Wall clock time and date at job start Tue Mar 31 2020 06:27:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86807 * 119.99612 * 2 1 4 4 H 1.48505 * 109.46735 * 270.00089 * 3 2 1 5 5 H 1.48493 * 109.47034 * 30.00150 * 3 2 1 6 6 H 1.48498 * 109.47043 * 150.00411 * 3 2 1 7 7 C 1.37872 * 120.00502 * 180.02562 * 2 1 3 8 8 H 1.08000 * 120.00026 * 359.97438 * 7 2 1 9 9 C 1.50698 * 120.00270 * 179.97438 * 7 2 1 10 10 H 1.09002 * 110.43556 * 57.46087 * 9 7 2 11 11 C 1.54887 * 110.59959 * 294.83972 * 9 7 2 12 12 C 1.54895 * 102.74946 * 203.32286 * 11 9 7 13 13 C 1.54263 * 104.19536 * 37.94330 * 12 11 9 14 14 H 1.08997 * 110.07319 * 217.08474 * 13 12 11 15 15 N 1.46496 * 110.03255 * 95.67107 * 13 12 11 16 16 C 1.34785 * 119.99687 * 87.83343 * 15 13 12 17 17 O 1.21772 * 119.99609 * 0.02562 * 16 15 13 18 18 C 1.41541 * 120.00040 * 179.97438 * 16 15 13 19 19 C 1.35561 * 120.00106 * 189.08537 * 18 16 15 20 20 C 1.41719 * 120.00050 * 35.23155 * 19 18 16 21 21 C 1.37071 * 126.19137 * 188.35442 * 20 19 18 22 22 N 1.30967 * 113.84664 * 179.78337 * 21 20 19 23 23 C 1.29356 * 117.48962 * 0.52867 * 22 21 20 24 24 S 1.70918 * 110.65291 * 359.70035 * 23 22 21 25 25 C 1.53876 * 106.59867 * 336.38948 * 13 12 11 26 26 H 0.96998 * 120.00403 * 0.02562 * 1 2 3 27 27 H 1.09004 * 110.75661 * 321.63751 * 11 9 7 28 28 H 1.09001 * 110.75574 * 84.82377 * 11 9 7 29 29 H 1.08998 * 110.48324 * 279.26553 * 12 11 9 30 30 H 1.08997 * 110.48082 * 156.62138 * 12 11 9 31 31 H 0.96991 * 120.00507 * 267.83330 * 15 13 12 32 32 H 1.08005 * 119.99944 * 9.08693 * 18 16 15 33 33 H 1.08003 * 119.99901 * 215.22937 * 19 18 16 34 34 H 1.07999 * 123.07969 * 0.02562 * 21 20 19 35 35 H 1.08003 * 124.67009 * 179.68197 * 23 22 21 36 36 H 1.08996 * 110.03452 * 119.28648 * 25 13 12 37 37 H 1.09003 * 110.03535 * 240.71775 * 25 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6179 0.0000 4 1 2.4965 2.0465 -1.4002 5 1 1.4465 2.6527 0.7000 6 1 3.5467 1.4403 0.6999 7 6 2.0046 -1.1940 -0.0005 8 1 1.4647 -2.1293 -0.0005 9 6 3.5116 -1.1939 -0.0011 10 1 3.8925 -0.6447 0.8599 11 6 4.0560 -0.5845 -1.3169 12 6 5.4749 -1.1979 -1.4163 13 6 5.2999 -2.6415 -0.9014 14 1 6.1749 -2.9418 -0.3251 15 7 5.1038 -3.5561 -2.0289 16 6 6.1698 -4.1067 -2.6431 17 8 7.2956 -3.8442 -2.2605 18 6 5.9804 -4.9908 -3.7321 19 6 7.0316 -5.6863 -4.2313 20 6 8.0500 -6.1517 -3.3626 21 6 9.2383 -6.7210 -3.7403 22 7 10.0060 -7.0603 -2.7350 23 6 9.5613 -6.8348 -1.5414 24 16 8.0146 -6.1101 -1.6013 25 6 4.0516 -2.6390 -0.0016 26 1 -0.4850 0.8400 -0.0004 27 1 3.4435 -0.8884 -2.1658 28 1 4.1058 0.5021 -1.2477 29 1 6.1727 -0.6492 -0.7838 30 1 5.8175 -1.2007 -2.4510 31 1 4.2071 -3.7654 -2.3334 32 1 4.9985 -5.1113 -4.1655 33 1 7.0928 -5.8857 -5.2910 34 1 9.5176 -6.8723 -4.7725 35 1 10.0939 -7.0722 -0.6323 36 1 3.3000 -3.3183 -0.4038 37 1 4.3210 -2.9372 1.0116 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000493026376.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:27:22 Heat of formation + Delta-G solvation = 16.157617 kcal Electronic energy + Delta-G solvation = -20551.543727 eV Core-core repulsion = 17420.582279 eV Total energy + Delta-G solvation = -3130.961448 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 292.099 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -41.17598 -40.37785 -38.95523 -35.38080 -34.96333 -33.95085 -30.73693 -30.05944 -29.10503 -26.74039 -25.52869 -23.98760 -21.60207 -21.31717 -21.00669 -20.56431 -18.95582 -18.78792 -17.96494 -17.13295 -16.82783 -16.33644 -16.04276 -15.50547 -15.44112 -14.86449 -14.80990 -14.61696 -14.32423 -14.18447 -14.02323 -13.74911 -13.15415 -12.87462 -12.57358 -12.31208 -12.24123 -11.82341 -11.62714 -11.51460 -11.45134 -11.28369 -11.03392 -10.87930 -10.67597 -10.57503 -10.15416 -9.40959 -8.94986 -8.26782 -6.28792 -1.07124 0.53884 0.78670 0.95036 1.33861 1.37717 1.47114 1.92839 2.35810 2.37278 2.55076 3.09075 3.50848 3.83379 3.90441 4.06210 4.15798 4.16057 4.30593 4.38421 4.64417 4.66060 4.69751 4.77074 4.93577 4.98072 5.00654 5.11896 5.14321 5.17893 5.26589 5.37044 5.47407 5.66551 5.68976 5.82622 6.34727 6.70061 6.75669 6.78210 7.34111 7.36864 8.89664 Molecular weight = 292.10amu Principal moments of inertia in cm(-1) A = 0.039501 B = 0.003358 C = 0.003327 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 708.664491 B = 8335.404771 C = 8413.002582 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.951 5.951 2 C 0.013 3.987 3 Si 0.937 3.063 4 H -0.269 1.269 5 H -0.298 1.298 6 H -0.246 1.246 7 C -0.506 4.506 8 H 0.039 0.961 9 C 0.004 3.996 10 H 0.030 0.970 11 C -0.124 4.124 12 C -0.122 4.122 13 C 0.151 3.849 14 H 0.085 0.915 15 N -0.706 5.706 16 C 0.534 3.466 17 O -0.573 6.573 18 C -0.269 4.269 19 C 0.049 3.951 20 C -0.255 4.255 21 C 0.071 3.929 22 N -0.512 5.512 23 C -0.020 4.020 24 S 0.232 5.768 25 C -0.104 4.104 26 H 0.264 0.736 27 H 0.057 0.943 28 H 0.040 0.960 29 H 0.072 0.928 30 H 0.062 0.938 31 H 0.409 0.591 32 H 0.167 0.833 33 H 0.185 0.815 34 H 0.205 0.795 35 H 0.217 0.783 36 H 0.065 0.935 37 H 0.070 0.930 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 16.575 -13.295 -8.003 22.706 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.592 5.592 2 C -0.183 4.183 3 Si 0.763 3.237 4 H -0.194 1.194 5 H -0.226 1.226 6 H -0.170 1.170 7 C -0.544 4.544 8 H 0.057 0.943 9 C -0.015 4.015 10 H 0.048 0.952 11 C -0.162 4.162 12 C -0.160 4.160 13 C 0.046 3.954 14 H 0.103 0.897 15 N -0.355 5.355 16 C 0.326 3.674 17 O -0.458 6.458 18 C -0.293 4.293 19 C 0.028 3.972 20 C -0.377 4.377 21 C -0.088 4.088 22 N -0.227 5.227 23 C -0.311 4.311 24 S 0.491 5.509 25 C -0.142 4.142 26 H 0.072 0.928 27 H 0.075 0.925 28 H 0.058 0.942 29 H 0.091 0.909 30 H 0.080 0.920 31 H 0.245 0.755 32 H 0.184 0.816 33 H 0.202 0.798 34 H 0.222 0.778 35 H 0.234 0.766 36 H 0.084 0.916 37 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges 17.054 -12.927 -6.847 22.469 hybrid contribution -0.479 0.949 -0.817 1.341 sum 16.576 -11.978 -7.664 21.840 Atomic orbital electron populations 1.70041 1.08112 1.27798 1.53271 1.25799 0.95268 1.02728 0.94547 0.85973 0.79431 0.79360 0.78901 1.19450 1.22564 1.17007 1.21365 0.91159 0.92859 1.49064 0.94255 1.19968 0.93507 0.94089 0.93890 0.95225 1.22779 0.95635 0.98140 0.99635 1.22685 0.96601 0.95869 1.00894 1.21460 0.98279 0.88729 0.86950 0.89711 1.46242 1.09682 1.46527 1.33074 1.17645 0.84530 0.82554 0.82650 1.90812 1.23988 1.64494 1.66508 1.22240 1.01639 1.03321 1.02051 1.20958 0.87555 0.89676 0.99044 1.24293 1.02913 1.13016 0.97454 1.23084 0.88230 0.96994 1.00470 1.66144 1.35694 1.21553 0.99292 1.29269 1.00852 1.00783 1.00178 1.84535 1.17084 1.46868 1.02448 1.22290 0.95259 0.97684 0.99012 0.92751 0.92469 0.94182 0.90942 0.91951 0.75480 0.81582 0.79841 0.77844 0.76612 0.91611 0.91153 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -58.28 13.96 21.45 0.30 -57.98 16 2 C 0.01 0.76 5.46 84.65 0.46 1.22 16 3 Si 0.94 43.88 24.65 68.60 1.69 45.57 16 4 H -0.27 -12.12 7.10 99.48 0.71 -11.41 16 5 H -0.30 -14.07 7.11 99.48 0.71 -13.36 16 6 H -0.25 -10.71 6.47 99.48 0.64 -10.07 16 7 C -0.51 -27.36 9.05 25.60 0.23 -27.13 16 8 H 0.04 2.33 7.79 -2.91 -0.02 2.31 16 9 C 0.00 0.19 2.27 -10.47 -0.02 0.17 16 10 H 0.03 1.31 7.06 -2.39 -0.02 1.30 16 11 C -0.12 -4.86 5.31 31.89 0.17 -4.69 16 12 C -0.12 -3.96 6.54 31.67 0.21 -3.75 16 13 C 0.15 4.60 3.25 45.72 0.15 4.75 16 14 H 0.08 2.59 7.56 -2.39 -0.02 2.57 16 15 N -0.71 -18.54 5.02 -448.10 -2.25 -20.79 16 16 C 0.53 13.75 6.48 85.05 0.55 14.30 16 17 O -0.57 -17.85 12.34 -4.58 -0.06 -17.90 16 18 C -0.27 -4.99 9.62 22.46 0.22 -4.77 16 19 C 0.05 0.79 9.71 22.51 0.22 1.01 16 20 C -0.25 -5.17 5.52 22.86 0.13 -5.04 16 21 C 0.07 1.37 11.38 84.55 0.96 2.33 16 22 N -0.51 -11.60 10.50 -201.54 -2.12 -13.71 16 23 C -0.02 -0.40 12.20 130.61 1.59 1.19 16 24 S 0.23 5.13 18.83 -56.49 -1.06 4.07 16 25 C -0.10 -3.64 6.13 31.32 0.19 -3.45 16 26 H 0.26 15.24 8.31 -92.71 -0.77 14.47 16 27 H 0.06 2.32 8.05 -2.38 -0.02 2.30 16 28 H 0.04 1.60 5.27 -2.39 -0.01 1.59 16 29 H 0.07 2.24 8.14 -2.39 -0.02 2.22 16 30 H 0.06 1.97 8.04 -2.39 -0.02 1.96 16 31 H 0.41 9.61 8.28 -92.71 -0.77 8.84 16 32 H 0.17 2.15 8.06 -2.91 -0.02 2.13 16 33 H 0.18 1.42 8.06 -2.91 -0.02 1.39 16 34 H 0.20 2.48 8.06 -2.91 -0.02 2.45 16 35 H 0.22 2.93 8.06 -2.91 -0.02 2.91 16 36 H 0.07 2.33 7.14 -2.39 -0.02 2.31 16 37 H 0.07 2.29 8.14 -2.39 -0.02 2.27 16 Total: -1.00 -70.25 314.91 1.82 -68.43 By element: Atomic # 1 Polarization: 15.92 SS G_CDS: 0.26 Total: 16.19 kcal Atomic # 6 Polarization: -28.92 SS G_CDS: 5.05 Total: -23.87 kcal Atomic # 7 Polarization: -88.42 SS G_CDS: -4.07 Total: -92.49 kcal Atomic # 8 Polarization: -17.85 SS G_CDS: -0.06 Total: -17.90 kcal Atomic # 14 Polarization: 43.88 SS G_CDS: 1.69 Total: 45.57 kcal Atomic # 16 Polarization: 5.13 SS G_CDS: -1.06 Total: 4.07 kcal Total: -70.25 1.82 -68.43 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000493026376.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 84.589 kcal (2) G-P(sol) polarization free energy of solvation -70.253 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 14.337 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.821 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.432 kcal (6) G-S(sol) free energy of system = (1) + (5) 16.158 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds