Wall clock time and date at job start Tue Mar 31 2020 06:24:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31374 * 1 3 3 Si 1.86805 * 119.99602 * 2 1 4 4 H 1.48497 * 109.47399 * 276.19271 * 3 2 1 5 5 H 1.48504 * 109.47080 * 36.19517 * 3 2 1 6 6 H 1.48501 * 109.47316 * 156.19025 * 3 2 1 7 7 C 1.39043 * 120.00691 * 179.97438 * 2 1 3 8 8 H 1.08001 * 119.99289 * 359.92356 * 7 2 1 9 9 N 1.36803 * 120.00273 * 179.97438 * 7 2 1 10 10 C 1.34775 * 119.99733 * 305.10879 * 9 7 2 11 11 O 1.21811 * 120.00291 * 5.16013 * 10 9 7 12 12 C 1.41528 * 119.99732 * 185.15002 * 10 9 7 13 13 C 1.35370 * 119.99872 * 196.49286 * 12 10 9 14 14 C 1.46675 * 119.99946 * 30.66798 * 13 12 10 15 15 C 1.36579 * 123.30495 * 187.03503 * 14 13 12 16 16 S 1.70937 * 108.70748 * 179.97438 * 15 14 13 17 17 C 1.70730 * 91.22144 * 0.02562 * 16 15 14 18 18 N 1.28615 * 110.81775 * 359.74577 * 17 16 15 19 19 C 1.46498 * 120.00260 * 125.11097 * 9 7 2 20 20 C 1.55238 * 110.57758 * 49.49803 * 19 9 7 21 21 C 1.54895 * 102.58852 * 203.33982 * 20 19 9 22 22 C 1.54273 * 104.31243 * 37.93286 * 21 20 19 23 23 C 1.53875 * 106.59532 * 336.32564 * 22 21 20 24 24 H 0.96993 * 120.00716 * 0.02562 * 1 2 3 25 25 H 1.07997 * 119.99716 * 16.50040 * 12 10 9 26 26 H 1.08001 * 120.00239 * 210.66528 * 13 12 10 27 27 H 1.08004 * 125.64490 * 359.97438 * 15 14 13 28 28 H 1.07989 * 124.59269 * 179.97438 * 17 16 15 29 29 H 1.08991 * 110.43448 * 172.08536 * 19 9 7 30 30 H 1.08995 * 110.89853 * 85.05586 * 20 19 9 31 31 H 1.09000 * 110.77118 * 321.56973 * 20 19 9 32 32 H 1.08995 * 110.48623 * 279.19235 * 21 20 19 33 33 H 1.08992 * 110.48783 * 156.67958 * 21 20 19 34 34 H 1.09005 * 110.03055 * 95.60756 * 22 21 20 35 35 H 1.08999 * 110.03537 * 216.99233 * 22 21 20 36 36 H 1.09002 * 110.03115 * 119.28330 * 23 22 21 37 37 H 1.08997 * 110.03141 * 240.66272 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3137 0.0000 0.0000 3 14 2.2477 1.6178 0.0000 4 1 2.3644 2.1221 -1.3919 5 1 1.5166 2.6114 0.8268 6 1 3.6045 1.4062 0.5652 7 6 2.0091 -1.2041 0.0005 8 1 1.4691 -2.1394 0.0022 9 7 3.3771 -1.2040 0.0000 10 6 4.0505 -0.5333 -0.9556 11 8 3.4448 0.1493 -1.7625 12 6 5.4615 -0.6218 -1.0213 13 6 6.1638 0.2851 -1.7402 14 6 5.6619 1.6560 -1.8821 15 6 6.2380 2.5846 -2.7013 16 16 5.3572 4.0445 -2.5800 17 6 4.2809 3.3443 -1.4548 18 7 4.5930 2.1177 -1.2261 19 6 4.1101 -1.9329 1.0380 20 6 3.5657 -3.3801 1.1763 21 6 3.9776 -3.7593 2.6205 22 6 3.7749 -2.4607 3.4283 23 6 3.8591 -1.2995 2.4221 24 1 -0.4851 0.8399 -0.0004 25 1 5.9779 -1.4129 -0.4981 26 1 7.0937 -0.0007 -2.2093 27 1 7.1064 2.4232 -3.3229 28 1 3.4484 3.8601 -0.9999 29 1 5.1764 -1.9466 0.8125 30 1 4.0387 -4.0442 0.4529 31 1 2.4813 -3.3973 1.0668 32 1 5.0225 -4.0679 2.6505 33 1 3.3356 -4.5518 3.0047 34 1 2.7962 -2.4686 3.9083 35 1 4.5583 -2.3621 4.1797 36 1 2.9214 -0.7439 2.4139 37 1 4.6833 -0.6366 2.6852 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000491881233.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:24:05 Heat of formation + Delta-G solvation = 52.531846 kcal Electronic energy + Delta-G solvation = -22115.174216 eV Core-core repulsion = 18985.790073 eV Total energy + Delta-G solvation = -3129.384143 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 292.099 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -41.41982 -40.37350 -38.49872 -35.48280 -34.38267 -33.79818 -31.03269 -29.50044 -28.57579 -27.44294 -26.00094 -24.06911 -21.82951 -21.49872 -20.92903 -20.41687 -19.17285 -18.17181 -18.07380 -17.35102 -16.79709 -16.09211 -15.71167 -15.64108 -15.33647 -15.21889 -14.83933 -14.27707 -14.18164 -14.00070 -13.88867 -13.41193 -13.18193 -12.71671 -12.61245 -12.31480 -12.04701 -11.94211 -11.84396 -11.77777 -11.35990 -11.17487 -10.89364 -10.85504 -10.50836 -10.27220 -9.87772 -9.28719 -8.95895 -8.26682 -6.25097 -0.54181 0.28071 0.48277 0.80831 1.42075 1.66443 1.82706 2.13163 2.49123 2.90101 2.98143 3.09143 3.36435 3.84796 3.89872 3.96803 4.10089 4.19455 4.32189 4.35491 4.49668 4.66035 4.66945 4.73493 4.77685 4.92804 5.04932 5.06939 5.17599 5.27271 5.28918 5.40400 5.42362 5.58420 5.60499 5.76136 6.02333 6.83032 6.93308 7.06073 7.43755 8.04606 8.71873 Molecular weight = 292.10amu Principal moments of inertia in cm(-1) A = 0.019821 B = 0.006821 C = 0.005758 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1412.271976 B = 4103.684574 C = 4862.006460 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.932 5.932 2 C 0.012 3.988 3 Si 1.046 2.954 4 H -0.289 1.289 5 H -0.364 1.364 6 H -0.260 1.260 7 C -0.312 4.312 8 H 0.056 0.944 9 N -0.475 5.475 10 C 0.494 3.506 11 O -0.579 6.579 12 C -0.211 4.211 13 C -0.005 4.005 14 C 0.039 3.961 15 C -0.262 4.262 16 S 0.257 5.743 17 C -0.056 4.056 18 N -0.448 5.448 19 C 0.122 3.878 20 C -0.130 4.130 21 C -0.108 4.108 22 C -0.113 4.113 23 C -0.134 4.134 24 H 0.265 0.735 25 H 0.168 0.832 26 H 0.196 0.804 27 H 0.222 0.778 28 H 0.174 0.826 29 H 0.112 0.888 30 H 0.075 0.925 31 H 0.043 0.957 32 H 0.093 0.907 33 H 0.071 0.929 34 H 0.048 0.952 35 H 0.088 0.912 36 H 0.032 0.968 37 H 0.066 0.934 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 19.763 2.194 -0.151 19.885 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.572 5.572 2 C -0.188 4.188 3 Si 0.886 3.114 4 H -0.218 1.218 5 H -0.301 1.301 6 H -0.185 1.185 7 C -0.441 4.441 8 H 0.074 0.926 9 N -0.196 5.196 10 C 0.290 3.710 11 O -0.466 6.466 12 C -0.233 4.233 13 C -0.027 4.027 14 C -0.093 4.093 15 C -0.403 4.403 16 S 0.512 5.488 17 C -0.354 4.354 18 N -0.162 5.162 19 C 0.018 3.982 20 C -0.168 4.168 21 C -0.146 4.146 22 C -0.151 4.151 23 C -0.172 4.172 24 H 0.073 0.927 25 H 0.186 0.814 26 H 0.213 0.787 27 H 0.239 0.761 28 H 0.191 0.809 29 H 0.130 0.870 30 H 0.094 0.906 31 H 0.062 0.938 32 H 0.112 0.888 33 H 0.089 0.911 34 H 0.067 0.933 35 H 0.106 0.894 36 H 0.051 0.949 37 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges 19.001 3.249 -0.588 19.286 hybrid contribution -0.975 -0.126 0.124 0.991 sum 18.026 3.123 -0.465 18.300 Atomic orbital electron populations 1.69830 1.08346 1.28159 1.50816 1.26559 0.95788 1.03910 0.92568 0.84391 0.75441 0.75934 0.75619 1.21781 1.30072 1.18543 1.18424 0.80937 0.92730 1.51973 0.92636 1.43838 1.04890 1.47663 1.23196 1.18071 0.89632 0.81961 0.81377 1.90438 1.70909 1.42069 1.43233 1.22482 0.92819 1.04513 1.03511 1.22284 0.99973 0.87298 0.93160 1.20238 0.92944 0.97827 0.98273 1.27383 1.08906 0.97788 1.06174 1.82008 1.17996 1.11996 1.36820 1.28285 1.06862 0.94880 1.05373 1.67465 1.12971 1.11010 1.24798 1.22430 0.96339 0.92050 0.87336 1.22799 1.00557 0.95112 0.98363 1.22261 1.02557 0.96800 0.92973 1.22040 1.01718 0.93922 0.97448 1.22425 1.00674 0.98774 0.95361 0.92674 0.81445 0.78741 0.76121 0.80864 0.87016 0.90617 0.93842 0.88797 0.91071 0.93270 0.89368 0.94930 0.91533 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -63.28 13.95 21.68 0.30 -62.98 16 2 C 0.01 0.78 5.28 84.95 0.45 1.23 16 3 Si 1.05 60.63 19.46 68.60 1.34 61.96 16 4 H -0.29 -17.14 5.06 99.48 0.50 -16.64 16 5 H -0.36 -21.38 7.11 99.48 0.71 -20.67 16 6 H -0.26 -14.46 5.64 99.48 0.56 -13.90 16 7 C -0.31 -19.07 8.02 84.11 0.67 -18.40 16 8 H 0.06 3.67 6.86 -2.91 -0.02 3.65 16 9 N -0.47 -23.76 2.11 -616.96 -1.30 -25.06 16 10 C 0.49 24.17 4.71 85.05 0.40 24.57 16 11 O -0.58 -33.39 10.12 -4.71 -0.05 -33.44 16 12 C -0.21 -7.39 8.93 22.42 0.20 -7.19 16 13 C 0.00 -0.15 9.85 23.81 0.23 0.09 16 14 C 0.04 1.33 5.95 40.68 0.24 1.58 16 15 C -0.26 -6.38 10.99 67.43 0.74 -5.64 16 16 S 0.26 6.22 22.96 -56.49 -1.30 4.92 16 17 C -0.06 -2.11 9.73 130.71 1.27 -0.83 16 18 N -0.45 -19.41 3.67 -192.58 -0.71 -20.11 16 19 C 0.12 4.61 3.14 46.19 0.14 4.75 16 20 C -0.13 -4.46 6.39 32.01 0.20 -4.26 16 21 C -0.11 -2.77 6.82 31.67 0.22 -2.55 16 22 C -0.11 -3.25 6.80 31.32 0.21 -3.04 16 23 C -0.13 -4.99 6.44 31.32 0.20 -4.79 16 24 H 0.26 17.15 8.31 -92.71 -0.77 16.38 16 25 H 0.17 4.37 6.00 -2.91 -0.02 4.36 16 26 H 0.20 3.23 8.06 -2.91 -0.02 3.21 16 27 H 0.22 3.15 8.06 -2.91 -0.02 3.12 16 28 H 0.17 6.47 6.64 -2.92 -0.02 6.45 16 29 H 0.11 3.37 5.38 -2.39 -0.01 3.35 16 30 H 0.08 2.28 8.14 -2.39 -0.02 2.26 16 31 H 0.04 1.86 6.34 -2.39 -0.02 1.85 16 32 H 0.09 1.81 8.14 -2.39 -0.02 1.79 16 33 H 0.07 1.69 8.14 -2.39 -0.02 1.67 16 34 H 0.05 1.52 8.14 -2.38 -0.02 1.50 16 35 H 0.09 1.96 8.14 -2.39 -0.02 1.94 16 36 H 0.03 1.53 7.34 -2.39 -0.02 1.51 16 37 H 0.07 2.23 8.14 -2.39 -0.02 2.21 16 Total: -1.00 -89.37 294.94 4.22 -85.15 By element: Atomic # 1 Polarization: 3.31 SS G_CDS: 0.74 Total: 4.04 kcal Atomic # 6 Polarization: -19.67 SS G_CDS: 5.19 Total: -14.48 kcal Atomic # 7 Polarization: -106.45 SS G_CDS: -1.70 Total: -108.15 kcal Atomic # 8 Polarization: -33.39 SS G_CDS: -0.05 Total: -33.44 kcal Atomic # 14 Polarization: 60.63 SS G_CDS: 1.34 Total: 61.96 kcal Atomic # 16 Polarization: 6.22 SS G_CDS: -1.30 Total: 4.92 kcal Total: -89.37 4.22 -85.15 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000491881233.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 137.685 kcal (2) G-P(sol) polarization free energy of solvation -89.369 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 48.316 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.216 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -85.153 kcal (6) G-S(sol) free energy of system = (1) + (5) 52.532 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds