Wall clock time and date at job start Tue Mar 31 2020 06:37:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.30998 * 1 3 3 C 1.50708 * 119.99808 * 2 1 4 4 N 1.46503 * 109.46762 * 125.00193 * 3 2 1 5 5 C 1.46498 * 119.99737 * 89.99965 * 4 3 2 6 6 C 1.50706 * 109.46945 * 89.99892 * 5 4 3 7 7 H 1.08000 * 120.00096 * 359.97438 * 6 5 4 8 8 C 1.37878 * 119.99775 * 179.97438 * 6 5 4 9 9 N 1.31514 * 120.00186 * 359.97438 * 8 6 5 10 10 Si 1.86803 * 119.99728 * 180.02562 * 8 6 5 11 11 H 1.48504 * 109.47103 * 89.99726 * 10 8 6 12 12 H 1.48497 * 109.46828 * 210.00065 * 10 8 6 13 13 H 1.48494 * 109.47221 * 329.99769 * 10 8 6 14 14 C 1.34774 * 119.99899 * 270.27427 * 4 3 2 15 15 O 1.21781 * 119.99856 * 179.72948 * 14 4 3 16 16 C 1.41543 * 120.00148 * 359.72583 * 14 4 3 17 17 C 1.35564 * 120.00147 * 185.83028 * 16 14 4 18 18 C 1.41723 * 119.99788 * 7.62542 * 17 16 14 19 19 S 1.76216 * 126.18940 * 47.65691 * 18 17 16 20 20 C 1.70915 * 90.38737 * 179.97438 * 19 18 17 21 21 N 1.29351 * 110.65497 * 359.97438 * 20 19 18 22 22 C 1.30958 * 117.49412 * 359.70884 * 21 20 19 23 23 C 1.50701 * 123.08245 * 180.35172 * 22 21 20 24 24 H 1.07997 * 120.00181 * 180.02562 * 1 2 3 25 25 H 1.08001 * 120.00055 * 359.97438 * 1 2 3 26 26 H 1.07992 * 120.00164 * 180.02562 * 2 1 3 27 27 H 1.08999 * 109.46816 * 5.00314 * 3 2 1 28 28 H 1.08996 * 109.46872 * 244.99835 * 3 2 1 29 29 H 1.08996 * 109.47006 * 209.99340 * 5 4 3 30 30 H 1.08999 * 109.47591 * 329.99999 * 5 4 3 31 31 H 0.96994 * 119.99759 * 180.02562 * 9 8 6 32 32 H 1.08001 * 120.00230 * 5.83147 * 16 14 4 33 33 H 1.07998 * 119.99728 * 187.63146 * 17 16 14 34 34 H 1.08003 * 124.67120 * 180.02562 * 20 19 18 35 35 H 1.09000 * 109.46832 * 270.18940 * 23 22 21 36 36 H 1.08993 * 109.47051 * 30.18668 * 23 22 21 37 37 H 1.09002 * 109.47240 * 150.18974 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0635 1.3052 0.0000 4 7 2.9938 1.3319 1.1314 5 6 4.3589 0.8257 0.9693 6 6 5.2615 1.9481 0.5258 7 1 4.8585 2.9392 0.3790 8 6 6.6019 1.7095 0.3076 9 7 7.0927 0.5027 0.4869 10 14 7.7208 3.1010 -0.2415 11 1 8.2901 3.7783 0.9512 12 1 8.8226 2.5517 -1.0719 13 1 6.9392 4.0789 -1.0401 14 6 2.5919 1.8171 2.3229 15 8 3.3637 1.8348 3.2647 16 6 1.2730 2.3062 2.4795 17 6 0.9042 2.9019 3.6401 18 6 1.8759 3.1808 4.6333 19 16 3.4386 3.9522 4.3725 20 6 3.7916 3.8273 6.0401 21 7 2.8139 3.2639 6.6725 22 6 1.7671 2.9059 5.9718 23 6 0.5558 2.2477 6.5805 24 1 -0.5400 -0.9353 0.0004 25 1 -0.5400 0.9353 0.0004 26 1 1.8500 -0.9352 -0.0004 27 1 1.3585 2.1317 0.0896 28 1 2.6213 1.4027 -0.9313 29 1 4.7141 0.4279 1.9199 30 1 4.3666 0.0352 0.2189 31 1 8.0357 0.3350 0.3337 32 1 0.5603 2.2049 1.6743 33 1 -0.1300 3.1637 3.8077 34 1 4.7048 4.1721 6.5023 35 1 0.6873 1.1657 6.5715 36 1 0.4338 2.5904 7.6079 37 1 -0.3299 2.5109 6.0021 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000492880103.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:37:06 Heat of formation + Delta-G solvation = 43.787378 kcal Electronic energy + Delta-G solvation = -21032.211302 eV Core-core repulsion = 17902.447970 eV Total energy + Delta-G solvation = -3129.763332 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 292.099 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -41.14494 -40.35939 -37.34685 -35.46924 -34.86598 -33.61622 -32.09610 -29.87170 -28.27324 -26.88353 -25.95308 -25.19754 -22.87967 -21.10895 -20.37834 -19.57890 -18.63002 -18.44607 -18.16889 -17.08155 -16.53095 -16.23071 -15.93168 -15.68808 -15.17360 -14.56508 -14.47155 -14.33137 -14.27157 -14.16106 -13.57625 -13.45649 -13.30250 -13.15292 -12.98730 -12.72333 -12.45197 -12.28971 -12.17112 -12.14646 -11.68337 -11.27596 -10.64688 -10.59585 -10.47360 -10.21698 -9.66338 -9.09861 -8.99743 -8.20167 -6.35435 -0.70186 0.54969 0.87749 1.11375 1.35810 1.37734 1.38896 1.48736 1.92139 2.34565 2.62096 2.65745 3.08824 3.45961 3.95110 4.01162 4.12638 4.20361 4.26714 4.32463 4.57625 4.61647 4.80181 4.83567 4.83850 4.98141 4.99460 5.11178 5.17619 5.23939 5.37235 5.52834 5.59351 5.75555 5.86082 5.88786 6.08173 6.72758 6.85363 6.88936 7.30538 7.53508 8.86014 Molecular weight = 292.10amu Principal moments of inertia in cm(-1) A = 0.012701 B = 0.006500 C = 0.004664 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2204.019669 B = 4306.702902 C = 6002.386870 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.157 4.157 2 C -0.192 4.192 3 C 0.133 3.867 4 N -0.594 5.594 5 C 0.266 3.734 6 C -0.532 4.532 7 H 0.055 0.945 8 C 0.008 3.992 9 N -0.931 5.931 10 Si 0.962 3.038 11 H -0.279 1.279 12 H -0.278 1.278 13 H -0.260 1.260 14 C 0.513 3.487 15 O -0.576 6.576 16 C -0.214 4.214 17 C 0.021 3.979 18 C -0.232 4.232 19 S 0.225 5.775 20 C -0.030 4.030 21 N -0.505 5.505 22 C 0.064 3.936 23 C -0.071 4.071 24 H 0.111 0.889 25 H 0.124 0.876 26 H 0.086 0.914 27 H 0.108 0.892 28 H 0.075 0.925 29 H -0.005 1.005 30 H 0.014 0.986 31 H 0.265 0.735 32 H 0.168 0.832 33 H 0.191 0.809 34 H 0.211 0.789 35 H 0.070 0.930 36 H 0.079 0.921 37 H 0.103 0.897 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.733 6.081 3.307 19.036 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C -0.211 4.211 3 C 0.011 3.989 4 N -0.323 5.323 5 C 0.144 3.856 6 C -0.571 4.571 7 H 0.073 0.927 8 C -0.191 4.191 9 N -0.571 5.571 10 Si 0.787 3.213 11 H -0.205 1.205 12 H -0.203 1.203 13 H -0.184 1.184 14 C 0.306 3.694 15 O -0.460 6.460 16 C -0.238 4.238 17 C -0.001 4.001 18 C -0.354 4.354 19 S 0.486 5.514 20 C -0.321 4.321 21 N -0.221 5.221 22 C -0.074 4.074 23 C -0.130 4.130 24 H 0.129 0.871 25 H 0.142 0.858 26 H 0.104 0.896 27 H 0.126 0.874 28 H 0.094 0.906 29 H 0.013 0.987 30 H 0.032 0.968 31 H 0.074 0.926 32 H 0.186 0.814 33 H 0.208 0.792 34 H 0.228 0.772 35 H 0.089 0.911 36 H 0.098 0.902 37 H 0.121 0.879 Dipole moment (debyes) X Y Z Total from point charges -16.407 6.379 3.472 17.942 hybrid contribution 1.019 -0.470 0.011 1.122 sum -15.388 5.909 3.484 16.847 Atomic orbital electron populations 1.24049 0.94273 1.03649 0.97443 1.23227 0.97148 0.97989 1.02775 1.20827 0.92067 0.96573 0.89399 1.48207 1.13164 1.60133 1.10840 1.18637 0.78404 0.93751 0.94803 1.21655 0.94049 0.96061 1.45339 0.92658 1.25829 0.99545 0.98191 0.95488 1.70063 1.14508 1.22340 1.50194 0.85489 0.78372 0.79144 0.78316 1.20475 1.20308 1.18386 1.17986 0.89300 0.79613 0.82467 1.90886 1.58254 1.56820 1.40029 1.22486 0.96006 1.04339 1.00929 1.20985 0.98718 0.91359 0.89017 1.23848 1.00412 1.13023 0.98129 1.84100 1.12428 1.47028 1.07850 1.28731 1.03020 1.04601 0.95784 1.65849 1.01534 1.14984 1.39706 1.21424 0.96642 1.00997 0.88339 1.20411 0.91689 0.99337 1.01523 0.87074 0.85807 0.89559 0.87446 0.90640 0.98666 0.96805 0.92576 0.81425 0.79191 0.77240 0.91136 0.90211 0.87871 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.87 14.00 67.78 0.95 -1.92 16 2 C -0.19 -5.14 9.84 25.65 0.25 -4.89 16 3 C 0.13 4.14 5.49 85.64 0.47 4.61 16 4 N -0.59 -25.11 2.44 -841.18 -2.05 -27.16 16 5 C 0.27 14.41 5.17 85.64 0.44 14.85 16 6 C -0.53 -30.39 9.39 25.60 0.24 -30.15 16 7 H 0.06 3.10 7.81 -2.91 -0.02 3.08 16 8 C 0.01 0.47 5.46 84.65 0.46 0.93 16 9 N -0.93 -56.80 13.29 21.45 0.28 -56.52 16 10 Si 0.96 44.70 29.54 68.60 2.03 46.73 16 11 H -0.28 -12.86 7.11 99.48 0.71 -12.16 16 12 H -0.28 -12.47 7.11 99.48 0.71 -11.76 16 13 H -0.26 -11.38 7.11 99.48 0.71 -10.68 16 14 C 0.51 20.87 7.10 85.06 0.60 21.48 16 15 O -0.58 -28.07 11.01 -4.61 -0.05 -28.12 16 16 C -0.21 -5.93 9.05 22.47 0.20 -5.73 16 17 C 0.02 0.50 9.20 22.51 0.21 0.71 16 18 C -0.23 -7.32 4.62 22.86 0.11 -7.22 16 19 S 0.23 8.05 19.57 -56.49 -1.11 6.95 16 20 C -0.03 -0.98 12.20 130.61 1.59 0.61 16 21 N -0.50 -17.54 10.49 -189.44 -1.99 -19.53 16 22 C 0.06 2.00 6.85 42.42 0.29 2.29 16 23 C -0.07 -1.53 10.09 71.24 0.72 -0.81 16 24 H 0.11 1.73 8.06 -2.91 -0.02 1.71 16 25 H 0.12 1.58 7.74 -2.91 -0.02 1.56 16 26 H 0.09 2.68 8.06 -2.91 -0.02 2.66 16 27 H 0.11 2.50 5.82 -2.39 -0.01 2.49 16 28 H 0.08 2.53 8.07 -2.39 -0.02 2.51 16 29 H 0.00 -0.30 7.41 -2.39 -0.02 -0.32 16 30 H 0.01 0.78 8.07 -2.39 -0.02 0.76 16 31 H 0.27 15.23 8.31 -92.71 -0.77 14.46 16 32 H 0.17 3.25 5.76 -2.91 -0.02 3.23 16 33 H 0.19 2.50 7.82 -2.91 -0.02 2.48 16 34 H 0.21 5.64 8.06 -2.91 -0.02 5.62 16 35 H 0.07 1.57 8.14 -2.39 -0.02 1.55 16 36 H 0.08 1.58 8.14 -2.39 -0.02 1.56 16 37 H 0.10 1.50 7.47 -2.39 -0.02 1.48 16 Total: -1.00 -77.39 330.83 4.72 -72.67 By element: Atomic # 1 Polarization: 9.16 SS G_CDS: 1.07 Total: 10.23 kcal Atomic # 6 Polarization: -11.79 SS G_CDS: 6.54 Total: -5.25 kcal Atomic # 7 Polarization: -99.46 SS G_CDS: -3.75 Total: -103.21 kcal Atomic # 8 Polarization: -28.07 SS G_CDS: -0.05 Total: -28.12 kcal Atomic # 14 Polarization: 44.70 SS G_CDS: 2.03 Total: 46.73 kcal Atomic # 16 Polarization: 8.05 SS G_CDS: -1.11 Total: 6.95 kcal Total: -77.39 4.72 -72.67 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000492880103.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 116.458 kcal (2) G-P(sol) polarization free energy of solvation -77.393 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 39.064 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.723 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.670 kcal (6) G-S(sol) free energy of system = (1) + (5) 43.787 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds