Wall clock time and date at job start Tue Mar 31 2020 06:27:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31373 * 1 3 3 Si 1.86798 * 119.99805 * 2 1 4 4 H 1.48495 * 109.47302 * 275.60004 * 3 2 1 5 5 H 1.48506 * 109.47230 * 35.60334 * 3 2 1 6 6 H 1.48504 * 109.47007 * 155.59558 * 3 2 1 7 7 C 1.39057 * 119.99804 * 180.02562 * 2 1 3 8 8 H 1.07998 * 120.00200 * 342.17970 * 7 2 1 9 9 N 1.36769 * 119.99646 * 162.18180 * 7 2 1 10 10 C 1.34771 * 120.00443 * 298.92880 * 9 7 2 11 11 O 1.21837 * 120.00290 * 184.57190 * 10 9 7 12 12 C 1.41347 * 119.99731 * 4.56823 * 10 9 7 13 13 C 1.35722 * 120.00050 * 185.42197 * 12 10 9 14 14 C 1.41653 * 119.99593 * 11.66564 * 13 12 10 15 15 C 1.37144 * 126.19511 * 224.16450 * 14 13 12 16 16 N 1.30938 * 113.83477 * 179.79090 * 15 14 13 17 17 C 1.29365 * 117.49690 * 0.52535 * 16 15 14 18 18 S 1.70912 * 110.66463 * 359.70666 * 17 16 15 19 19 C 1.46507 * 119.99831 * 118.92384 * 9 7 2 20 20 C 1.54970 * 110.91991 * 121.34701 * 19 9 7 21 21 C 1.54269 * 104.15527 * 156.29950 * 20 19 9 22 22 C 1.53876 * 106.63932 * 336.44302 * 21 20 19 23 23 C 1.54256 * 106.60023 * 359.97438 * 22 21 20 24 24 H 0.96996 * 119.99702 * 359.97438 * 1 2 3 25 25 H 1.07996 * 120.00097 * 5.42518 * 12 10 9 26 26 H 1.07995 * 120.00088 * 191.67093 * 13 12 10 27 27 H 1.08006 * 123.08037 * 359.97438 * 15 14 13 28 28 H 1.08004 * 124.66911 * 179.72499 * 17 16 15 29 29 H 1.09000 * 110.67238 * 358.04800 * 19 9 7 30 30 H 1.08998 * 110.47748 * 37.64945 * 20 19 9 31 31 H 1.08994 * 110.53001 * 274.97586 * 20 19 9 32 32 H 1.09003 * 110.02622 * 217.13765 * 21 20 19 33 33 H 1.08998 * 110.03375 * 95.75877 * 21 20 19 34 34 H 1.09005 * 110.02441 * 119.26619 * 22 21 20 35 35 H 1.09003 * 110.02918 * 240.64309 * 22 21 20 36 36 H 1.09001 * 110.48646 * 142.29108 * 23 22 21 37 37 H 1.09002 * 110.48505 * 264.79583 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3137 0.0000 0.0000 3 14 2.2477 1.6178 0.0000 4 1 2.3768 2.1148 -1.3933 5 1 1.5093 2.6156 0.8151 6 1 3.5994 1.4090 0.5785 7 6 2.0090 -1.2043 -0.0005 8 1 1.5078 -2.1173 0.2853 9 7 3.3275 -1.2325 -0.3630 10 6 3.6947 -0.8444 -1.6003 11 8 4.8568 -0.9479 -1.9514 12 6 2.7317 -0.3175 -2.4906 13 6 3.0771 -0.0295 -3.7711 14 6 4.3167 -0.4793 -4.2885 15 6 5.1934 0.2560 -5.0446 16 7 6.2721 -0.4002 -5.3915 17 6 6.3750 -1.6293 -5.0013 18 16 5.0077 -2.0873 -4.0838 19 6 4.3407 -1.6845 0.5938 20 6 5.1250 -2.8994 0.0366 21 6 6.4660 -2.8643 0.7984 22 6 6.6702 -1.4120 1.2643 23 6 5.4464 -0.6142 0.7691 24 1 -0.4849 0.8400 0.0004 25 1 1.7210 -0.1439 -2.1519 26 1 2.4070 0.5427 -4.3956 27 1 5.0121 1.2830 -5.3254 28 1 7.2101 -2.2768 -5.2244 29 1 3.8830 -1.9279 1.5527 30 1 5.2917 -2.7868 -1.0346 31 1 4.5919 -3.8269 0.2453 32 1 7.2793 -3.1619 0.1365 33 1 6.4235 -3.5305 1.6601 34 1 6.7259 -1.3734 2.3523 35 1 7.5831 -1.0052 0.8292 36 1 5.1471 0.1254 1.5118 37 1 5.6662 -0.1302 -0.1826 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000492944063.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:27:26 Heat of formation + Delta-G solvation = 32.060756 kcal Electronic energy + Delta-G solvation = -22101.782481 eV Core-core repulsion = 18971.510645 eV Total energy + Delta-G solvation = -3130.271836 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 292.099 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -41.43537 -40.20766 -38.28640 -36.34446 -34.94955 -33.75164 -30.42792 -29.52722 -28.76868 -26.85169 -26.05018 -24.01900 -21.78813 -21.20662 -21.08516 -20.43893 -19.46285 -18.20513 -17.43163 -17.25792 -16.71008 -16.31700 -15.74609 -15.50325 -15.11720 -14.96030 -14.81327 -14.66406 -14.29493 -14.10305 -13.99976 -13.53203 -12.99535 -12.86584 -12.69982 -12.47058 -12.39300 -12.06931 -11.97894 -11.83745 -11.69262 -11.18733 -11.09596 -10.88781 -10.48375 -10.22273 -9.70919 -9.08974 -8.88551 -8.51777 -6.37184 -0.68688 0.58643 0.91290 1.13367 1.23303 1.30697 1.40956 2.02188 2.16886 2.55779 2.85359 2.88312 3.62167 3.86116 3.87092 4.03789 4.17281 4.29443 4.46639 4.49543 4.57754 4.66222 4.70513 4.75834 4.80881 4.90715 5.00530 5.13300 5.21451 5.24428 5.31940 5.37618 5.42580 5.51390 5.58239 5.75976 6.00627 6.43536 6.90398 6.96893 7.40729 7.85489 8.58015 Molecular weight = 292.10amu Principal moments of inertia in cm(-1) A = 0.013737 B = 0.008824 C = 0.006325 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2037.784252 B = 3172.270764 C = 4425.910975 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.891 5.891 2 C 0.059 3.941 3 Si 0.895 3.105 4 H -0.257 1.257 5 H -0.282 1.282 6 H -0.260 1.260 7 C -0.351 4.351 8 H 0.068 0.932 9 N -0.460 5.460 10 C 0.508 3.492 11 O -0.571 6.571 12 C -0.205 4.205 13 C -0.016 4.016 14 C -0.215 4.215 15 C 0.040 3.960 16 N -0.504 5.504 17 C -0.025 4.025 18 S 0.243 5.757 19 C 0.128 3.872 20 C -0.133 4.133 21 C -0.108 4.108 22 C -0.109 4.109 23 C -0.137 4.137 24 H 0.281 0.719 25 H 0.131 0.869 26 H 0.164 0.836 27 H 0.186 0.814 28 H 0.220 0.780 29 H 0.081 0.919 30 H 0.074 0.926 31 H 0.058 0.942 32 H 0.069 0.931 33 H 0.077 0.923 34 H 0.075 0.925 35 H 0.064 0.936 36 H 0.045 0.955 37 H 0.059 0.941 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.436 -2.999 -4.506 10.878 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.526 5.526 2 C -0.148 4.148 3 Si 0.719 3.281 4 H -0.181 1.181 5 H -0.208 1.208 6 H -0.185 1.185 7 C -0.479 4.479 8 H 0.086 0.914 9 N -0.180 5.180 10 C 0.301 3.699 11 O -0.459 6.459 12 C -0.229 4.229 13 C -0.038 4.038 14 C -0.338 4.338 15 C -0.117 4.117 16 N -0.219 5.219 17 C -0.317 4.317 18 S 0.501 5.499 19 C 0.025 3.975 20 C -0.171 4.171 21 C -0.146 4.146 22 C -0.147 4.147 23 C -0.175 4.175 24 H 0.091 0.909 25 H 0.149 0.851 26 H 0.181 0.819 27 H 0.203 0.797 28 H 0.237 0.763 29 H 0.099 0.901 30 H 0.093 0.907 31 H 0.077 0.923 32 H 0.088 0.912 33 H 0.096 0.904 34 H 0.093 0.907 35 H 0.083 0.917 36 H 0.064 0.936 37 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges 10.037 -3.779 -4.457 11.614 hybrid contribution -0.623 1.980 0.280 2.094 sum 9.414 -1.799 -4.177 10.455 Atomic orbital electron populations 1.69772 1.07327 1.29217 1.46330 1.26048 0.95309 1.00190 0.93224 0.86477 0.80372 0.81400 0.79884 1.18136 1.20755 1.18455 1.18698 0.84482 0.94676 1.50090 0.91396 1.43592 1.06222 1.58496 1.09650 1.17502 0.88718 0.80731 0.82920 1.90738 1.20181 1.58960 1.75994 1.22673 1.01505 1.03622 0.95123 1.20770 0.93370 0.95472 0.94233 1.23868 1.02479 0.99550 1.07880 1.22596 0.89068 1.01548 0.98469 1.65983 1.23642 1.07716 1.24536 1.28911 1.05140 0.96565 1.01098 1.83638 1.14155 1.10359 1.41731 1.22359 0.88297 0.94442 0.92420 1.22699 0.96127 0.96531 1.01770 1.21973 0.96342 0.96390 0.99866 1.21981 0.96640 0.95292 1.00824 1.22689 0.96182 0.98041 1.00604 0.90855 0.85096 0.81867 0.79683 0.76344 0.90086 0.90696 0.92278 0.91218 0.90449 0.90667 0.91740 0.93648 0.92263 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -47.71 13.95 21.68 0.30 -47.41 16 2 C 0.06 3.00 3.74 84.96 0.32 3.32 16 3 Si 0.89 41.01 25.50 68.60 1.75 42.76 16 4 H -0.26 -11.36 6.81 99.48 0.68 -10.69 16 5 H -0.28 -12.68 7.11 99.48 0.71 -11.97 16 6 H -0.26 -12.17 6.01 99.48 0.60 -11.57 16 7 C -0.35 -18.02 8.93 84.12 0.75 -17.26 16 8 H 0.07 3.82 8.06 -2.91 -0.02 3.79 16 9 N -0.46 -21.15 1.81 -616.49 -1.12 -22.27 16 10 C 0.51 22.56 5.09 85.01 0.43 23.00 16 11 O -0.57 -24.60 7.72 -4.79 -0.04 -24.64 16 12 C -0.21 -8.73 7.05 22.45 0.16 -8.57 16 13 C -0.02 -0.57 9.93 22.53 0.22 -0.35 16 14 C -0.22 -7.42 4.63 22.86 0.11 -7.31 16 15 C 0.04 1.28 11.38 84.57 0.96 2.25 16 16 N -0.50 -16.36 10.50 -201.49 -2.12 -18.47 16 17 C -0.03 -0.72 12.20 130.61 1.59 0.88 16 18 S 0.24 7.72 19.62 -56.49 -1.11 6.61 16 19 C 0.13 5.15 3.33 46.31 0.15 5.31 16 20 C -0.13 -4.57 6.22 31.70 0.20 -4.38 16 21 C -0.11 -2.95 6.80 31.32 0.21 -2.73 16 22 C -0.11 -3.17 6.80 31.32 0.21 -2.96 16 23 C -0.14 -5.17 5.66 31.67 0.18 -4.99 16 24 H 0.28 14.06 8.31 -92.71 -0.77 13.29 16 25 H 0.13 6.08 5.12 -2.91 -0.01 6.06 16 26 H 0.16 4.60 8.06 -2.91 -0.02 4.57 16 27 H 0.19 5.03 8.06 -2.91 -0.02 5.01 16 28 H 0.22 4.42 8.06 -2.91 -0.02 4.40 16 29 H 0.08 3.26 7.95 -2.39 -0.02 3.24 16 30 H 0.07 2.83 5.92 -2.39 -0.01 2.81 16 31 H 0.06 1.94 8.14 -2.39 -0.02 1.92 16 32 H 0.07 1.74 8.14 -2.39 -0.02 1.73 16 33 H 0.08 1.79 8.14 -2.39 -0.02 1.77 16 34 H 0.07 1.88 8.14 -2.38 -0.02 1.87 16 35 H 0.06 1.77 8.14 -2.39 -0.02 1.75 16 36 H 0.04 1.75 7.59 -2.39 -0.02 1.73 16 37 H 0.06 2.54 5.90 -2.39 -0.01 2.53 16 Total: -1.00 -59.09 304.51 4.12 -54.97 By element: Atomic # 1 Polarization: 21.30 SS G_CDS: 0.94 Total: 22.24 kcal Atomic # 6 Polarization: -19.31 SS G_CDS: 5.50 Total: -13.81 kcal Atomic # 7 Polarization: -85.22 SS G_CDS: -2.93 Total: -88.15 kcal Atomic # 8 Polarization: -24.60 SS G_CDS: -0.04 Total: -24.64 kcal Atomic # 14 Polarization: 41.01 SS G_CDS: 1.75 Total: 42.76 kcal Atomic # 16 Polarization: 7.72 SS G_CDS: -1.11 Total: 6.61 kcal Total: -59.09 4.12 -54.97 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000492944063.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 87.034 kcal (2) G-P(sol) polarization free energy of solvation -59.092 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 27.942 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.119 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -54.973 kcal (6) G-S(sol) free energy of system = (1) + (5) 32.061 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds