Wall clock time and date at job start Tue Mar 31 2020 06:24:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31512 * 1 3 3 Si 1.86797 * 119.99825 * 2 1 4 4 H 1.48503 * 109.47392 * 179.97438 * 3 2 1 5 5 H 1.48497 * 109.47089 * 299.99806 * 3 2 1 6 6 H 1.48506 * 109.47235 * 59.99746 * 3 2 1 7 7 C 1.37879 * 120.00211 * 179.97438 * 2 1 3 8 8 H 1.07998 * 119.99839 * 179.97438 * 7 2 1 9 9 C 1.50701 * 119.99803 * 0.02562 * 7 2 1 10 10 H 1.09005 * 110.66812 * 61.78177 * 9 7 2 11 11 C 1.54884 * 110.75752 * 298.54392 * 9 7 2 12 12 C 1.54264 * 104.19448 * 203.74251 * 11 9 7 13 13 C 1.53878 * 106.59842 * 23.61082 * 12 11 9 14 14 H 1.09001 * 110.03208 * 240.66381 * 13 12 11 15 15 N 1.46504 * 110.03191 * 119.28332 * 13 12 11 16 16 C 1.34779 * 119.99721 * 87.09122 * 15 13 12 17 17 O 1.21756 * 120.00119 * 359.97438 * 16 15 13 18 18 C 1.41718 * 119.99662 * 179.97438 * 16 15 13 19 19 C 1.35223 * 120.00074 * 188.30260 * 18 16 15 20 20 C 1.46719 * 119.99602 * 30.09427 * 19 18 16 21 21 C 1.36531 * 123.29716 * 185.44551 * 20 19 18 22 22 S 1.70941 * 108.70986 * 180.02562 * 21 20 19 23 23 C 1.70732 * 91.21625 * 359.97438 * 22 21 20 24 24 N 1.28602 * 110.81339 * 0.24760 * 23 22 21 25 25 C 1.54265 * 106.64070 * 359.97196 * 13 12 11 26 26 H 0.97001 * 120.00057 * 0.02562 * 1 2 3 27 27 H 1.08997 * 110.48745 * 85.06356 * 11 9 7 28 28 H 1.08994 * 110.48533 * 322.41946 * 11 9 7 29 29 H 1.09002 * 110.03693 * 264.32450 * 12 11 9 30 30 H 1.09007 * 110.07494 * 142.91579 * 12 11 9 31 31 H 0.97000 * 120.00120 * 267.09261 * 15 13 12 32 32 H 1.07997 * 119.99670 * 8.30646 * 18 16 15 33 33 H 1.07996 * 120.00593 * 210.08751 * 19 18 16 34 34 H 1.08000 * 125.64380 * 0.03995 * 21 20 19 35 35 H 1.08001 * 124.59440 * 179.97438 * 23 22 21 36 36 H 1.09007 * 110.48192 * 95.09596 * 25 13 12 37 37 H 1.08998 * 110.48509 * 217.73810 * 25 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 3.7091 1.3465 0.0006 5 1 1.8903 2.3964 -1.2125 6 1 1.8902 2.3965 1.2125 7 6 2.0046 -1.1940 0.0005 8 1 3.0845 -1.1940 0.0001 9 6 1.2511 -2.4991 0.0005 10 1 0.6414 -2.5914 -0.8984 11 6 0.3768 -2.6282 1.2725 12 6 0.1821 -4.1488 1.4450 13 6 1.3578 -4.8275 0.7203 14 1 0.9843 -5.4664 -0.0799 15 7 2.1425 -5.6202 1.6702 16 6 1.7958 -6.8962 1.9309 17 8 0.8303 -7.3900 1.3775 18 6 2.5552 -7.6632 2.8493 19 6 2.3143 -8.9867 2.9866 20 6 1.8165 -9.7638 1.8461 21 6 1.4491 -11.0757 1.9361 22 16 0.9312 -11.6070 0.3961 23 6 1.2292 -10.0661 -0.2760 24 7 1.6826 -9.2584 0.6161 25 6 2.2261 -3.6964 0.1317 26 1 -0.4850 0.8401 -0.0004 27 1 -0.5841 -2.1347 1.1267 28 1 0.8946 -2.2096 2.1354 29 1 -0.7618 -4.4578 0.9959 30 1 0.1949 -4.4100 2.5032 31 1 2.9115 -5.2266 2.1114 32 1 3.3263 -7.1906 3.4396 33 1 2.4884 -9.4717 3.9357 34 1 1.4804 -11.6780 2.8320 35 1 1.0639 -9.8062 -1.3111 36 1 3.0431 -3.4503 0.8102 37 1 2.6139 -3.9826 -0.8459 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000493161368.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:24:01 Heat of formation + Delta-G solvation = 20.133232 kcal Electronic energy + Delta-G solvation = -20457.884610 eV Core-core repulsion = 17327.095558 eV Total energy + Delta-G solvation = -3130.789053 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 292.099 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -41.19932 -40.15672 -38.56106 -35.18840 -34.30351 -33.64913 -30.93233 -29.95966 -28.78121 -26.32639 -25.78348 -24.37823 -21.76904 -21.26483 -20.80505 -20.12303 -18.77923 -18.46197 -17.87919 -16.98958 -16.61051 -16.36910 -16.05043 -15.45672 -15.17621 -15.00167 -14.51171 -14.31599 -14.10970 -14.03376 -13.60212 -13.60051 -13.02724 -12.81067 -12.51848 -12.43275 -12.33927 -12.08138 -11.66325 -11.38886 -11.08583 -10.95099 -10.81025 -10.70895 -10.48686 -10.46410 -10.31873 -9.66328 -8.97517 -8.09565 -6.20347 -0.53547 0.36069 0.59320 0.90620 1.42013 1.43757 1.55221 2.21798 2.44411 2.60288 2.68635 3.20912 3.43690 3.92100 4.05933 4.08862 4.21858 4.23178 4.38170 4.42346 4.61736 4.69688 4.81004 4.93569 5.04990 5.06402 5.08836 5.15427 5.29965 5.32526 5.39415 5.45630 5.66360 5.79386 5.95534 5.99366 6.37655 6.86186 6.90739 6.92696 7.47352 7.60257 8.99144 Molecular weight = 292.10amu Principal moments of inertia in cm(-1) A = 0.040851 B = 0.002926 C = 0.002864 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 685.258137 B = 9568.233676 C = 9774.644079 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.921 5.921 2 C 0.009 3.991 3 Si 0.956 3.044 4 H -0.263 1.263 5 H -0.283 1.283 6 H -0.282 1.282 7 C -0.528 4.528 8 H 0.059 0.941 9 C 0.040 3.960 10 H -0.003 1.003 11 C -0.088 4.088 12 C -0.121 4.121 13 C 0.158 3.842 14 H 0.060 0.940 15 N -0.715 5.715 16 C 0.534 3.466 17 O -0.558 6.558 18 C -0.218 4.218 19 C 0.009 3.991 20 C 0.033 3.967 21 C -0.268 4.268 22 S 0.225 5.775 23 C -0.032 4.032 24 N -0.441 5.441 25 C -0.105 4.105 26 H 0.259 0.741 27 H 0.037 0.963 28 H 0.038 0.962 29 H 0.044 0.956 30 H 0.059 0.941 31 H 0.408 0.592 32 H 0.168 0.832 33 H 0.188 0.812 34 H 0.211 0.789 35 H 0.201 0.799 36 H 0.073 0.927 37 H 0.055 0.945 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.924 -24.466 6.695 26.048 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.560 5.560 2 C -0.189 4.189 3 Si 0.782 3.218 4 H -0.187 1.187 5 H -0.210 1.210 6 H -0.208 1.208 7 C -0.566 4.566 8 H 0.077 0.923 9 C 0.022 3.978 10 H 0.015 0.985 11 C -0.126 4.126 12 C -0.160 4.160 13 C 0.053 3.947 14 H 0.078 0.922 15 N -0.367 5.367 16 C 0.325 3.675 17 O -0.438 6.438 18 C -0.241 4.241 19 C -0.012 4.012 20 C -0.100 4.100 21 C -0.408 4.408 22 S 0.481 5.519 23 C -0.332 4.332 24 N -0.153 5.153 25 C -0.143 4.143 26 H 0.068 0.932 27 H 0.056 0.944 28 H 0.057 0.943 29 H 0.063 0.937 30 H 0.078 0.922 31 H 0.244 0.756 32 H 0.186 0.814 33 H 0.205 0.795 34 H 0.228 0.772 35 H 0.218 0.782 36 H 0.091 0.909 37 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges 4.847 -25.077 5.677 26.164 hybrid contribution 0.472 2.162 0.536 2.277 sum 5.319 -22.915 6.213 24.331 Atomic orbital electron populations 1.70118 1.07371 1.27061 1.51468 1.25809 0.95649 1.02585 0.94883 0.85534 0.79243 0.79631 0.77405 1.18737 1.20952 1.20754 1.21504 0.93104 0.91605 1.50386 0.92325 1.19543 0.92810 0.92401 0.93083 0.98458 1.22058 0.99542 0.92397 0.98605 1.22505 0.97541 0.96370 0.99591 1.21281 0.91484 0.91308 0.90655 0.92154 1.46108 1.32395 1.13033 1.45162 1.17691 0.86029 0.81885 0.81881 1.90786 1.30547 1.71073 1.51381 1.22302 1.02330 0.95923 1.03566 1.22320 0.90999 0.93022 0.94900 1.20132 1.05364 0.91924 0.92540 1.27360 1.07860 0.99760 1.05869 1.82436 1.57031 1.13637 0.98820 1.28749 1.05168 0.94470 1.04807 1.67193 1.13571 1.33561 1.01013 1.22549 0.98081 0.94020 0.99700 0.93196 0.94406 0.94269 0.93737 0.92185 0.75635 0.81431 0.79461 0.77177 0.78188 0.90873 0.92584 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -54.54 12.02 21.45 0.26 -54.28 16 2 C 0.01 0.52 5.33 84.66 0.45 0.97 16 3 Si 0.96 43.85 29.54 68.60 2.03 45.88 16 4 H -0.26 -11.53 7.11 99.48 0.71 -10.83 16 5 H -0.28 -12.86 7.11 99.48 0.71 -12.15 16 6 H -0.28 -12.68 7.11 99.48 0.71 -11.98 16 7 C -0.53 -29.17 8.54 25.60 0.22 -28.95 16 8 H 0.06 3.13 7.78 -2.91 -0.02 3.11 16 9 C 0.04 2.08 2.82 -10.22 -0.03 2.05 16 10 H 0.00 -0.16 8.14 -2.38 -0.02 -0.18 16 11 C -0.09 -4.30 5.57 31.67 0.18 -4.12 16 12 C -0.12 -5.09 6.59 31.32 0.21 -4.88 16 13 C 0.16 6.17 3.23 45.72 0.15 6.32 16 14 H 0.06 2.58 7.58 -2.39 -0.02 2.57 16 15 N -0.72 -22.84 4.98 -447.93 -2.23 -25.07 16 16 C 0.53 17.31 6.96 85.10 0.59 17.90 16 17 O -0.56 -22.36 12.60 -4.53 -0.06 -22.42 16 18 C -0.22 -4.93 9.74 22.43 0.22 -4.71 16 19 C 0.01 0.18 9.89 23.79 0.24 0.42 16 20 C 0.03 0.78 5.99 40.69 0.24 1.02 16 21 C -0.27 -4.44 10.99 67.42 0.74 -3.70 16 22 S 0.22 3.45 22.96 -56.49 -1.30 2.15 16 23 C -0.03 -0.76 12.15 130.72 1.59 0.83 16 24 N -0.44 -13.21 6.88 -192.57 -1.33 -14.53 16 25 C -0.11 -4.36 5.95 31.69 0.19 -4.17 16 26 H 0.26 14.59 8.31 -92.71 -0.77 13.82 16 27 H 0.04 2.05 7.37 -2.39 -0.02 2.03 16 28 H 0.04 1.93 8.04 -2.39 -0.02 1.91 16 29 H 0.04 1.92 8.14 -2.39 -0.02 1.90 16 30 H 0.06 2.36 7.92 -2.38 -0.02 2.34 16 31 H 0.41 10.64 8.31 -92.71 -0.77 9.87 16 32 H 0.17 2.47 8.06 -2.91 -0.02 2.45 16 33 H 0.19 1.71 8.06 -2.91 -0.02 1.69 16 34 H 0.21 1.81 8.06 -2.91 -0.02 1.79 16 35 H 0.20 3.95 8.06 -2.91 -0.02 3.93 16 36 H 0.07 2.82 7.63 -2.38 -0.02 2.80 16 37 H 0.06 2.25 8.14 -2.39 -0.02 2.23 16 Total: -1.00 -74.67 323.65 2.67 -72.00 By element: Atomic # 1 Polarization: 16.98 SS G_CDS: 0.31 Total: 17.29 kcal Atomic # 6 Polarization: -26.01 SS G_CDS: 4.98 Total: -21.03 kcal Atomic # 7 Polarization: -90.58 SS G_CDS: -3.30 Total: -93.88 kcal Atomic # 8 Polarization: -22.36 SS G_CDS: -0.06 Total: -22.42 kcal Atomic # 14 Polarization: 43.85 SS G_CDS: 2.03 Total: 45.88 kcal Atomic # 16 Polarization: 3.45 SS G_CDS: -1.30 Total: 2.15 kcal Total: -74.67 2.67 -72.00 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000493161368.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 92.137 kcal (2) G-P(sol) polarization free energy of solvation -74.672 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 17.465 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.668 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.004 kcal (6) G-S(sol) free energy of system = (1) + (5) 20.133 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds