Wall clock time and date at job start Tue Mar 31 2020 06:27:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31512 * 1 3 3 Si 1.86798 * 119.99707 * 2 1 4 4 H 1.48508 * 109.47208 * 180.02562 * 3 2 1 5 5 H 1.48501 * 109.47687 * 300.00082 * 3 2 1 6 6 H 1.48496 * 109.47094 * 60.00550 * 3 2 1 7 7 C 1.37871 * 120.00105 * 180.02562 * 2 1 3 8 8 H 1.08001 * 120.00084 * 179.97438 * 7 2 1 9 9 C 1.50698 * 120.00040 * 359.97438 * 7 2 1 10 10 N 1.46508 * 109.47199 * 179.97438 * 9 7 2 11 11 C 1.46501 * 119.99700 * 89.99884 * 10 9 7 12 12 C 1.53004 * 109.47315 * 89.99843 * 11 10 9 13 13 C 1.52999 * 117.51509 * 116.27966 * 12 11 10 14 14 C 1.52997 * 117.49961 * 184.91044 * 12 11 10 15 15 C 1.34771 * 120.00352 * 269.99744 * 10 9 7 16 16 O 1.21780 * 119.99772 * 0.02562 * 15 10 9 17 17 C 1.41542 * 120.00482 * 179.97438 * 15 10 9 18 18 C 1.35557 * 120.00353 * 186.76989 * 17 15 10 19 19 C 1.41718 * 119.99838 * 12.03999 * 18 17 15 20 20 C 1.37079 * 126.18822 * 225.50039 * 19 18 17 21 21 N 1.30953 * 113.84707 * 179.97438 * 20 19 18 22 22 C 1.29362 * 117.49302 * 0.02562 * 21 20 19 23 23 S 1.70912 * 110.64845 * 359.71850 * 22 21 20 24 24 H 0.97005 * 120.00492 * 359.97438 * 1 2 3 25 25 H 1.09002 * 109.47377 * 59.99806 * 9 7 2 26 26 H 1.09003 * 109.47349 * 299.99802 * 9 7 2 27 27 H 1.09004 * 109.47365 * 330.00434 * 11 10 9 28 28 H 1.08993 * 109.47236 * 210.00178 * 11 10 9 29 29 H 1.09002 * 115.54970 * 330.58926 * 12 11 10 30 30 H 1.09002 * 117.49580 * 214.97187 * 13 12 11 31 31 H 1.08998 * 117.50056 * 359.97438 * 13 12 11 32 32 H 1.08996 * 117.49945 * 359.97438 * 14 12 11 33 33 H 1.09002 * 117.49615 * 145.00153 * 14 12 11 34 34 H 1.08001 * 119.99669 * 6.77522 * 17 15 10 35 35 H 1.08003 * 120.00270 * 192.02912 * 18 17 15 36 36 H 1.07995 * 123.07420 * 0.02562 * 20 19 18 37 37 H 1.07999 * 124.67080 * 180.02562 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2490 1.6178 0.0000 4 1 3.7091 1.3465 -0.0006 5 1 1.8903 2.3966 -1.2125 6 1 1.8903 2.3964 1.2125 7 6 2.0045 -1.1940 -0.0005 8 1 3.0845 -1.1940 -0.0010 9 6 1.2510 -2.4991 -0.0005 10 7 2.2031 -3.6126 -0.0018 11 6 2.6801 -4.1699 1.2664 12 6 1.7497 -5.3013 1.7084 13 6 2.3408 -6.7099 1.7936 14 6 2.0124 -5.9392 3.0740 15 6 2.6401 -4.1244 -1.1694 16 8 2.2439 -3.6609 -2.2236 17 6 3.5603 -5.1999 -1.1707 18 6 4.1050 -5.6246 -2.3371 19 6 3.9603 -4.8453 -3.5119 20 6 3.6153 -5.3106 -4.7543 21 7 3.5505 -4.3768 -5.6701 22 6 3.8121 -3.1635 -5.3055 23 16 4.1838 -3.1021 -3.6384 24 1 -0.4851 0.8400 0.0004 25 1 0.6240 -2.5567 -0.8903 26 1 0.6247 -2.5571 0.8897 27 1 2.6883 -3.3886 2.0264 28 1 3.6894 -4.5598 1.1352 29 1 0.7122 -5.2095 1.3869 30 1 1.6921 -7.5448 1.5284 31 1 3.3925 -6.8310 1.5344 32 1 2.8483 -5.5532 3.6573 33 1 1.1478 -6.2671 3.6510 34 1 3.8284 -5.6821 -0.2423 35 1 4.6494 -6.5568 -2.3710 36 1 3.4146 -6.3518 -4.9589 37 1 3.7929 -2.3068 -5.9628 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000493124430.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:27:14 Heat of formation + Delta-G solvation = 51.703434 kcal Electronic energy + Delta-G solvation = -21034.001826 eV Core-core repulsion = 17904.581760 eV Total energy + Delta-G solvation = -3129.420066 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 292.099 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -41.11878 -40.17703 -38.40474 -36.30220 -34.95689 -34.56322 -30.76026 -29.47284 -27.71369 -26.66699 -25.21757 -23.16261 -22.92769 -21.76971 -21.18603 -19.89644 -18.72350 -18.54862 -18.08605 -17.06855 -16.60831 -16.21228 -16.04367 -15.53649 -15.31599 -14.85108 -14.70942 -14.41193 -14.36534 -14.20579 -13.77885 -13.43805 -13.08582 -12.88598 -12.57750 -12.50108 -12.44604 -12.25385 -12.20381 -11.70661 -11.28788 -11.22399 -10.86156 -10.63892 -10.55317 -10.38175 -9.77898 -9.14353 -9.10182 -8.19888 -6.34823 -0.71782 0.54363 0.84163 1.10058 1.36047 1.37884 1.49805 1.98568 2.32778 2.50383 2.63724 3.01718 3.09217 3.57785 3.82734 4.00749 4.05678 4.07159 4.23412 4.35574 4.41867 4.45492 4.64059 4.76691 4.85091 4.87827 4.98941 5.10156 5.14767 5.21228 5.30131 5.35734 5.36037 5.47120 5.60506 5.90024 6.08891 6.73695 6.85062 6.86589 7.31182 7.54727 8.86597 Molecular weight = 292.10amu Principal moments of inertia in cm(-1) A = 0.009908 B = 0.007622 C = 0.004641 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2825.374801 B = 3672.643684 C = 6031.702669 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.931 5.931 2 C 0.008 3.992 3 Si 0.962 3.038 4 H -0.263 1.263 5 H -0.282 1.282 6 H -0.272 1.272 7 C -0.531 4.531 8 H 0.055 0.945 9 C 0.267 3.733 10 N -0.594 5.594 11 C 0.142 3.858 12 C -0.194 4.194 13 C -0.160 4.160 14 C -0.165 4.165 15 C 0.515 3.485 16 O -0.578 6.578 17 C -0.213 4.213 18 C 0.018 3.982 19 C -0.221 4.221 20 C 0.043 3.957 21 N -0.505 5.505 22 C -0.026 4.026 23 S 0.212 5.788 24 H 0.265 0.735 25 H -0.005 1.005 26 H 0.013 0.987 27 H 0.070 0.930 28 H 0.102 0.898 29 H 0.075 0.925 30 H 0.097 0.903 31 H 0.117 0.883 32 H 0.109 0.891 33 H 0.097 0.903 34 H 0.168 0.832 35 H 0.194 0.806 36 H 0.200 0.800 37 H 0.212 0.788 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.719 -14.066 1.187 18.347 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.571 5.571 2 C -0.191 4.191 3 Si 0.786 3.214 4 H -0.187 1.187 5 H -0.208 1.208 6 H -0.197 1.197 7 C -0.570 4.570 8 H 0.074 0.926 9 C 0.145 3.855 10 N -0.323 5.323 11 C 0.019 3.981 12 C -0.214 4.214 13 C -0.196 4.196 14 C -0.202 4.202 15 C 0.308 3.692 16 O -0.462 6.462 17 C -0.237 4.237 18 C -0.004 4.004 19 C -0.343 4.343 20 C -0.113 4.113 21 N -0.219 5.219 22 C -0.318 4.318 23 S 0.471 5.529 24 H 0.074 0.926 25 H 0.013 0.987 26 H 0.031 0.969 27 H 0.089 0.911 28 H 0.120 0.880 29 H 0.093 0.907 30 H 0.116 0.884 31 H 0.135 0.865 32 H 0.127 0.873 33 H 0.115 0.885 34 H 0.185 0.815 35 H 0.211 0.789 36 H 0.216 0.784 37 H 0.228 0.772 Dipole moment (debyes) X Y Z Total from point charges 11.491 -12.843 0.733 17.249 hybrid contribution -0.853 0.554 -0.206 1.038 sum 10.638 -12.290 0.527 16.263 Atomic orbital electron populations 1.70071 1.07646 1.27894 1.51487 1.25825 0.95679 1.02930 0.94659 0.85449 0.79109 0.78953 0.77861 1.18650 1.20835 1.19733 1.21683 0.93224 0.91613 1.50454 0.92644 1.18618 0.87923 0.83879 0.95056 1.48144 1.44539 1.33342 1.06325 1.21230 0.97122 0.94857 0.84875 1.22646 0.99672 0.95576 1.03478 1.23169 1.02582 0.93043 1.00854 1.23020 1.04006 1.03061 0.90107 1.17915 0.83866 0.84008 0.83399 1.90880 1.60212 1.63748 1.31374 1.22519 1.00321 0.99864 1.01019 1.21042 0.94237 0.97265 0.87808 1.24105 1.13580 0.96741 0.99893 1.22760 1.01481 1.00804 0.86300 1.65977 1.18252 1.00414 1.37280 1.28786 1.05421 0.99026 0.98578 1.84219 1.56942 1.05541 1.06212 0.92603 0.98711 0.96898 0.91150 0.88024 0.90709 0.88418 0.86481 0.87255 0.88502 0.81491 0.78902 0.78369 0.77172 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -56.74 13.29 21.44 0.28 -56.46 16 2 C 0.01 0.44 5.46 84.65 0.46 0.90 16 3 Si 0.96 44.66 29.54 68.60 2.03 46.69 16 4 H -0.26 -11.65 7.11 99.48 0.71 -10.94 16 5 H -0.28 -13.03 7.11 99.48 0.71 -12.32 16 6 H -0.27 -12.06 7.11 99.48 0.71 -11.35 16 7 C -0.53 -30.29 9.39 25.60 0.24 -30.05 16 8 H 0.06 3.11 7.81 -2.91 -0.02 3.09 16 9 C 0.27 14.45 5.16 85.63 0.44 14.90 16 10 N -0.59 -25.00 2.46 -836.81 -2.06 -27.05 16 11 C 0.14 4.39 5.34 86.38 0.46 4.85 16 12 C -0.19 -5.16 6.01 -10.79 -0.06 -5.23 16 13 C -0.16 -2.86 9.68 30.60 0.30 -2.56 16 14 C -0.16 -3.18 10.25 30.59 0.31 -2.86 16 15 C 0.52 20.79 6.99 85.06 0.59 21.38 16 16 O -0.58 -28.07 11.43 -4.60 -0.05 -28.12 16 17 C -0.21 -5.84 9.01 22.46 0.20 -5.64 16 18 C 0.02 0.42 9.92 22.51 0.22 0.65 16 19 C -0.22 -6.71 4.57 22.86 0.10 -6.61 16 20 C 0.04 1.29 11.38 84.55 0.96 2.25 16 21 N -0.50 -16.89 10.50 -201.55 -2.12 -19.00 16 22 C -0.03 -0.85 12.20 130.61 1.59 0.74 16 23 S 0.21 7.36 19.78 -56.49 -1.12 6.24 16 24 H 0.27 15.17 8.31 -92.70 -0.77 14.40 16 25 H -0.01 -0.33 7.42 -2.39 -0.02 -0.35 16 26 H 0.01 0.73 8.07 -2.39 -0.02 0.71 16 27 H 0.07 2.36 8.07 -2.39 -0.02 2.34 16 28 H 0.10 2.41 5.92 -2.39 -0.01 2.39 16 29 H 0.07 2.47 8.14 -2.39 -0.02 2.45 16 30 H 0.10 1.64 8.14 -2.39 -0.02 1.62 16 31 H 0.12 1.53 7.30 -2.39 -0.02 1.52 16 32 H 0.11 1.80 8.14 -2.39 -0.02 1.78 16 33 H 0.10 1.77 8.14 -2.39 -0.02 1.75 16 34 H 0.17 3.25 4.93 -2.91 -0.01 3.23 16 35 H 0.19 2.39 8.06 -2.91 -0.02 2.37 16 36 H 0.20 4.42 8.06 -2.91 -0.02 4.40 16 37 H 0.21 5.44 8.06 -2.91 -0.02 5.41 16 Total: -1.00 -76.35 328.24 3.88 -72.47 By element: Atomic # 1 Polarization: 11.43 SS G_CDS: 1.08 Total: 12.51 kcal Atomic # 6 Polarization: -13.10 SS G_CDS: 5.83 Total: -7.27 kcal Atomic # 7 Polarization: -98.63 SS G_CDS: -3.89 Total: -102.51 kcal Atomic # 8 Polarization: -28.07 SS G_CDS: -0.05 Total: -28.12 kcal Atomic # 14 Polarization: 44.66 SS G_CDS: 2.03 Total: 46.69 kcal Atomic # 16 Polarization: 7.36 SS G_CDS: -1.12 Total: 6.24 kcal Total: -76.35 3.88 -72.47 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000493124430.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 124.172 kcal (2) G-P(sol) polarization free energy of solvation -76.347 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 47.825 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.878 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.469 kcal (6) G-S(sol) free energy of system = (1) + (5) 51.703 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds