Wall clock time and date at job start Tue Mar 31 2020 06:24:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31512 * 1 3 3 Si 1.86797 * 119.99825 * 2 1 4 4 H 1.48503 * 109.47392 * 179.97438 * 3 2 1 5 5 H 1.48497 * 109.47089 * 299.99806 * 3 2 1 6 6 H 1.48506 * 109.47235 * 59.99746 * 3 2 1 7 7 C 1.37879 * 120.00211 * 179.97438 * 2 1 3 8 8 H 1.07998 * 119.99839 * 179.97438 * 7 2 1 9 9 C 1.50701 * 119.99803 * 0.02562 * 7 2 1 10 10 H 1.09005 * 110.66812 * 61.78177 * 9 7 2 11 11 C 1.54884 * 110.75752 * 298.54392 * 9 7 2 12 12 C 1.54264 * 104.19448 * 203.74251 * 11 9 7 13 13 C 1.53878 * 106.59842 * 23.61082 * 12 11 9 14 14 H 1.09001 * 110.03208 * 240.66381 * 13 12 11 15 15 N 1.46504 * 110.03191 * 119.28332 * 13 12 11 16 16 C 1.34779 * 119.99721 * 87.09122 * 15 13 12 17 17 O 1.21756 * 120.00119 * 359.97438 * 16 15 13 18 18 C 1.41718 * 119.99662 * 179.97438 * 16 15 13 19 19 C 1.35223 * 120.00074 * 188.30260 * 18 16 15 20 20 C 1.46719 * 119.99602 * 30.09427 * 19 18 16 21 21 C 1.36531 * 123.29716 * 185.44551 * 20 19 18 22 22 S 1.70941 * 108.70986 * 180.02562 * 21 20 19 23 23 C 1.70732 * 91.21625 * 359.97438 * 22 21 20 24 24 N 1.28602 * 110.81339 * 0.24760 * 23 22 21 25 25 C 1.54265 * 106.64070 * 359.97196 * 13 12 11 26 26 H 0.97001 * 120.00057 * 0.02562 * 1 2 3 27 27 H 1.08997 * 110.48745 * 85.06356 * 11 9 7 28 28 H 1.08994 * 110.48533 * 322.41946 * 11 9 7 29 29 H 1.09002 * 110.03693 * 264.32450 * 12 11 9 30 30 H 1.09007 * 110.07494 * 142.91579 * 12 11 9 31 31 H 0.97000 * 120.00120 * 267.09261 * 15 13 12 32 32 H 1.07997 * 119.99670 * 8.30646 * 18 16 15 33 33 H 1.07996 * 120.00593 * 210.08751 * 19 18 16 34 34 H 1.08000 * 125.64380 * 0.03995 * 21 20 19 35 35 H 1.08001 * 124.59440 * 179.97438 * 23 22 21 36 36 H 1.09007 * 110.48192 * 95.09596 * 25 13 12 37 37 H 1.08998 * 110.48509 * 217.73810 * 25 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 3.7091 1.3465 0.0006 5 1 1.8903 2.3964 -1.2125 6 1 1.8902 2.3965 1.2125 7 6 2.0046 -1.1940 0.0005 8 1 3.0845 -1.1940 0.0001 9 6 1.2511 -2.4991 0.0005 10 1 0.6414 -2.5914 -0.8984 11 6 0.3768 -2.6282 1.2725 12 6 0.1821 -4.1488 1.4450 13 6 1.3578 -4.8275 0.7203 14 1 0.9843 -5.4664 -0.0799 15 7 2.1425 -5.6202 1.6702 16 6 1.7958 -6.8962 1.9309 17 8 0.8303 -7.3900 1.3775 18 6 2.5552 -7.6632 2.8493 19 6 2.3143 -8.9867 2.9866 20 6 1.8165 -9.7638 1.8461 21 6 1.4491 -11.0757 1.9361 22 16 0.9312 -11.6070 0.3961 23 6 1.2292 -10.0661 -0.2760 24 7 1.6826 -9.2584 0.6161 25 6 2.2261 -3.6964 0.1317 26 1 -0.4850 0.8401 -0.0004 27 1 -0.5841 -2.1347 1.1267 28 1 0.8946 -2.2096 2.1354 29 1 -0.7618 -4.4578 0.9959 30 1 0.1949 -4.4100 2.5032 31 1 2.9115 -5.2266 2.1114 32 1 3.3263 -7.1906 3.4396 33 1 2.4884 -9.4717 3.9357 34 1 1.4804 -11.6780 2.8320 35 1 1.0639 -9.8062 -1.3111 36 1 3.0431 -3.4503 0.8102 37 1 2.6139 -3.9826 -0.8459 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000493161368.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:24:01 Heat of formation + Delta-G solvation = 41.457837 kcal Electronic energy + Delta-G solvation = -20456.959906 eV Core-core repulsion = 17327.095558 eV Total energy + Delta-G solvation = -3129.864348 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 292.099 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -40.15741 -39.00501 -36.93952 -33.50504 -33.34292 -31.85550 -30.04008 -28.08922 -27.13958 -25.29340 -24.14230 -23.13214 -20.61292 -19.67299 -19.26892 -18.92435 -17.75303 -16.99320 -16.42942 -15.76068 -15.13070 -14.71779 -14.50796 -14.38513 -13.87554 -13.78314 -13.50106 -13.34776 -12.79583 -12.50191 -12.23107 -11.73270 -11.62586 -11.05492 -10.93714 -10.86214 -10.51464 -10.23541 -10.10116 -9.86958 -9.71353 -9.61967 -9.45985 -9.25506 -9.13328 -8.74640 -8.36047 -8.27980 -8.13585 -5.97496 -4.00781 0.27419 1.22522 1.33410 1.69391 3.12259 3.31031 3.39231 3.42580 3.78268 3.86343 4.16324 4.46341 4.82297 4.97869 5.10419 5.23733 5.34792 5.38413 5.66342 5.78843 5.89381 5.95845 6.13170 6.17817 6.42847 6.50512 6.70650 6.77660 6.85278 6.98730 7.09228 7.35247 7.42859 7.71480 7.76824 7.93642 8.06397 8.08567 8.47316 8.80008 9.01672 9.63162 11.11599 Molecular weight = 292.10amu Principal moments of inertia in cm(-1) A = 0.040851 B = 0.002926 C = 0.002864 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 685.258137 B = 9568.233676 C = 9774.644079 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.888 5.888 2 C 0.062 3.938 3 Si 0.889 3.111 4 H -0.274 1.274 5 H -0.285 1.285 6 H -0.285 1.285 7 C -0.513 4.513 8 H 0.055 0.945 9 C 0.051 3.949 10 H 0.031 0.969 11 C -0.099 4.099 12 C -0.133 4.133 13 C 0.143 3.857 14 H 0.078 0.922 15 N -0.718 5.718 16 C 0.537 3.463 17 O -0.518 6.518 18 C -0.186 4.186 19 C -0.014 4.014 20 C 0.081 3.919 21 C -0.280 4.280 22 S 0.154 5.846 23 C 0.003 3.997 24 N -0.394 5.394 25 C -0.120 4.120 26 H 0.258 0.742 27 H 0.068 0.932 28 H 0.045 0.955 29 H 0.052 0.948 30 H 0.047 0.953 31 H 0.394 0.606 32 H 0.135 0.865 33 H 0.143 0.857 34 H 0.177 0.823 35 H 0.195 0.805 36 H 0.059 0.941 37 H 0.051 0.949 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.362 -22.471 5.076 23.446 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.527 5.527 2 C -0.140 4.140 3 Si 0.717 3.283 4 H -0.198 1.198 5 H -0.211 1.211 6 H -0.211 1.211 7 C -0.551 4.551 8 H 0.074 0.926 9 C 0.032 3.968 10 H 0.049 0.951 11 C -0.138 4.138 12 C -0.172 4.172 13 C 0.038 3.962 14 H 0.096 0.904 15 N -0.369 5.369 16 C 0.326 3.674 17 O -0.395 6.395 18 C -0.209 4.209 19 C -0.037 4.037 20 C -0.052 4.052 21 C -0.420 4.420 22 S 0.409 5.591 23 C -0.298 4.298 24 N -0.105 5.105 25 C -0.158 4.158 26 H 0.068 0.932 27 H 0.086 0.914 28 H 0.064 0.936 29 H 0.071 0.929 30 H 0.066 0.934 31 H 0.228 0.772 32 H 0.152 0.848 33 H 0.161 0.839 34 H 0.194 0.806 35 H 0.212 0.788 36 H 0.078 0.922 37 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges 3.252 -23.068 4.054 23.647 hybrid contribution 1.044 1.755 1.103 2.321 sum 4.296 -21.314 5.158 22.346 Atomic orbital electron populations 1.69975 1.05863 1.26255 1.50597 1.24983 0.94829 0.98996 0.95172 0.86592 0.80143 0.84061 0.77507 1.19839 1.21106 1.21134 1.21147 0.92775 0.90473 1.50690 0.92638 1.19564 0.92040 0.91074 0.94106 0.95087 1.22291 1.01538 0.90469 0.99479 1.22645 0.97136 0.98715 0.98730 1.21747 0.91986 0.91854 0.90565 0.90423 1.46273 1.32211 1.12919 1.45497 1.17015 0.86115 0.82138 0.82159 1.90805 1.28584 1.70469 1.49612 1.22299 1.00258 0.95371 1.02968 1.21677 0.94412 0.93398 0.94168 1.19685 1.02768 0.90363 0.92363 1.26813 1.10678 1.00460 1.04046 1.82714 1.59274 1.16790 1.00310 1.28510 1.04470 0.92555 1.04280 1.67214 1.12227 1.31470 0.99587 1.22749 0.98675 0.95518 0.98889 0.93170 0.91371 0.93600 0.92899 0.93395 0.77242 0.84757 0.83926 0.80606 0.78787 0.92220 0.93044 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -25.63 12.02 55.43 0.67 -24.96 16 2 C 0.06 1.71 5.33 -17.82 -0.10 1.62 16 3 Si 0.89 21.27 29.54 -169.99 -5.02 16.25 16 4 H -0.27 -6.43 7.11 56.52 0.40 -6.03 16 5 H -0.28 -6.80 7.11 56.52 0.40 -6.40 16 6 H -0.29 -6.79 7.11 56.52 0.40 -6.39 16 7 C -0.51 -13.99 8.54 -34.44 -0.29 -14.28 16 8 H 0.06 1.49 7.78 -52.49 -0.41 1.08 16 9 C 0.05 1.27 2.82 -89.74 -0.25 1.02 16 10 H 0.03 0.84 8.14 -51.93 -0.42 0.42 16 11 C -0.10 -2.36 5.57 -25.08 -0.14 -2.50 16 12 C -0.13 -2.74 6.59 -25.61 -0.17 -2.91 16 13 C 0.14 2.74 3.23 -66.81 -0.22 2.53 16 14 H 0.08 1.61 7.58 -51.93 -0.39 1.21 16 15 N -0.72 -11.68 4.98 -55.58 -0.28 -11.96 16 16 C 0.54 8.84 6.96 -14.93 -0.10 8.74 16 17 O -0.52 -10.23 12.60 5.14 0.06 -10.17 16 18 C -0.19 -2.28 9.74 -39.33 -0.38 -2.66 16 19 C -0.01 -0.16 9.89 -37.23 -0.37 -0.52 16 20 C 0.08 1.04 5.99 -84.27 -0.50 0.54 16 21 C -0.28 -2.76 10.99 30.12 0.33 -2.43 16 22 S 0.15 1.36 22.96 -107.50 -2.47 -1.11 16 23 C 0.00 0.03 12.15 51.41 0.62 0.66 16 24 N -0.39 -5.93 6.88 -12.22 -0.08 -6.01 16 25 C -0.12 -2.47 5.95 -25.03 -0.15 -2.62 16 26 H 0.26 7.11 8.31 -40.82 -0.34 6.78 16 27 H 0.07 1.77 7.37 -51.93 -0.38 1.39 16 28 H 0.05 1.11 8.04 -51.93 -0.42 0.69 16 29 H 0.05 1.10 8.14 -51.93 -0.42 0.68 16 30 H 0.05 0.94 7.92 -51.93 -0.41 0.53 16 31 H 0.39 5.43 8.31 -40.82 -0.34 5.09 16 32 H 0.13 1.19 8.06 -52.49 -0.42 0.77 16 33 H 0.14 0.99 8.06 -52.49 -0.42 0.57 16 34 H 0.18 1.19 8.06 -52.49 -0.42 0.77 16 35 H 0.20 1.84 8.06 -52.49 -0.42 1.41 16 36 H 0.06 1.18 7.63 -51.93 -0.40 0.78 16 37 H 0.05 1.02 8.14 -51.93 -0.42 0.60 16 LS Contribution 323.65 15.07 4.88 4.88 Total: -1.00 -33.18 323.65 -8.80 -41.98 By element: Atomic # 1 Polarization: 8.79 SS G_CDS: -4.84 Total: 3.95 kcal Atomic # 6 Polarization: -11.12 SS G_CDS: -1.72 Total: -12.84 kcal Atomic # 7 Polarization: -43.24 SS G_CDS: 0.31 Total: -42.93 kcal Atomic # 8 Polarization: -10.23 SS G_CDS: 0.06 Total: -10.17 kcal Atomic # 14 Polarization: 21.27 SS G_CDS: -5.02 Total: 16.25 kcal Atomic # 16 Polarization: 1.36 SS G_CDS: -2.47 Total: -1.11 kcal Total LS contribution 4.88 Total: 4.88 kcal Total: -33.18 -8.80 -41.98 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000493161368.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 83.441 kcal (2) G-P(sol) polarization free energy of solvation -33.179 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 50.262 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.804 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.983 kcal (6) G-S(sol) free energy of system = (1) + (5) 41.458 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds