Wall clock time and date at job start Tue Mar 31 2020 06:38:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 N 1.29352 * 124.67766 * 2 1 4 4 C 1.30951 * 117.49358 * 179.72622 * 3 2 1 5 5 C 1.37069 * 113.85113 * 0.51482 * 4 3 2 6 6 C 1.41723 * 126.19284 * 179.78726 * 5 4 3 7 7 C 1.35564 * 119.99833 * 223.35116 * 6 5 4 8 8 C 1.41546 * 120.00187 * 10.46248 * 7 6 5 9 9 O 1.21780 * 119.99825 * 5.84982 * 8 7 6 10 10 N 1.34775 * 120.00016 * 185.84115 * 8 7 6 11 11 C 1.46505 * 119.99891 * 185.18511 * 10 8 7 12 12 C 1.52997 * 109.47196 * 175.11481 * 11 10 8 13 13 C 1.50705 * 115.54710 * 65.18862 * 12 11 10 14 14 H 1.08002 * 120.00275 * 271.45103 * 13 12 11 15 15 C 1.37882 * 119.99984 * 91.45003 * 13 12 11 16 16 N 1.31508 * 119.99616 * 3.95576 * 15 13 12 17 17 Si 1.86797 * 119.99995 * 183.95551 * 15 13 12 18 18 H 1.48496 * 109.47206 * 0.02562 * 17 15 13 19 19 H 1.48506 * 109.46887 * 119.99817 * 17 15 13 20 20 H 1.48496 * 109.47392 * 239.99806 * 17 15 13 21 21 C 1.52999 * 117.50318 * 279.52290 * 12 11 10 22 22 C 1.53000 * 117.50083 * 210.85831 * 12 11 10 23 23 S 1.70922 * 124.67182 * 180.02562 * 2 1 3 24 24 H 1.09000 * 109.47410 * 269.98505 * 1 2 3 25 25 H 1.08998 * 109.46855 * 29.98604 * 1 2 3 26 26 H 1.09003 * 109.47369 * 149.98142 * 1 2 3 27 27 H 1.08004 * 123.07692 * 180.30970 * 4 3 2 28 28 H 1.07997 * 119.99910 * 43.35190 * 6 5 4 29 29 H 1.07997 * 119.99797 * 190.74128 * 7 6 5 30 30 H 0.96992 * 120.00502 * 5.18938 * 10 8 7 31 31 H 1.08999 * 109.47220 * 295.11860 * 11 10 8 32 32 H 1.09003 * 109.47085 * 55.11878 * 11 10 8 33 33 H 0.97010 * 119.99845 * 185.00538 * 16 15 13 34 34 H 1.09006 * 117.49301 * 359.97438 * 21 12 11 35 35 H 1.08995 * 117.50265 * 145.02084 * 21 12 11 36 36 H 1.09003 * 117.49451 * 214.97902 * 22 12 11 37 37 H 1.08995 * 117.49785 * 359.97438 * 22 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2430 1.0637 0.0000 4 6 3.5422 0.9000 0.0056 5 6 3.9353 -0.4131 -0.0006 6 6 5.2711 -0.8867 -0.0010 7 6 5.6258 -1.9137 -0.8117 8 6 4.7325 -2.3671 -1.8118 9 8 3.6917 -1.7686 -2.0152 10 7 5.0340 -3.4611 -2.5389 11 6 4.1670 -3.8648 -3.6487 12 6 4.7936 -5.0544 -4.3788 13 6 4.9017 -6.3256 -3.5766 14 1 5.7765 -6.5089 -2.9704 15 6 3.8837 -7.2547 -3.6166 16 7 2.8546 -7.0686 -4.4139 17 14 3.9663 -8.7778 -2.5383 18 1 5.2173 -8.7508 -1.7386 19 1 2.7958 -8.8015 -1.6247 20 1 3.9512 -9.9915 -3.3938 21 6 5.9058 -4.7586 -5.3869 22 6 4.5206 -5.1864 -5.8784 23 16 2.4793 -1.4057 -0.0006 24 1 -0.3634 -0.0003 1.0276 25 1 -0.3633 0.8901 -0.5136 26 1 -0.3634 -0.8898 -0.5141 27 1 4.2402 1.7242 0.0109 28 1 6.0063 -0.4295 0.6445 29 1 6.5881 -2.3889 -0.6916 30 1 5.8250 -3.9811 -2.3276 31 1 3.1893 -4.1506 -3.2605 32 1 4.0531 -3.0318 -4.3424 33 1 2.1047 -7.6835 -4.3896 34 1 6.1908 -3.7162 -5.5303 35 1 6.7154 -5.4835 -5.4703 36 1 4.4197 -6.1928 -6.2849 37 1 3.8943 -4.4260 -6.3448 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000493373120.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:38:44 Heat of formation + Delta-G solvation = 38.436858 kcal Electronic energy + Delta-G solvation = -20545.912241 eV Core-core repulsion = 17415.916893 eV Total energy + Delta-G solvation = -3129.995348 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 292.099 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -41.02325 -40.27041 -38.55790 -35.43564 -34.81747 -33.92061 -32.33758 -29.44382 -27.95494 -27.06613 -25.00673 -23.57883 -22.87308 -21.38824 -21.07735 -20.24458 -18.71884 -18.01582 -17.89265 -16.74029 -16.67828 -16.22889 -15.93758 -15.77983 -15.46538 -14.79586 -14.55275 -14.39489 -14.22951 -13.81187 -13.67745 -13.42375 -13.35729 -13.02345 -12.91974 -12.84021 -12.48221 -12.32941 -12.02376 -11.47013 -11.29184 -10.99895 -10.71967 -10.50380 -10.39187 -10.06582 -9.93543 -9.15872 -9.09580 -8.09774 -6.23446 -0.78369 0.49772 0.81205 1.05331 1.41211 1.45136 1.53996 1.94259 2.42137 2.51782 2.59855 3.18469 3.37985 3.53841 4.02662 4.16483 4.20237 4.27246 4.42705 4.56199 4.61253 4.63264 4.63633 4.65763 4.74257 4.97292 4.99829 5.02269 5.16142 5.27637 5.29965 5.45424 5.58661 5.64372 5.73926 5.78527 6.36662 6.82249 6.86286 6.87192 7.42759 7.46559 8.97485 Molecular weight = 292.10amu Principal moments of inertia in cm(-1) A = 0.018719 B = 0.004297 C = 0.004037 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1495.419814 B = 6514.279858 C = 6933.955323 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.076 4.076 2 C -0.002 4.002 3 N -0.511 5.511 4 C 0.054 3.946 5 C -0.237 4.237 6 C 0.024 3.976 7 C -0.219 4.219 8 C 0.514 3.486 9 O -0.579 6.579 10 N -0.694 5.694 11 C 0.184 3.816 12 C 0.000 4.000 13 C -0.500 4.500 14 H 0.064 0.936 15 C 0.024 3.976 16 N -0.908 5.908 17 Si 0.947 3.053 18 H -0.260 1.260 19 H -0.287 1.287 20 H -0.286 1.286 21 C -0.179 4.179 22 C -0.149 4.149 23 S 0.219 5.781 24 H 0.103 0.897 25 H 0.089 0.911 26 H 0.083 0.917 27 H 0.199 0.801 28 H 0.190 0.810 29 H 0.170 0.830 30 H 0.409 0.591 31 H 0.025 0.975 32 H 0.034 0.966 33 H 0.258 0.742 34 H 0.086 0.914 35 H 0.083 0.917 36 H 0.065 0.935 37 H 0.066 0.934 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.800 11.561 10.858 16.309 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C -0.274 4.274 3 N -0.227 5.227 4 C -0.103 4.103 5 C -0.359 4.359 6 C 0.002 3.998 7 C -0.243 4.243 8 C 0.305 3.695 9 O -0.464 6.464 10 N -0.343 5.343 11 C 0.059 3.941 12 C -0.001 4.001 13 C -0.538 4.538 14 H 0.082 0.918 15 C -0.176 4.176 16 N -0.546 5.546 17 Si 0.773 3.227 18 H -0.184 1.184 19 H -0.213 1.213 20 H -0.212 1.212 21 C -0.216 4.216 22 C -0.188 4.188 23 S 0.480 5.520 24 H 0.121 0.879 25 H 0.108 0.892 26 H 0.102 0.898 27 H 0.215 0.785 28 H 0.206 0.794 29 H 0.188 0.812 30 H 0.245 0.755 31 H 0.044 0.956 32 H 0.053 0.947 33 H 0.067 0.933 34 H 0.104 0.896 35 H 0.102 0.898 36 H 0.084 0.916 37 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges 2.338 11.230 10.580 15.605 hybrid contribution 0.505 -0.606 -0.040 0.790 sum 2.843 10.624 10.540 15.233 Atomic orbital electron populations 1.20522 0.83859 1.04448 1.04811 1.27745 1.03243 0.92133 1.04246 1.65957 1.05996 1.32257 1.18515 1.22720 0.91063 0.95417 1.01109 1.24054 0.99364 0.96964 1.15549 1.20995 0.91630 0.92194 0.94992 1.22398 1.02634 1.01392 0.97866 1.18012 0.86631 0.80841 0.83982 1.90899 1.27196 1.58469 1.69825 1.45907 1.28827 1.27311 1.32216 1.20491 0.92311 0.94103 0.87196 1.19132 0.98426 0.93671 0.88868 1.20692 1.04489 1.01287 1.27350 0.91777 1.25689 0.95739 1.00291 0.95912 1.70144 1.08153 1.38951 1.37365 0.85674 0.78248 0.79820 0.78913 1.18425 1.21315 1.21233 1.23013 0.91932 1.00071 1.06626 1.22333 0.97835 0.99684 0.98914 1.83991 0.97018 1.11047 1.59938 0.87882 0.89246 0.89836 0.78464 0.79355 0.81246 0.75489 0.95619 0.94738 0.93281 0.89589 0.89821 0.91591 0.91588 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -1.64 10.46 71.24 0.74 -0.89 16 2 C 0.00 -0.05 7.37 88.47 0.65 0.60 16 3 N -0.51 -15.58 10.50 -189.29 -1.99 -17.57 16 4 C 0.05 1.44 11.38 84.55 0.96 2.41 16 5 C -0.24 -6.48 4.71 22.86 0.11 -6.38 16 6 C 0.02 0.49 9.93 22.51 0.22 0.72 16 7 C -0.22 -5.22 9.82 22.47 0.22 -5.00 16 8 C 0.51 17.63 7.13 85.06 0.61 18.24 16 9 O -0.58 -23.50 11.48 -4.60 -0.05 -23.56 16 10 N -0.69 -25.28 5.47 -472.18 -2.58 -27.86 16 11 C 0.18 8.16 5.51 86.38 0.48 8.64 16 12 C 0.00 -0.01 1.59 -52.93 -0.08 -0.10 16 13 C -0.50 -25.13 8.63 25.60 0.22 -24.91 16 14 H 0.06 3.10 7.82 -2.91 -0.02 3.07 16 15 C 0.02 1.26 5.41 84.66 0.46 1.72 16 16 N -0.91 -50.80 12.12 21.45 0.26 -50.54 16 17 Si 0.95 41.60 29.54 68.60 2.03 43.63 16 18 H -0.26 -10.81 7.11 99.48 0.71 -10.11 16 19 H -0.29 -12.68 7.11 99.48 0.71 -11.97 16 20 H -0.29 -12.57 7.11 99.48 0.71 -11.87 16 21 C -0.18 -7.17 9.96 30.62 0.30 -6.87 16 22 C -0.15 -6.92 8.90 30.62 0.27 -6.65 16 23 S 0.22 6.77 19.37 -56.49 -1.09 5.67 16 24 H 0.10 1.71 8.14 -2.39 -0.02 1.69 16 25 H 0.09 1.81 8.14 -2.39 -0.02 1.79 16 26 H 0.08 1.69 8.14 -2.39 -0.02 1.67 16 27 H 0.20 3.89 8.06 -2.91 -0.02 3.87 16 28 H 0.19 2.07 8.06 -2.91 -0.02 2.04 16 29 H 0.17 2.76 8.06 -2.91 -0.02 2.74 16 30 H 0.41 13.30 8.29 -92.71 -0.77 12.53 16 31 H 0.03 1.32 8.14 -2.39 -0.02 1.31 16 32 H 0.03 1.54 8.09 -2.39 -0.02 1.52 16 33 H 0.26 13.92 8.32 -92.70 -0.77 13.14 16 34 H 0.09 3.06 8.14 -2.38 -0.02 3.04 16 35 H 0.08 3.26 8.14 -2.39 -0.02 3.24 16 36 H 0.07 3.36 7.81 -2.39 -0.02 3.35 16 37 H 0.07 2.94 8.14 -2.39 -0.02 2.92 16 Total: -1.00 -66.76 332.08 2.05 -64.71 By element: Atomic # 1 Polarization: 23.66 SS G_CDS: 0.31 Total: 23.98 kcal Atomic # 6 Polarization: -23.64 SS G_CDS: 5.17 Total: -18.47 kcal Atomic # 7 Polarization: -91.65 SS G_CDS: -4.31 Total: -95.96 kcal Atomic # 8 Polarization: -23.50 SS G_CDS: -0.05 Total: -23.56 kcal Atomic # 14 Polarization: 41.60 SS G_CDS: 2.03 Total: 43.63 kcal Atomic # 16 Polarization: 6.77 SS G_CDS: -1.09 Total: 5.67 kcal Total: -66.76 2.05 -64.71 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000493373120.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 103.148 kcal (2) G-P(sol) polarization free energy of solvation -66.762 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 36.386 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.051 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.711 kcal (6) G-S(sol) free energy of system = (1) + (5) 38.437 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds