Wall clock time and date at job start Tue Mar 31 2020 06:38:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 N 1.29352 * 124.67766 * 2 1 4 4 C 1.30951 * 117.49358 * 179.72622 * 3 2 1 5 5 C 1.37069 * 113.85113 * 0.51482 * 4 3 2 6 6 C 1.41723 * 126.19284 * 179.78726 * 5 4 3 7 7 C 1.35564 * 119.99833 * 223.35116 * 6 5 4 8 8 C 1.41546 * 120.00187 * 10.46248 * 7 6 5 9 9 O 1.21780 * 119.99825 * 5.84982 * 8 7 6 10 10 N 1.34775 * 120.00016 * 185.84115 * 8 7 6 11 11 C 1.46505 * 119.99891 * 185.18511 * 10 8 7 12 12 C 1.52997 * 109.47196 * 175.11481 * 11 10 8 13 13 C 1.50705 * 115.54710 * 65.18862 * 12 11 10 14 14 H 1.08002 * 120.00275 * 271.45103 * 13 12 11 15 15 C 1.37882 * 119.99984 * 91.45003 * 13 12 11 16 16 N 1.31508 * 119.99616 * 3.95576 * 15 13 12 17 17 Si 1.86797 * 119.99995 * 183.95551 * 15 13 12 18 18 H 1.48496 * 109.47206 * 0.02562 * 17 15 13 19 19 H 1.48506 * 109.46887 * 119.99817 * 17 15 13 20 20 H 1.48496 * 109.47392 * 239.99806 * 17 15 13 21 21 C 1.52999 * 117.50318 * 279.52290 * 12 11 10 22 22 C 1.53000 * 117.50083 * 210.85831 * 12 11 10 23 23 S 1.70922 * 124.67182 * 180.02562 * 2 1 3 24 24 H 1.09000 * 109.47410 * 269.98505 * 1 2 3 25 25 H 1.08998 * 109.46855 * 29.98604 * 1 2 3 26 26 H 1.09003 * 109.47369 * 149.98142 * 1 2 3 27 27 H 1.08004 * 123.07692 * 180.30970 * 4 3 2 28 28 H 1.07997 * 119.99910 * 43.35190 * 6 5 4 29 29 H 1.07997 * 119.99797 * 190.74128 * 7 6 5 30 30 H 0.96992 * 120.00502 * 5.18938 * 10 8 7 31 31 H 1.08999 * 109.47220 * 295.11860 * 11 10 8 32 32 H 1.09003 * 109.47085 * 55.11878 * 11 10 8 33 33 H 0.97010 * 119.99845 * 185.00538 * 16 15 13 34 34 H 1.09006 * 117.49301 * 359.97438 * 21 12 11 35 35 H 1.08995 * 117.50265 * 145.02084 * 21 12 11 36 36 H 1.09003 * 117.49451 * 214.97902 * 22 12 11 37 37 H 1.08995 * 117.49785 * 359.97438 * 22 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2430 1.0637 0.0000 4 6 3.5422 0.9000 0.0056 5 6 3.9353 -0.4131 -0.0006 6 6 5.2711 -0.8867 -0.0010 7 6 5.6258 -1.9137 -0.8117 8 6 4.7325 -2.3671 -1.8118 9 8 3.6917 -1.7686 -2.0152 10 7 5.0340 -3.4611 -2.5389 11 6 4.1670 -3.8648 -3.6487 12 6 4.7936 -5.0544 -4.3788 13 6 4.9017 -6.3256 -3.5766 14 1 5.7765 -6.5089 -2.9704 15 6 3.8837 -7.2547 -3.6166 16 7 2.8546 -7.0686 -4.4139 17 14 3.9663 -8.7778 -2.5383 18 1 5.2173 -8.7508 -1.7386 19 1 2.7958 -8.8015 -1.6247 20 1 3.9512 -9.9915 -3.3938 21 6 5.9058 -4.7586 -5.3869 22 6 4.5206 -5.1864 -5.8784 23 16 2.4793 -1.4057 -0.0006 24 1 -0.3634 -0.0003 1.0276 25 1 -0.3633 0.8901 -0.5136 26 1 -0.3634 -0.8898 -0.5141 27 1 4.2402 1.7242 0.0109 28 1 6.0063 -0.4295 0.6445 29 1 6.5881 -2.3889 -0.6916 30 1 5.8250 -3.9811 -2.3276 31 1 3.1893 -4.1506 -3.2605 32 1 4.0531 -3.0318 -4.3424 33 1 2.1047 -7.6835 -4.3896 34 1 6.1908 -3.7162 -5.5303 35 1 6.7154 -5.4835 -5.4703 36 1 4.4197 -6.1928 -6.2849 37 1 3.8943 -4.4260 -6.3448 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000493373120.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:38:44 Heat of formation + Delta-G solvation = 57.080204 kcal Electronic energy + Delta-G solvation = -20545.103805 eV Core-core repulsion = 17415.916893 eV Total energy + Delta-G solvation = -3129.186912 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 292.099 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -39.72900 -39.06597 -36.82578 -34.25849 -33.33382 -31.96994 -31.32613 -28.21089 -26.33744 -25.29526 -23.89539 -22.33244 -21.12319 -19.97949 -19.59638 -18.89655 -17.48237 -16.73501 -16.21305 -15.32684 -15.01083 -14.75018 -14.60842 -14.48201 -13.89131 -13.64974 -13.35200 -13.01431 -12.83340 -12.62719 -12.38098 -12.11086 -11.90808 -11.59575 -11.37001 -11.05201 -10.95554 -10.55510 -10.29088 -10.19028 -9.58434 -9.44254 -9.28822 -9.12321 -8.62440 -8.44551 -8.23414 -7.99235 -7.79174 -6.11709 -4.21300 0.30571 1.58642 1.91599 2.16409 3.06838 3.21904 3.31235 3.32910 3.78127 3.99068 4.32433 4.38164 5.02068 5.15433 5.15922 5.19244 5.35909 5.44956 5.45349 5.55723 5.59534 5.86795 5.98593 6.17407 6.22415 6.32734 6.42918 6.47566 6.53085 6.69342 6.82535 7.11812 7.23293 7.36225 7.56555 7.76450 7.99659 8.23416 8.30187 8.78619 8.81570 9.46069 10.95569 Molecular weight = 292.10amu Principal moments of inertia in cm(-1) A = 0.018719 B = 0.004297 C = 0.004037 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1495.419814 B = 6514.279858 C = 6933.955323 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.075 4.075 2 C -0.003 4.003 3 N -0.489 5.489 4 C 0.060 3.940 5 C -0.229 4.229 6 C 0.004 3.996 7 C -0.204 4.204 8 C 0.519 3.481 9 O -0.548 6.548 10 N -0.693 5.693 11 C 0.164 3.836 12 C 0.018 3.982 13 C -0.497 4.497 14 H 0.060 0.940 15 C 0.073 3.927 16 N -0.875 5.875 17 Si 0.888 3.112 18 H -0.272 1.272 19 H -0.283 1.283 20 H -0.284 1.284 21 C -0.213 4.213 22 C -0.136 4.136 23 S 0.270 5.730 24 H 0.079 0.921 25 H 0.083 0.917 26 H 0.078 0.922 27 H 0.170 0.830 28 H 0.140 0.860 29 H 0.134 0.866 30 H 0.401 0.599 31 H 0.066 0.934 32 H 0.040 0.960 33 H 0.261 0.739 34 H 0.063 0.937 35 H 0.077 0.923 36 H 0.090 0.910 37 H 0.062 0.938 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.867 10.567 9.370 14.246 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C -0.274 4.274 3 N -0.205 5.205 4 C -0.098 4.098 5 C -0.351 4.351 6 C -0.019 4.019 7 C -0.228 4.228 8 C 0.308 3.692 9 O -0.431 6.431 10 N -0.340 5.340 11 C 0.040 3.960 12 C 0.017 3.983 13 C -0.535 4.535 14 H 0.078 0.922 15 C -0.131 4.131 16 N -0.511 5.511 17 Si 0.716 3.284 18 H -0.197 1.197 19 H -0.209 1.209 20 H -0.210 1.210 21 C -0.250 4.250 22 C -0.174 4.174 23 S 0.531 5.469 24 H 0.098 0.902 25 H 0.102 0.898 26 H 0.097 0.903 27 H 0.187 0.813 28 H 0.158 0.842 29 H 0.152 0.848 30 H 0.235 0.765 31 H 0.084 0.916 32 H 0.058 0.942 33 H 0.071 0.929 34 H 0.081 0.919 35 H 0.096 0.904 36 H 0.109 0.891 37 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges 0.367 10.228 9.073 13.677 hybrid contribution 1.160 -0.406 0.411 1.296 sum 1.527 9.822 9.484 13.738 Atomic orbital electron populations 1.20363 0.85968 1.03996 1.03152 1.27207 1.01887 0.92969 1.05378 1.65892 1.05099 1.31921 1.17567 1.22206 0.91003 0.94586 1.01989 1.23744 0.98798 0.97211 1.15396 1.20461 0.92141 0.93579 0.95680 1.22353 1.01922 1.00314 0.98242 1.17277 0.86529 0.81735 0.83678 1.90893 1.25626 1.57714 1.68891 1.46043 1.28938 1.26475 1.32572 1.21008 0.93566 0.94882 0.86505 1.19080 0.96550 0.93734 0.88891 1.20379 1.04703 1.00730 1.27679 0.92224 1.24980 0.95816 0.97586 0.94673 1.70020 1.07459 1.37856 1.35768 0.86604 0.78134 0.83141 0.80534 1.19704 1.20919 1.21012 1.23050 0.93206 0.98729 1.10007 1.22439 0.95524 1.00765 0.98656 1.83817 0.94976 1.09315 1.58776 0.90213 0.89804 0.90289 0.81334 0.84238 0.84800 0.76483 0.91597 0.94154 0.92929 0.91876 0.90411 0.89104 0.91973 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -0.83 10.46 36.01 0.38 -0.45 16 2 C 0.00 -0.04 7.37 -13.32 -0.10 -0.14 16 3 N -0.49 -7.72 10.50 -11.18 -0.12 -7.84 16 4 C 0.06 0.87 11.38 -18.35 -0.21 0.66 16 5 C -0.23 -3.34 4.71 -38.68 -0.18 -3.52 16 6 C 0.00 0.04 9.93 -39.21 -0.39 -0.34 16 7 C -0.20 -2.72 9.82 -39.28 -0.39 -3.11 16 8 C 0.52 9.14 7.13 -15.00 -0.11 9.04 16 9 O -0.55 -11.08 11.48 5.12 0.06 -11.02 16 10 N -0.69 -12.84 5.47 -63.24 -0.35 -13.19 16 11 C 0.16 3.58 5.51 -4.04 -0.02 3.56 16 12 C 0.02 0.42 1.59 -155.66 -0.25 0.17 16 13 C -0.50 -12.53 8.63 -34.44 -0.30 -12.83 16 14 H 0.06 1.48 7.82 -52.49 -0.41 1.07 16 15 C 0.07 1.91 5.41 -17.82 -0.10 1.81 16 16 N -0.87 -23.84 12.12 55.43 0.67 -23.17 16 17 Si 0.89 20.18 29.54 -169.99 -5.02 15.16 16 18 H -0.27 -6.06 7.11 56.52 0.40 -5.66 16 19 H -0.28 -6.47 7.11 56.52 0.40 -6.07 16 20 H -0.28 -6.49 7.11 56.52 0.40 -6.09 16 21 C -0.21 -4.41 9.96 -26.69 -0.27 -4.68 16 22 C -0.14 -3.11 8.90 -26.69 -0.24 -3.35 16 23 S 0.27 4.17 19.37 -107.50 -2.08 2.08 16 24 H 0.08 0.71 8.14 -51.93 -0.42 0.29 16 25 H 0.08 0.89 8.14 -51.93 -0.42 0.46 16 26 H 0.08 0.81 8.14 -51.93 -0.42 0.38 16 27 H 0.17 1.92 8.06 -52.48 -0.42 1.50 16 28 H 0.14 1.15 8.06 -52.49 -0.42 0.73 16 29 H 0.13 1.37 8.06 -52.49 -0.42 0.95 16 30 H 0.40 6.81 8.29 -40.82 -0.34 6.47 16 31 H 0.07 1.63 8.14 -51.93 -0.42 1.21 16 32 H 0.04 0.89 8.09 -51.93 -0.42 0.47 16 33 H 0.26 6.83 8.32 -40.82 -0.34 6.49 16 34 H 0.06 1.21 8.14 -51.93 -0.42 0.78 16 35 H 0.08 1.60 8.14 -51.93 -0.42 1.17 16 36 H 0.09 2.26 7.81 -51.93 -0.41 1.85 16 37 H 0.06 1.36 8.14 -51.93 -0.42 0.94 16 LS Contribution 332.08 15.07 5.00 5.00 Total: -1.00 -30.30 332.08 -8.93 -39.23 By element: Atomic # 1 Polarization: 11.86 SS G_CDS: -4.94 Total: 6.92 kcal Atomic # 6 Polarization: -11.02 SS G_CDS: -2.16 Total: -13.18 kcal Atomic # 7 Polarization: -44.40 SS G_CDS: 0.21 Total: -44.20 kcal Atomic # 8 Polarization: -11.08 SS G_CDS: 0.06 Total: -11.02 kcal Atomic # 14 Polarization: 20.18 SS G_CDS: -5.02 Total: 15.16 kcal Atomic # 16 Polarization: 4.17 SS G_CDS: -2.08 Total: 2.08 kcal Total LS contribution 5.00 Total: 5.00 kcal Total: -30.30 -8.93 -39.23 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000493373120.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 96.309 kcal (2) G-P(sol) polarization free energy of solvation -30.298 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 66.011 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.931 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.229 kcal (6) G-S(sol) free energy of system = (1) + (5) 57.080 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds