Wall clock time and date at job start Tue Mar 31 2020 06:27:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31373 * 1 3 3 Si 1.86798 * 119.99805 * 2 1 4 4 H 1.48495 * 109.47302 * 275.60004 * 3 2 1 5 5 H 1.48506 * 109.47230 * 35.60334 * 3 2 1 6 6 H 1.48504 * 109.47007 * 155.59558 * 3 2 1 7 7 C 1.39057 * 119.99804 * 180.02562 * 2 1 3 8 8 H 1.07998 * 120.00200 * 342.17970 * 7 2 1 9 9 N 1.36769 * 119.99646 * 162.18180 * 7 2 1 10 10 C 1.34771 * 120.00443 * 298.92880 * 9 7 2 11 11 O 1.21837 * 120.00290 * 184.57190 * 10 9 7 12 12 C 1.41347 * 119.99731 * 4.56823 * 10 9 7 13 13 C 1.35722 * 120.00050 * 185.42197 * 12 10 9 14 14 C 1.41653 * 119.99593 * 11.66564 * 13 12 10 15 15 C 1.37144 * 126.19511 * 224.16450 * 14 13 12 16 16 N 1.30938 * 113.83477 * 179.79090 * 15 14 13 17 17 C 1.29365 * 117.49690 * 0.52535 * 16 15 14 18 18 S 1.70912 * 110.66463 * 359.70666 * 17 16 15 19 19 C 1.46507 * 119.99831 * 118.92384 * 9 7 2 20 20 C 1.54970 * 110.91991 * 121.34701 * 19 9 7 21 21 C 1.54269 * 104.15527 * 156.29950 * 20 19 9 22 22 C 1.53876 * 106.63932 * 336.44302 * 21 20 19 23 23 C 1.54256 * 106.60023 * 359.97438 * 22 21 20 24 24 H 0.96996 * 119.99702 * 359.97438 * 1 2 3 25 25 H 1.07996 * 120.00097 * 5.42518 * 12 10 9 26 26 H 1.07995 * 120.00088 * 191.67093 * 13 12 10 27 27 H 1.08006 * 123.08037 * 359.97438 * 15 14 13 28 28 H 1.08004 * 124.66911 * 179.72499 * 17 16 15 29 29 H 1.09000 * 110.67238 * 358.04800 * 19 9 7 30 30 H 1.08998 * 110.47748 * 37.64945 * 20 19 9 31 31 H 1.08994 * 110.53001 * 274.97586 * 20 19 9 32 32 H 1.09003 * 110.02622 * 217.13765 * 21 20 19 33 33 H 1.08998 * 110.03375 * 95.75877 * 21 20 19 34 34 H 1.09005 * 110.02441 * 119.26619 * 22 21 20 35 35 H 1.09003 * 110.02918 * 240.64309 * 22 21 20 36 36 H 1.09001 * 110.48646 * 142.29108 * 23 22 21 37 37 H 1.09002 * 110.48505 * 264.79583 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3137 0.0000 0.0000 3 14 2.2477 1.6178 0.0000 4 1 2.3768 2.1148 -1.3933 5 1 1.5093 2.6156 0.8151 6 1 3.5994 1.4090 0.5785 7 6 2.0090 -1.2043 -0.0005 8 1 1.5078 -2.1173 0.2853 9 7 3.3275 -1.2325 -0.3630 10 6 3.6947 -0.8444 -1.6003 11 8 4.8568 -0.9479 -1.9514 12 6 2.7317 -0.3175 -2.4906 13 6 3.0771 -0.0295 -3.7711 14 6 4.3167 -0.4793 -4.2885 15 6 5.1934 0.2560 -5.0446 16 7 6.2721 -0.4002 -5.3915 17 6 6.3750 -1.6293 -5.0013 18 16 5.0077 -2.0873 -4.0838 19 6 4.3407 -1.6845 0.5938 20 6 5.1250 -2.8994 0.0366 21 6 6.4660 -2.8643 0.7984 22 6 6.6702 -1.4120 1.2643 23 6 5.4464 -0.6142 0.7691 24 1 -0.4849 0.8400 0.0004 25 1 1.7210 -0.1439 -2.1519 26 1 2.4070 0.5427 -4.3956 27 1 5.0121 1.2830 -5.3254 28 1 7.2101 -2.2768 -5.2244 29 1 3.8830 -1.9279 1.5527 30 1 5.2917 -2.7868 -1.0346 31 1 4.5919 -3.8269 0.2453 32 1 7.2793 -3.1619 0.1365 33 1 6.4235 -3.5305 1.6601 34 1 6.7259 -1.3734 2.3523 35 1 7.5831 -1.0052 0.8292 36 1 5.1471 0.1254 1.5118 37 1 5.6662 -0.1302 -0.1826 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000492944063.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:27:26 Heat of formation + Delta-G solvation = 46.714500 kcal Electronic energy + Delta-G solvation = -22101.147047 eV Core-core repulsion = 18971.510645 eV Total energy + Delta-G solvation = -3129.636402 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 292.099 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -39.82162 -38.84251 -36.83086 -34.62482 -33.44703 -31.91733 -29.00319 -28.13014 -27.30709 -25.32238 -24.38597 -22.50170 -20.26048 -19.86755 -19.75932 -18.72361 -17.91481 -16.64987 -15.82815 -15.67195 -15.23745 -14.80203 -14.13441 -13.96840 -13.61949 -13.41039 -13.40093 -13.10458 -12.83536 -12.56121 -12.47442 -11.98666 -11.34519 -11.20211 -11.10038 -11.03001 -10.82328 -10.67507 -10.48747 -10.27525 -10.03227 -9.90059 -9.61578 -9.15330 -9.00920 -8.65178 -8.23750 -7.56281 -7.28189 -6.59729 -4.43062 0.73262 1.93953 2.28546 2.51065 3.06863 3.17878 3.26762 3.38757 4.04303 4.24164 4.45246 4.73801 4.84119 5.22756 5.24445 5.38201 5.60336 5.69196 5.72625 5.87743 6.01583 6.02084 6.11125 6.14704 6.22745 6.32261 6.39699 6.41933 6.55529 6.63730 6.80387 6.83204 6.92416 6.97289 7.03467 7.60734 7.77103 8.24127 8.34296 8.87109 9.15030 9.60980 10.47065 Molecular weight = 292.10amu Principal moments of inertia in cm(-1) A = 0.013737 B = 0.008824 C = 0.006325 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2037.784252 B = 3172.270764 C = 4425.910975 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.856 5.856 2 C 0.080 3.920 3 Si 0.852 3.148 4 H -0.264 1.264 5 H -0.283 1.283 6 H -0.252 1.252 7 C -0.355 4.355 8 H 0.099 0.901 9 N -0.445 5.445 10 C 0.503 3.497 11 O -0.572 6.572 12 C -0.154 4.154 13 C -0.057 4.057 14 C -0.176 4.176 15 C 0.029 3.971 16 N -0.481 5.481 17 C -0.046 4.046 18 S 0.247 5.753 19 C 0.139 3.861 20 C -0.138 4.138 21 C -0.115 4.115 22 C -0.116 4.116 23 C -0.140 4.140 24 H 0.277 0.723 25 H 0.151 0.849 26 H 0.134 0.866 27 H 0.166 0.834 28 H 0.184 0.816 29 H 0.086 0.914 30 H 0.091 0.909 31 H 0.054 0.946 32 H 0.056 0.944 33 H 0.054 0.946 34 H 0.054 0.946 35 H 0.055 0.945 36 H 0.054 0.946 37 H 0.084 0.916 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.146 -2.952 -3.627 8.540 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.490 5.490 2 C -0.129 4.129 3 Si 0.676 3.324 4 H -0.189 1.189 5 H -0.209 1.209 6 H -0.176 1.176 7 C -0.483 4.483 8 H 0.116 0.884 9 N -0.164 5.164 10 C 0.297 3.703 11 O -0.459 6.459 12 C -0.178 4.178 13 C -0.080 4.080 14 C -0.298 4.298 15 C -0.127 4.127 16 N -0.196 5.196 17 C -0.338 4.338 18 S 0.505 5.495 19 C 0.035 3.965 20 C -0.176 4.176 21 C -0.153 4.153 22 C -0.154 4.154 23 C -0.178 4.178 24 H 0.088 0.912 25 H 0.168 0.832 26 H 0.151 0.849 27 H 0.183 0.817 28 H 0.201 0.799 29 H 0.104 0.896 30 H 0.109 0.891 31 H 0.073 0.927 32 H 0.075 0.925 33 H 0.073 0.927 34 H 0.073 0.927 35 H 0.074 0.926 36 H 0.073 0.927 37 H 0.103 0.897 Dipole moment (debyes) X Y Z Total from point charges 7.740 -3.726 -3.573 9.304 hybrid contribution -0.029 2.045 0.188 2.054 sum 7.711 -1.681 -3.385 8.588 Atomic orbital electron populations 1.69718 1.06313 1.28481 1.44490 1.25741 0.95132 0.98455 0.93564 0.87130 0.81800 0.83714 0.79760 1.18881 1.20857 1.17589 1.18965 0.83210 0.95707 1.50398 0.88389 1.43570 1.06731 1.57247 1.08806 1.17381 0.88510 0.81430 0.83015 1.90760 1.20263 1.58960 1.75953 1.22859 1.02195 0.99098 0.93695 1.20404 0.93409 0.98805 0.95358 1.23748 1.01727 0.98335 1.06013 1.22208 0.89597 1.00746 1.00172 1.65879 1.23373 1.06920 1.23425 1.28241 1.05187 0.96889 1.03456 1.83563 1.13724 1.10711 1.41541 1.22211 0.88438 0.93032 0.92859 1.22768 0.94797 0.97521 1.02530 1.21990 0.97844 0.96363 0.99145 1.21994 0.98261 0.95595 0.99532 1.22768 0.94765 0.98152 1.02108 0.91199 0.83190 0.84851 0.81686 0.79945 0.89568 0.89070 0.92705 0.92509 0.92700 0.92701 0.92570 0.92733 0.89701 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.86 -22.28 13.95 55.50 0.77 -21.50 16 2 C 0.08 2.00 3.74 -17.44 -0.07 1.93 16 3 Si 0.85 19.57 25.50 -169.99 -4.33 15.24 16 4 H -0.26 -5.96 6.81 56.52 0.38 -5.57 16 5 H -0.28 -6.48 7.11 56.52 0.40 -6.08 16 6 H -0.25 -5.89 6.01 56.52 0.34 -5.55 16 7 C -0.35 -8.77 8.93 -15.05 -0.13 -8.91 16 8 H 0.10 2.60 8.06 -52.49 -0.42 2.18 16 9 N -0.45 -10.03 1.81 -108.86 -0.20 -10.23 16 10 C 0.50 11.13 5.09 -15.08 -0.08 11.05 16 11 O -0.57 -12.46 7.72 5.07 0.04 -12.43 16 12 C -0.15 -3.27 7.05 -39.30 -0.28 -3.55 16 13 C -0.06 -1.04 9.93 -39.18 -0.39 -1.43 16 14 C -0.18 -3.19 4.63 -38.68 -0.18 -3.37 16 15 C 0.03 0.51 11.38 -18.33 -0.21 0.30 16 16 N -0.48 -8.53 10.50 -15.04 -0.16 -8.69 16 17 C -0.05 -0.72 12.20 51.72 0.63 -0.09 16 18 S 0.25 4.14 19.62 -107.50 -2.11 2.03 16 19 C 0.14 2.77 3.33 -65.89 -0.22 2.55 16 20 C -0.14 -2.44 6.22 -25.03 -0.16 -2.60 16 21 C -0.12 -1.74 6.80 -25.61 -0.17 -1.91 16 22 C -0.12 -1.82 6.80 -25.62 -0.17 -1.99 16 23 C -0.14 -2.68 5.66 -25.08 -0.14 -2.83 16 24 H 0.28 6.77 8.31 -40.82 -0.34 6.43 16 25 H 0.15 3.39 5.12 -52.49 -0.27 3.12 16 26 H 0.13 2.03 8.06 -52.49 -0.42 1.61 16 27 H 0.17 2.50 8.06 -52.48 -0.42 2.08 16 28 H 0.18 2.24 8.06 -52.48 -0.42 1.81 16 29 H 0.09 1.71 7.95 -51.93 -0.41 1.30 16 30 H 0.09 1.76 5.92 -51.93 -0.31 1.45 16 31 H 0.05 0.92 8.14 -51.93 -0.42 0.50 16 32 H 0.06 0.81 8.14 -51.93 -0.42 0.38 16 33 H 0.05 0.73 8.14 -51.93 -0.42 0.31 16 34 H 0.05 0.77 8.14 -51.93 -0.42 0.35 16 35 H 0.06 0.85 8.14 -51.93 -0.42 0.43 16 36 H 0.05 1.06 7.59 -51.93 -0.39 0.66 16 37 H 0.08 1.84 5.90 -51.93 -0.31 1.53 16 LS Contribution 304.51 15.07 4.59 4.59 Total: -1.00 -27.22 304.51 -7.67 -34.89 By element: Atomic # 1 Polarization: 11.64 SS G_CDS: -4.71 Total: 6.93 kcal Atomic # 6 Polarization: -9.27 SS G_CDS: -1.56 Total: -10.83 kcal Atomic # 7 Polarization: -40.84 SS G_CDS: 0.42 Total: -40.42 kcal Atomic # 8 Polarization: -12.46 SS G_CDS: 0.04 Total: -12.43 kcal Atomic # 14 Polarization: 19.57 SS G_CDS: -4.33 Total: 15.24 kcal Atomic # 16 Polarization: 4.14 SS G_CDS: -2.11 Total: 2.03 kcal Total LS contribution 4.59 Total: 4.59 kcal Total: -27.22 -7.67 -34.89 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000492944063.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 81.602 kcal (2) G-P(sol) polarization free energy of solvation -27.219 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 54.383 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.669 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.888 kcal (6) G-S(sol) free energy of system = (1) + (5) 46.714 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds