Wall clock time and date at job start Tue Mar 31 2020 06:27:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86807 * 119.99612 * 2 1 4 4 H 1.48505 * 109.46735 * 270.00089 * 3 2 1 5 5 H 1.48493 * 109.47034 * 30.00150 * 3 2 1 6 6 H 1.48498 * 109.47043 * 150.00411 * 3 2 1 7 7 C 1.37872 * 120.00502 * 180.02562 * 2 1 3 8 8 H 1.08000 * 120.00026 * 359.97438 * 7 2 1 9 9 C 1.50698 * 120.00270 * 179.97438 * 7 2 1 10 10 H 1.09002 * 110.43556 * 57.46087 * 9 7 2 11 11 C 1.54887 * 110.59959 * 294.83972 * 9 7 2 12 12 C 1.54895 * 102.74946 * 203.32286 * 11 9 7 13 13 C 1.54263 * 104.19536 * 37.94330 * 12 11 9 14 14 H 1.08997 * 110.07319 * 217.08474 * 13 12 11 15 15 N 1.46496 * 110.03255 * 95.67107 * 13 12 11 16 16 C 1.34785 * 119.99687 * 87.83343 * 15 13 12 17 17 O 1.21772 * 119.99609 * 0.02562 * 16 15 13 18 18 C 1.41541 * 120.00040 * 179.97438 * 16 15 13 19 19 C 1.35561 * 120.00106 * 189.08537 * 18 16 15 20 20 C 1.41719 * 120.00050 * 35.23155 * 19 18 16 21 21 C 1.37071 * 126.19137 * 188.35442 * 20 19 18 22 22 N 1.30967 * 113.84664 * 179.78337 * 21 20 19 23 23 C 1.29356 * 117.48962 * 0.52867 * 22 21 20 24 24 S 1.70918 * 110.65291 * 359.70035 * 23 22 21 25 25 C 1.53876 * 106.59867 * 336.38948 * 13 12 11 26 26 H 0.96998 * 120.00403 * 0.02562 * 1 2 3 27 27 H 1.09004 * 110.75661 * 321.63751 * 11 9 7 28 28 H 1.09001 * 110.75574 * 84.82377 * 11 9 7 29 29 H 1.08998 * 110.48324 * 279.26553 * 12 11 9 30 30 H 1.08997 * 110.48082 * 156.62138 * 12 11 9 31 31 H 0.96991 * 120.00507 * 267.83330 * 15 13 12 32 32 H 1.08005 * 119.99944 * 9.08693 * 18 16 15 33 33 H 1.08003 * 119.99901 * 215.22937 * 19 18 16 34 34 H 1.07999 * 123.07969 * 0.02562 * 21 20 19 35 35 H 1.08003 * 124.67009 * 179.68197 * 23 22 21 36 36 H 1.08996 * 110.03452 * 119.28648 * 25 13 12 37 37 H 1.09003 * 110.03535 * 240.71775 * 25 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6179 0.0000 4 1 2.4965 2.0465 -1.4002 5 1 1.4465 2.6527 0.7000 6 1 3.5467 1.4403 0.6999 7 6 2.0046 -1.1940 -0.0005 8 1 1.4647 -2.1293 -0.0005 9 6 3.5116 -1.1939 -0.0011 10 1 3.8925 -0.6447 0.8599 11 6 4.0560 -0.5845 -1.3169 12 6 5.4749 -1.1979 -1.4163 13 6 5.2999 -2.6415 -0.9014 14 1 6.1749 -2.9418 -0.3251 15 7 5.1038 -3.5561 -2.0289 16 6 6.1698 -4.1067 -2.6431 17 8 7.2956 -3.8442 -2.2605 18 6 5.9804 -4.9908 -3.7321 19 6 7.0316 -5.6863 -4.2313 20 6 8.0500 -6.1517 -3.3626 21 6 9.2383 -6.7210 -3.7403 22 7 10.0060 -7.0603 -2.7350 23 6 9.5613 -6.8348 -1.5414 24 16 8.0146 -6.1101 -1.6013 25 6 4.0516 -2.6390 -0.0016 26 1 -0.4850 0.8400 -0.0004 27 1 3.4435 -0.8884 -2.1658 28 1 4.1058 0.5021 -1.2477 29 1 6.1727 -0.6492 -0.7838 30 1 5.8175 -1.2007 -2.4510 31 1 4.2071 -3.7654 -2.3334 32 1 4.9985 -5.1113 -4.1655 33 1 7.0928 -5.8857 -5.2910 34 1 9.5176 -6.8723 -4.7725 35 1 10.0939 -7.0722 -0.6323 36 1 3.3000 -3.3183 -0.4038 37 1 4.3210 -2.9372 1.0116 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000493026376.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:27:22 Heat of formation + Delta-G solvation = 38.070152 kcal Electronic energy + Delta-G solvation = -20550.593529 eV Core-core repulsion = 17420.582279 eV Total energy + Delta-G solvation = -3130.011249 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 292.099 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -40.11509 -39.51078 -37.54773 -34.34071 -33.65458 -32.13193 -29.69230 -28.51159 -27.73245 -25.81459 -23.86676 -22.89327 -20.60825 -20.23270 -19.70595 -19.15556 -17.84043 -17.19200 -16.89557 -16.03681 -15.39992 -15.05518 -14.62052 -14.57482 -14.16897 -13.96289 -13.58364 -13.50371 -13.01050 -12.85855 -12.57288 -12.38254 -11.50159 -11.42402 -11.24888 -10.97186 -10.65860 -10.58517 -10.24197 -9.99224 -9.89974 -9.72045 -9.68501 -9.49125 -9.13012 -9.05562 -8.57532 -8.39087 -8.13769 -6.11165 -4.10306 -0.26758 1.34765 1.59937 1.77087 2.77812 3.26629 3.32927 3.36364 3.37950 3.59870 4.23727 4.39318 4.80808 4.87011 5.08069 5.09575 5.17120 5.30793 5.36752 5.41876 5.59257 5.85174 5.93669 6.06581 6.09963 6.12197 6.30042 6.37722 6.49219 6.52026 6.66764 6.82122 7.02025 7.07278 7.46899 7.58478 7.72460 7.75372 8.37093 8.47542 8.91695 9.52088 11.01897 Molecular weight = 292.10amu Principal moments of inertia in cm(-1) A = 0.039501 B = 0.003358 C = 0.003327 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 708.664491 B = 8335.404771 C = 8413.002582 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.902 5.902 2 C 0.071 3.929 3 Si 0.880 3.120 4 H -0.278 1.278 5 H -0.295 1.295 6 H -0.264 1.264 7 C -0.510 4.510 8 H 0.073 0.927 9 C 0.011 3.989 10 H 0.034 0.966 11 C -0.128 4.128 12 C -0.131 4.131 13 C 0.139 3.861 14 H 0.082 0.918 15 N -0.704 5.704 16 C 0.535 3.465 17 O -0.544 6.544 18 C -0.249 4.249 19 C 0.033 3.967 20 C -0.240 4.240 21 C 0.071 3.929 22 N -0.487 5.487 23 C -0.026 4.026 24 S 0.265 5.735 25 C -0.112 4.112 26 H 0.263 0.737 27 H 0.066 0.934 28 H 0.045 0.955 29 H 0.063 0.937 30 H 0.056 0.944 31 H 0.402 0.598 32 H 0.141 0.859 33 H 0.145 0.855 34 H 0.176 0.824 35 H 0.193 0.807 36 H 0.069 0.931 37 H 0.059 0.941 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.394 -12.813 -6.744 20.417 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.541 5.541 2 C -0.131 4.131 3 Si 0.709 3.291 4 H -0.204 1.204 5 H -0.222 1.222 6 H -0.189 1.189 7 C -0.548 4.548 8 H 0.091 0.909 9 C -0.008 4.008 10 H 0.052 0.948 11 C -0.166 4.166 12 C -0.170 4.170 13 C 0.034 3.966 14 H 0.100 0.900 15 N -0.353 5.353 16 C 0.325 3.675 17 O -0.427 6.427 18 C -0.273 4.273 19 C 0.011 3.989 20 C -0.362 4.362 21 C -0.089 4.089 22 N -0.201 5.201 23 C -0.318 4.318 24 S 0.524 5.476 25 C -0.150 4.150 26 H 0.073 0.927 27 H 0.084 0.916 28 H 0.064 0.936 29 H 0.082 0.918 30 H 0.075 0.925 31 H 0.237 0.763 32 H 0.159 0.841 33 H 0.163 0.837 34 H 0.193 0.807 35 H 0.210 0.790 36 H 0.087 0.913 37 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges 14.863 -12.424 -5.573 20.157 hybrid contribution 0.155 0.939 -1.224 1.550 sum 15.018 -11.485 -6.797 20.091 Atomic orbital electron populations 1.69898 1.06305 1.26955 1.50894 1.24998 0.94631 0.99055 0.94396 0.86902 0.80121 0.83718 0.78360 1.20431 1.22159 1.18905 1.21042 0.88578 0.94339 1.50848 0.90887 1.19982 0.96570 0.91173 0.93072 0.94831 1.22929 0.93872 0.98525 1.01261 1.22756 0.98614 0.95407 1.00230 1.21757 0.99484 0.88796 0.86526 0.90038 1.46327 1.09001 1.46627 1.33394 1.17189 0.85269 0.82504 0.82534 1.90822 1.23020 1.63408 1.65462 1.22188 0.99963 1.02451 1.02708 1.20486 0.89211 0.91620 0.97596 1.24020 1.02010 1.12276 0.97875 1.22583 0.88681 0.98164 0.99422 1.66077 1.34928 1.20543 0.98582 1.28836 1.01390 1.02017 0.99523 1.84425 1.16113 1.46152 1.00905 1.22424 0.94535 1.00397 0.97664 0.92684 0.91571 0.93603 0.91795 0.92526 0.76251 0.84099 0.83728 0.80665 0.79038 0.91250 0.92223 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -26.91 13.96 55.43 0.77 -26.14 16 2 C 0.07 1.97 5.46 -17.82 -0.10 1.88 16 3 Si 0.88 21.33 24.65 -169.99 -4.19 17.14 16 4 H -0.28 -6.62 7.10 56.52 0.40 -6.21 16 5 H -0.29 -7.20 7.11 56.52 0.40 -6.80 16 6 H -0.26 -6.14 6.47 56.52 0.37 -5.78 16 7 C -0.51 -13.56 9.05 -34.44 -0.31 -13.87 16 8 H 0.07 2.09 7.79 -52.49 -0.41 1.68 16 9 C 0.01 0.24 2.27 -90.11 -0.20 0.04 16 10 H 0.03 0.77 7.06 -51.93 -0.37 0.40 16 11 C -0.13 -2.60 5.31 -24.74 -0.13 -2.73 16 12 C -0.13 -2.28 6.54 -25.07 -0.16 -2.44 16 13 C 0.14 2.23 3.25 -66.82 -0.22 2.01 16 14 H 0.08 1.32 7.56 -51.93 -0.39 0.93 16 15 N -0.70 -9.81 5.02 -55.63 -0.28 -10.09 16 16 C 0.53 7.38 6.48 -15.00 -0.10 7.28 16 17 O -0.54 -8.90 12.34 5.12 0.06 -8.84 16 18 C -0.25 -2.63 9.62 -39.28 -0.38 -3.01 16 19 C 0.03 0.32 9.71 -39.21 -0.38 -0.06 16 20 C -0.24 -2.70 5.52 -38.68 -0.21 -2.92 16 21 C 0.07 0.77 11.38 -18.34 -0.21 0.57 16 22 N -0.49 -5.99 10.50 -15.05 -0.16 -6.14 16 23 C -0.03 -0.29 12.20 51.72 0.63 0.34 16 24 S 0.27 3.09 18.83 -107.50 -2.02 1.07 16 25 C -0.11 -2.01 6.13 -25.61 -0.16 -2.17 16 26 H 0.26 7.41 8.31 -40.82 -0.34 7.07 16 27 H 0.07 1.37 8.05 -51.93 -0.42 0.95 16 28 H 0.05 0.97 5.27 -51.93 -0.27 0.69 16 29 H 0.06 1.07 8.14 -51.93 -0.42 0.65 16 30 H 0.06 0.96 8.04 -51.93 -0.42 0.54 16 31 H 0.40 5.00 8.28 -40.82 -0.34 4.66 16 32 H 0.14 1.12 8.06 -52.48 -0.42 0.70 16 33 H 0.15 0.89 8.06 -52.48 -0.42 0.47 16 34 H 0.18 1.37 8.06 -52.49 -0.42 0.94 16 35 H 0.19 1.47 8.06 -52.48 -0.42 1.05 16 36 H 0.07 1.24 7.14 -51.93 -0.37 0.87 16 37 H 0.06 1.01 8.14 -51.93 -0.42 0.58 16 LS Contribution 314.91 15.07 4.75 4.75 Total: -1.00 -32.24 314.91 -7.69 -39.94 By element: Atomic # 1 Polarization: 8.09 SS G_CDS: -4.69 Total: 3.39 kcal Atomic # 6 Polarization: -13.15 SS G_CDS: -1.93 Total: -15.08 kcal Atomic # 7 Polarization: -42.70 SS G_CDS: 0.34 Total: -42.37 kcal Atomic # 8 Polarization: -8.90 SS G_CDS: 0.06 Total: -8.84 kcal Atomic # 14 Polarization: 21.33 SS G_CDS: -4.19 Total: 17.14 kcal Atomic # 16 Polarization: 3.09 SS G_CDS: -2.02 Total: 1.07 kcal Total LS contribution 4.75 Total: 4.75 kcal Total: -32.24 -7.69 -39.94 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000493026376.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 78.007 kcal (2) G-P(sol) polarization free energy of solvation -32.244 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 45.764 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.693 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.937 kcal (6) G-S(sol) free energy of system = (1) + (5) 38.070 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds