Wall clock time and date at job start Tue Mar 31 2020 06:23:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86805 * 120.00082 * 2 1 4 4 H 1.48494 * 109.47200 * 180.02562 * 3 2 1 5 5 H 1.48506 * 109.46832 * 300.00131 * 3 2 1 6 6 H 1.48498 * 109.47104 * 60.00192 * 3 2 1 7 7 C 1.37878 * 120.00160 * 180.02562 * 2 1 3 8 8 H 1.08003 * 119.99817 * 179.97438 * 7 2 1 9 9 C 1.50702 * 119.99656 * 359.97438 * 7 2 1 10 10 H 1.08994 * 110.67250 * 61.78338 * 9 7 2 11 11 C 1.54882 * 110.75854 * 298.54724 * 9 7 2 12 12 C 1.54269 * 104.19831 * 203.74430 * 11 9 7 13 13 C 1.53873 * 106.59646 * 23.61137 * 12 11 9 14 14 H 1.09002 * 110.03070 * 240.71534 * 13 12 11 15 15 N 1.46500 * 110.03147 * 119.33268 * 13 12 11 16 16 C 1.34773 * 119.99894 * 87.09634 * 15 13 12 17 17 O 1.21760 * 120.00218 * 359.97438 * 16 15 13 18 18 C 1.41720 * 120.00137 * 179.97438 * 16 15 13 19 19 C 1.35222 * 119.99946 * 179.97438 * 18 16 15 20 20 C 1.46715 * 119.99745 * 179.97438 * 19 18 16 21 21 C 1.36524 * 123.29565 * 179.72965 * 20 19 18 22 22 S 1.70943 * 108.70845 * 179.97438 * 21 20 19 23 23 C 1.70733 * 91.21657 * 0.28668 * 22 21 20 24 24 N 1.28602 * 110.81064 * 359.82983 * 23 22 21 25 25 C 1.54273 * 106.59758 * 0.02562 * 13 12 11 26 26 H 0.97004 * 120.00181 * 359.97438 * 1 2 3 27 27 H 1.09000 * 110.49014 * 85.06517 * 11 9 7 28 28 H 1.09001 * 110.48811 * 322.42529 * 11 9 7 29 29 H 1.08996 * 110.03023 * 264.32581 * 12 11 9 30 30 H 1.09002 * 110.07027 * 142.91534 * 12 11 9 31 31 H 0.97002 * 119.99840 * 267.08853 * 15 13 12 32 32 H 1.07995 * 119.99548 * 359.97438 * 18 16 15 33 33 H 1.08000 * 120.00365 * 359.97438 * 19 18 16 34 34 H 1.07997 * 125.64688 * 0.02562 * 21 20 19 35 35 H 1.07999 * 124.59144 * 179.81035 * 23 22 21 36 36 H 1.09001 * 110.48533 * 95.07157 * 25 13 12 37 37 H 1.08999 * 110.48202 * 217.71084 * 25 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6178 0.0000 4 1 3.7091 1.3464 -0.0006 5 1 1.8904 2.3965 -1.2126 6 1 1.8905 2.3964 1.2125 7 6 2.0046 -1.1940 -0.0005 8 1 3.0846 -1.1940 -0.0010 9 6 1.2510 -2.4991 -0.0005 10 1 0.6407 -2.5911 -0.8989 11 6 0.3776 -2.6287 1.2720 12 6 0.1830 -4.1494 1.4441 13 6 1.3581 -4.8278 0.7184 14 1 0.9842 -5.4658 -0.0824 15 7 2.1428 -5.6218 1.6671 16 6 1.7958 -6.8980 1.9266 17 8 0.8299 -7.3909 1.3729 18 6 2.5552 -7.6662 2.8440 19 6 2.2067 -8.9465 3.1047 20 6 2.9932 -9.7420 4.0540 21 6 2.6991 -11.0370 4.3707 22 16 3.8489 -11.5990 5.5040 23 6 4.6453 -10.0888 5.4995 24 7 4.0637 -9.2679 4.6985 25 6 2.2261 -3.6956 0.1311 26 1 -0.4850 0.8401 0.0004 27 1 -0.5833 -2.1352 1.1271 28 1 0.8961 -2.2104 2.1347 29 1 -0.7612 -4.4581 0.9955 30 1 0.1966 -4.4109 2.5022 31 1 2.9122 -5.2290 2.1084 32 1 3.4121 -7.2291 3.3348 33 1 1.3495 -9.3835 2.6142 34 1 1.8767 -11.6116 3.9708 35 1 5.5189 -9.8546 6.0897 36 1 3.0430 -3.4501 0.8098 37 1 2.6140 -3.9806 -0.8468 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000493160906.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:23:59 Heat of formation + Delta-G solvation = -8.894860 kcal Electronic energy + Delta-G solvation = -19740.313214 eV Core-core repulsion = 16608.265408 eV Total energy + Delta-G solvation = -3132.047805 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 292.099 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -41.18993 -40.56539 -38.75537 -35.30824 -34.50401 -33.74416 -31.13367 -29.97359 -28.85668 -26.64816 -25.78631 -24.44173 -21.75095 -21.21155 -20.77694 -20.43233 -18.75409 -18.45702 -18.34898 -17.00195 -16.61890 -16.48674 -16.17404 -15.68504 -15.38516 -15.23675 -14.86365 -14.43108 -14.22186 -14.02102 -13.63294 -13.15477 -13.03502 -12.81980 -12.60650 -12.58361 -12.36994 -12.11994 -11.67904 -11.41321 -11.38861 -11.11839 -10.95369 -10.80507 -10.72596 -10.59435 -10.46495 -10.02071 -9.25653 -8.09643 -6.20089 -0.62948 0.30444 0.46512 0.78235 1.42021 1.44018 1.55167 1.84984 2.35321 2.46109 2.51571 3.21092 3.22005 3.80638 3.97964 4.03231 4.13089 4.20193 4.25666 4.32563 4.41965 4.68863 4.77205 4.90739 5.00048 5.02106 5.06212 5.15475 5.19032 5.27732 5.30988 5.41032 5.66734 5.68680 5.93413 5.99995 6.37670 6.61376 6.66947 6.90581 7.26711 7.47688 8.99081 Molecular weight = 292.10amu Principal moments of inertia in cm(-1) A = 0.036908 B = 0.002439 C = 0.002344 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 758.468724 B =11478.295292 C =11941.363163 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.921 5.921 2 C 0.010 3.990 3 Si 0.955 3.045 4 H -0.264 1.264 5 H -0.283 1.283 6 H -0.282 1.282 7 C -0.528 4.528 8 H 0.059 0.941 9 C 0.040 3.960 10 H 0.001 0.999 11 C -0.089 4.089 12 C -0.124 4.124 13 C 0.150 3.850 14 H 0.072 0.928 15 N -0.705 5.705 16 C 0.544 3.456 17 O -0.593 6.593 18 C -0.198 4.198 19 C 0.013 3.987 20 C 0.036 3.964 21 C -0.271 4.271 22 S 0.268 5.732 23 C -0.011 4.011 24 N -0.484 5.484 25 C -0.107 4.107 26 H 0.259 0.741 27 H 0.039 0.961 28 H 0.037 0.963 29 H 0.052 0.948 30 H 0.060 0.940 31 H 0.412 0.588 32 H 0.145 0.855 33 H 0.145 0.855 34 H 0.202 0.798 35 H 0.229 0.771 36 H 0.073 0.927 37 H 0.061 0.939 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.928 -24.623 13.439 29.757 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.560 5.560 2 C -0.189 4.189 3 Si 0.781 3.219 4 H -0.188 1.188 5 H -0.209 1.209 6 H -0.208 1.208 7 C -0.566 4.566 8 H 0.077 0.923 9 C 0.021 3.979 10 H 0.019 0.981 11 C -0.128 4.128 12 C -0.163 4.163 13 C 0.045 3.955 14 H 0.090 0.910 15 N -0.355 5.355 16 C 0.336 3.664 17 O -0.477 6.477 18 C -0.221 4.221 19 C -0.009 4.009 20 C -0.096 4.096 21 C -0.413 4.413 22 S 0.524 5.476 23 C -0.310 4.310 24 N -0.198 5.198 25 C -0.146 4.146 26 H 0.068 0.932 27 H 0.058 0.942 28 H 0.056 0.944 29 H 0.070 0.930 30 H 0.079 0.921 31 H 0.249 0.751 32 H 0.163 0.837 33 H 0.163 0.837 34 H 0.219 0.781 35 H 0.246 0.754 36 H 0.092 0.908 37 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges 9.557 -25.221 13.544 30.181 hybrid contribution -0.254 2.087 -0.695 2.215 sum 9.304 -23.133 12.849 28.050 Atomic orbital electron populations 1.70111 1.07336 1.27068 1.51497 1.25796 0.95641 1.02544 0.94924 0.85552 0.79250 0.79734 0.77388 1.18777 1.20940 1.20827 1.21511 0.93126 0.91626 1.50326 0.92311 1.19542 0.92814 0.92326 0.93203 0.98088 1.22078 0.99680 0.92389 0.98626 1.22526 0.97662 0.96392 0.99688 1.21499 0.91662 0.91626 0.90740 0.90995 1.46112 1.32422 1.12227 1.44719 1.17523 0.84374 0.82184 0.82360 1.90782 1.30557 1.72246 1.54117 1.21966 1.02783 0.96048 1.01331 1.21886 0.95489 0.92530 0.91000 1.19624 0.95744 0.92729 1.01513 1.27354 1.08316 0.99410 1.06184 1.82654 1.16604 1.14421 1.33905 1.28988 1.05942 0.94256 1.01773 1.66927 1.08213 1.35828 1.08793 1.22576 0.98088 0.93879 1.00008 0.93186 0.94220 0.94378 0.92962 0.92140 0.75100 0.83744 0.83721 0.78108 0.75431 0.90818 0.91984 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -54.17 12.02 21.45 0.26 -53.91 16 2 C 0.01 0.53 5.33 84.65 0.45 0.98 16 3 Si 0.95 43.69 29.54 68.60 2.03 45.72 16 4 H -0.26 -11.54 7.11 99.48 0.71 -10.83 16 5 H -0.28 -12.82 7.11 99.48 0.71 -12.12 16 6 H -0.28 -12.72 7.11 99.48 0.71 -12.01 16 7 C -0.53 -28.86 8.54 25.60 0.22 -28.64 16 8 H 0.06 3.11 7.78 -2.91 -0.02 3.08 16 9 C 0.04 2.01 2.82 -10.24 -0.03 1.99 16 10 H 0.00 0.05 8.14 -2.39 -0.02 0.03 16 11 C -0.09 -4.31 5.57 31.67 0.18 -4.14 16 12 C -0.12 -5.06 6.59 31.32 0.21 -4.85 16 13 C 0.15 5.62 3.23 45.72 0.15 5.77 16 14 H 0.07 2.86 7.59 -2.39 -0.02 2.85 16 15 N -0.70 -22.14 4.98 -447.94 -2.23 -24.37 16 16 C 0.54 17.57 7.56 85.10 0.64 18.22 16 17 O -0.59 -23.30 15.77 -4.54 -0.07 -23.37 16 18 C -0.20 -5.14 9.38 22.43 0.21 -4.93 16 19 C 0.01 0.31 9.52 23.79 0.23 0.54 16 20 C 0.04 0.70 6.66 40.68 0.27 0.97 16 21 C -0.27 -3.53 10.99 67.42 0.74 -2.79 16 22 S 0.27 2.03 22.96 -56.49 -1.30 0.73 16 23 C -0.01 -0.13 12.15 130.72 1.59 1.46 16 24 N -0.48 -9.45 9.96 -192.58 -1.92 -11.37 16 25 C -0.11 -4.31 5.94 31.68 0.19 -4.12 16 26 H 0.26 14.51 8.31 -92.71 -0.77 13.74 16 27 H 0.04 2.12 7.37 -2.39 -0.02 2.10 16 28 H 0.04 1.86 8.04 -2.39 -0.02 1.84 16 29 H 0.05 2.15 8.14 -2.39 -0.02 2.13 16 30 H 0.06 2.32 7.92 -2.39 -0.02 2.30 16 31 H 0.41 10.81 8.31 -92.71 -0.77 10.04 16 32 H 0.14 3.39 7.59 -2.91 -0.02 3.37 16 33 H 0.15 3.30 7.45 -2.91 -0.02 3.28 16 34 H 0.20 1.69 8.06 -2.91 -0.02 1.67 16 35 H 0.23 0.98 8.06 -2.91 -0.02 0.96 16 36 H 0.07 2.77 7.63 -2.39 -0.02 2.75 16 37 H 0.06 2.37 8.14 -2.39 -0.02 2.35 16 Total: -1.00 -70.71 329.37 2.12 -68.58 By element: Atomic # 1 Polarization: 17.22 SS G_CDS: 0.32 Total: 17.53 kcal Atomic # 6 Polarization: -24.58 SS G_CDS: 5.04 Total: -19.54 kcal Atomic # 7 Polarization: -85.77 SS G_CDS: -3.89 Total: -89.66 kcal Atomic # 8 Polarization: -23.30 SS G_CDS: -0.07 Total: -23.37 kcal Atomic # 14 Polarization: 43.69 SS G_CDS: 2.03 Total: 45.72 kcal Atomic # 16 Polarization: 2.03 SS G_CDS: -1.30 Total: 0.73 kcal Total: -70.71 2.12 -68.58 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000493160906.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 59.690 kcal (2) G-P(sol) polarization free energy of solvation -70.709 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -11.020 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.125 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.584 kcal (6) G-S(sol) free energy of system = (1) + (5) -8.895 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds