Wall clock time and date at job start Tue Mar 31 2020 06:38:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50704 * 1 3 3 N 1.29353 * 124.67371 * 2 1 4 4 C 1.30962 * 117.49361 * 179.74384 * 3 2 1 5 5 C 1.37069 * 113.84511 * 0.46034 * 4 3 2 6 6 C 1.41723 * 126.18812 * 179.85317 * 5 4 3 7 7 C 1.35570 * 119.99424 * 179.71084 * 6 5 4 8 8 C 1.41547 * 119.99427 * 179.97438 * 7 6 5 9 9 O 1.21779 * 120.00453 * 5.05523 * 8 7 6 10 10 N 1.34776 * 119.99868 * 185.05848 * 8 7 6 11 11 C 1.46502 * 120.00145 * 174.94198 * 10 8 7 12 12 C 1.52995 * 109.47106 * 184.97436 * 11 10 8 13 13 C 1.50700 * 115.55277 * 294.91916 * 12 11 10 14 14 H 1.08006 * 120.00121 * 95.17911 * 13 12 11 15 15 C 1.37875 * 120.00006 * 275.18230 * 13 12 11 16 16 N 1.31512 * 120.00069 * 5.10325 * 15 13 12 17 17 Si 1.86801 * 120.00288 * 185.10175 * 15 13 12 18 18 H 1.48509 * 109.46865 * 0.02562 * 17 15 13 19 19 H 1.48503 * 109.47155 * 119.99868 * 17 15 13 20 20 H 1.48495 * 109.47603 * 240.00388 * 17 15 13 21 21 C 1.53003 * 117.50032 * 149.24710 * 12 11 10 22 22 C 1.53001 * 117.49992 * 80.58618 * 12 11 10 23 23 S 1.70917 * 124.67478 * 180.02562 * 2 1 3 24 24 H 1.08996 * 109.47126 * 269.99685 * 1 2 3 25 25 H 1.09004 * 109.46712 * 29.99839 * 1 2 3 26 26 H 1.08996 * 109.46755 * 149.99657 * 1 2 3 27 27 H 1.07998 * 123.07555 * 180.30540 * 4 3 2 28 28 H 1.07997 * 120.00271 * 359.70398 * 6 5 4 29 29 H 1.07997 * 120.00258 * 359.97438 * 7 6 5 30 30 H 0.97006 * 119.99844 * 354.65964 * 10 8 7 31 31 H 1.08996 * 109.47110 * 304.97562 * 11 10 8 32 32 H 1.09003 * 109.46774 * 64.98048 * 11 10 8 33 33 H 0.96997 * 120.00359 * 184.99788 * 16 15 13 34 34 H 1.09000 * 117.49631 * 0.02562 * 21 12 11 35 35 H 1.09004 * 117.49947 * 145.01974 * 21 12 11 36 36 H 1.08999 * 117.50260 * 214.97677 * 22 12 11 37 37 H 1.08999 * 117.49686 * 359.97438 * 22 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2429 1.0638 0.0000 4 6 3.5423 0.9001 0.0052 5 6 3.9354 -0.4130 -0.0001 6 6 5.2711 -0.8866 0.0007 7 6 5.5176 -2.2197 0.0009 8 6 6.8517 -2.6927 0.0011 9 8 7.7767 -1.9061 0.0940 10 7 7.0983 -4.0137 -0.1016 11 6 8.4775 -4.4950 -0.2131 12 6 8.4729 -6.0080 -0.4398 13 6 7.9331 -6.8343 0.6990 14 1 6.8983 -7.1437 0.6986 15 6 8.7602 -7.1953 1.7414 16 7 9.9914 -6.7360 1.7934 17 14 8.1320 -8.3367 3.0801 18 1 6.7239 -8.7104 2.7914 19 1 8.9705 -9.5617 3.1198 20 1 8.2020 -7.6461 4.3928 21 6 9.6171 -6.6024 -1.2635 22 6 8.2112 -6.5085 -1.8617 23 16 2.4794 -1.4056 -0.0006 24 1 -0.3633 -0.0001 1.0276 25 1 -0.3633 0.8901 -0.5138 26 1 -0.3633 -0.8899 -0.5139 27 1 4.2401 1.7243 0.0105 28 1 6.0927 -0.1855 0.0009 29 1 4.6960 -2.9207 0.0009 30 1 6.3627 -4.6462 -0.0976 31 1 8.9671 -4.0031 -1.0535 32 1 9.0172 -4.2670 0.7061 33 1 10.5960 -7.0461 2.4856 34 1 10.3734 -5.9155 -1.6435 35 1 9.9792 -7.5913 -0.9819 36 1 7.6490 -7.4356 -1.9735 37 1 8.0419 -5.7598 -2.6356 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000493373121.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:38:46 Heat of formation + Delta-G solvation = 39.721455 kcal Electronic energy + Delta-G solvation = -19696.580582 eV Core-core repulsion = 16566.640938 eV Total energy + Delta-G solvation = -3129.939644 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 292.099 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -39.93513 -39.27836 -36.78536 -34.67895 -33.30888 -32.00240 -31.69577 -28.62136 -26.38389 -25.33369 -24.35244 -22.42811 -21.18542 -19.83337 -19.69247 -19.24652 -17.83861 -16.95326 -16.21716 -15.27125 -15.24589 -15.06598 -14.77783 -14.46171 -14.22617 -13.82143 -13.58802 -13.17120 -13.03743 -12.76836 -12.65397 -12.28875 -11.84895 -11.62230 -11.43426 -11.08854 -10.93981 -10.82380 -10.53845 -10.29403 -9.99104 -9.70860 -9.42440 -9.37720 -8.97191 -8.51995 -8.44755 -8.25955 -8.02060 -6.11295 -4.20339 -0.16992 1.01597 1.44429 1.66410 2.69415 3.23390 3.32763 3.34395 3.79960 3.84329 3.96421 4.33904 4.69257 4.89176 4.96793 5.05456 5.08241 5.10839 5.18002 5.31076 5.47747 5.60082 5.88847 5.98125 6.13869 6.23553 6.31788 6.45180 6.54655 6.67165 6.87040 7.07179 7.25508 7.40431 7.43562 7.45723 7.78418 8.25781 8.30647 8.80265 8.83860 9.47583 10.97124 Molecular weight = 292.10amu Principal moments of inertia in cm(-1) A = 0.020614 B = 0.003190 C = 0.003002 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1357.950075 B = 8776.378103 C = 9325.418767 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.079 4.079 2 C 0.032 3.968 3 N -0.476 5.476 4 C 0.067 3.933 5 C -0.210 4.210 6 C -0.003 4.003 7 C -0.189 4.189 8 C 0.535 3.465 9 O -0.562 6.562 10 N -0.695 5.695 11 C 0.161 3.839 12 C 0.027 3.973 13 C -0.500 4.500 14 H 0.061 0.939 15 C 0.073 3.927 16 N -0.873 5.873 17 Si 0.889 3.111 18 H -0.272 1.272 19 H -0.283 1.283 20 H -0.284 1.284 21 C -0.148 4.148 22 C -0.210 4.210 23 S 0.160 5.840 24 H 0.087 0.913 25 H 0.089 0.911 26 H 0.081 0.919 27 H 0.183 0.817 28 H 0.151 0.849 29 H 0.121 0.879 30 H 0.401 0.599 31 H 0.039 0.961 32 H 0.073 0.927 33 H 0.261 0.739 34 H 0.065 0.935 35 H 0.083 0.917 36 H 0.078 0.922 37 H 0.065 0.935 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.434 10.211 -4.286 19.817 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C -0.242 4.242 3 N -0.190 5.190 4 C -0.089 4.089 5 C -0.331 4.331 6 C -0.026 4.026 7 C -0.213 4.213 8 C 0.323 3.677 9 O -0.444 6.444 10 N -0.343 5.343 11 C 0.038 3.962 12 C 0.026 3.974 13 C -0.538 4.538 14 H 0.079 0.921 15 C -0.131 4.131 16 N -0.509 5.509 17 Si 0.716 3.284 18 H -0.197 1.197 19 H -0.209 1.209 20 H -0.210 1.210 21 C -0.186 4.186 22 C -0.247 4.247 23 S 0.418 5.582 24 H 0.105 0.895 25 H 0.108 0.892 26 H 0.100 0.900 27 H 0.200 0.800 28 H 0.169 0.831 29 H 0.139 0.861 30 H 0.236 0.764 31 H 0.058 0.942 32 H 0.091 0.909 33 H 0.071 0.929 34 H 0.083 0.917 35 H 0.102 0.898 36 H 0.097 0.903 37 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges -16.176 10.191 -4.095 19.552 hybrid contribution 0.179 -0.353 0.804 0.896 sum -15.997 9.839 -3.291 19.067 Atomic orbital electron populations 1.20468 0.85129 1.04300 1.03984 1.27254 1.02041 0.91364 1.03516 1.66002 1.05281 1.31524 1.16215 1.22598 0.90924 0.95231 1.00115 1.23992 0.97988 0.96677 1.14478 1.20523 0.92502 0.96288 0.93275 1.22266 0.97639 0.96065 1.05287 1.16909 0.89028 0.83264 0.78462 1.90800 1.46525 1.55684 1.51391 1.45963 1.11037 1.06139 1.71152 1.21026 0.80397 0.94271 1.00476 1.19044 0.99154 0.90170 0.89056 1.20401 0.96714 1.33326 1.03345 0.92130 1.24980 0.95165 0.95588 0.97345 1.70011 1.05609 1.41182 1.34087 0.86598 0.79091 0.80714 0.81962 1.19692 1.20935 1.21011 1.22491 0.89992 1.01886 1.04223 1.23020 1.01267 1.02037 0.98406 1.84034 0.96990 1.11149 1.66036 0.89465 0.89222 0.89979 0.79976 0.83148 0.86070 0.76421 0.94227 0.90857 0.92893 0.91665 0.89803 0.90331 0.91651 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.47 10.46 36.01 0.38 -0.09 16 2 C 0.03 0.31 7.37 -13.32 -0.10 0.21 16 3 N -0.48 -5.44 10.50 -11.18 -0.12 -5.56 16 4 C 0.07 0.73 11.38 -18.35 -0.21 0.53 16 5 C -0.21 -2.41 6.26 -38.68 -0.24 -2.65 16 6 C 0.00 -0.05 9.39 -39.20 -0.37 -0.41 16 7 C -0.19 -2.72 9.32 -39.27 -0.37 -3.09 16 8 C 0.53 10.01 7.55 -15.00 -0.11 9.90 16 9 O -0.56 -12.41 16.13 5.12 0.08 -12.32 16 10 N -0.70 -13.51 5.47 -63.24 -0.35 -13.86 16 11 C 0.16 3.66 5.51 -4.04 -0.02 3.64 16 12 C 0.03 0.62 1.39 -155.66 -0.22 0.40 16 13 C -0.50 -12.73 8.58 -34.44 -0.30 -13.02 16 14 H 0.06 1.51 7.82 -52.48 -0.41 1.10 16 15 C 0.07 1.93 5.40 -17.82 -0.10 1.84 16 16 N -0.87 -24.10 12.90 55.43 0.72 -23.38 16 17 Si 0.89 20.37 29.54 -169.99 -5.02 15.35 16 18 H -0.27 -6.10 7.11 56.52 0.40 -5.70 16 19 H -0.28 -6.50 7.11 56.52 0.40 -6.10 16 20 H -0.28 -6.59 7.11 56.52 0.40 -6.19 16 21 C -0.15 -3.34 9.41 -26.69 -0.25 -3.59 16 22 C -0.21 -4.31 9.96 -26.69 -0.27 -4.57 16 23 S 0.16 1.56 21.93 -107.50 -2.36 -0.80 16 24 H 0.09 0.42 8.14 -51.93 -0.42 0.00 16 25 H 0.09 0.49 8.14 -51.93 -0.42 0.07 16 26 H 0.08 0.34 8.14 -51.93 -0.42 -0.08 16 27 H 0.18 1.56 8.06 -52.49 -0.42 1.14 16 28 H 0.15 1.95 7.46 -52.49 -0.39 1.56 16 29 H 0.12 1.48 7.10 -52.49 -0.37 1.11 16 30 H 0.40 7.09 8.28 -40.82 -0.34 6.75 16 31 H 0.04 0.89 8.09 -51.93 -0.42 0.47 16 32 H 0.07 1.91 8.14 -51.93 -0.42 1.49 16 33 H 0.26 6.92 8.32 -40.82 -0.34 6.58 16 34 H 0.06 1.40 8.14 -51.93 -0.42 0.98 16 35 H 0.08 2.01 8.14 -51.93 -0.42 1.59 16 36 H 0.08 1.58 8.14 -51.93 -0.42 1.15 16 37 H 0.06 1.23 8.14 -51.93 -0.42 0.81 16 LS Contribution 340.03 15.07 5.12 5.12 Total: -1.00 -30.68 340.03 -8.96 -39.64 By element: Atomic # 1 Polarization: 11.61 SS G_CDS: -4.87 Total: 6.74 kcal Atomic # 6 Polarization: -8.76 SS G_CDS: -2.17 Total: -10.93 kcal Atomic # 7 Polarization: -43.06 SS G_CDS: 0.25 Total: -42.80 kcal Atomic # 8 Polarization: -12.41 SS G_CDS: 0.08 Total: -12.32 kcal Atomic # 14 Polarization: 20.37 SS G_CDS: -5.02 Total: 15.35 kcal Atomic # 16 Polarization: 1.56 SS G_CDS: -2.36 Total: -0.80 kcal Total LS contribution 5.12 Total: 5.12 kcal Total: -30.68 -8.96 -39.64 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000493373121.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 79.362 kcal (2) G-P(sol) polarization free energy of solvation -30.679 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 48.683 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.961 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.640 kcal (6) G-S(sol) free energy of system = (1) + (5) 39.721 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds