: 3.04 kcal Total: -68.02 4.12 -63.90 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000491881232.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 77.375 kcal (2) G-P(sol) polarization free energy of solvation -68.017 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 9.358 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.116 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.901 kcal (6) G-S(sol) free energy of system = (1) + (5) 13.473 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds