Wall clock time and date at job start Tue Mar 31 2020 06:26:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31515 * 1 3 3 Si 1.86794 * 120.00376 * 2 1 4 4 H 1.48499 * 109.47410 * 270.00470 * 3 2 1 5 5 H 1.48500 * 109.46769 * 30.00251 * 3 2 1 6 6 H 1.48494 * 109.47366 * 150.00445 * 3 2 1 7 7 C 1.37885 * 119.99792 * 180.02562 * 2 1 3 8 8 H 1.08002 * 119.99919 * 359.97438 * 7 2 1 9 9 C 1.50693 * 119.99793 * 179.97438 * 7 2 1 10 10 C 1.53049 * 109.45693 * 179.97438 * 9 7 2 11 11 C 1.53190 * 109.31213 * 181.37348 * 10 9 7 12 12 N 1.46929 * 108.77578 * 305.36524 * 11 10 9 13 13 C 1.34777 * 120.63403 * 233.58719 * 12 11 10 14 14 O 1.21780 * 119.99669 * 5.26376 * 13 12 11 15 15 C 1.41540 * 120.00390 * 185.27124 * 13 12 11 16 16 C 1.35560 * 120.00199 * 175.01797 * 15 13 12 17 17 C 1.41720 * 120.00087 * 180.27134 * 16 15 13 18 18 C 1.37071 * 126.18971 * 179.43962 * 17 16 15 19 19 N 1.30964 * 113.84699 * 179.85379 * 18 17 16 20 20 C 1.29361 * 117.48953 * 0.45475 * 19 18 17 21 21 S 1.70913 * 110.65088 * 359.74412 * 20 19 18 22 22 C 1.46930 * 118.73881 * 53.86013 * 12 11 10 23 23 C 1.53042 * 109.45342 * 300.06063 * 9 7 2 24 24 H 0.97000 * 119.99982 * 359.97438 * 1 2 3 25 25 H 1.09000 * 109.46407 * 60.02730 * 9 7 2 26 26 H 1.08996 * 109.49907 * 61.42348 * 10 9 7 27 27 H 1.09002 * 109.49653 * 301.32181 * 10 9 7 28 28 H 1.08994 * 109.58905 * 185.57883 * 11 10 9 29 29 H 1.09004 * 109.70924 * 65.21992 * 11 10 9 30 30 H 1.08001 * 120.00089 * 355.01721 * 15 13 12 31 31 H 1.08001 * 119.99716 * 0.02562 * 16 15 13 32 32 H 1.08000 * 123.08099 * 0.03956 * 18 17 16 33 33 H 1.07998 * 124.66782 * 179.76937 * 20 19 18 34 34 H 1.08999 * 109.58790 * 65.92942 * 22 12 11 35 35 H 1.09002 * 109.58834 * 186.35328 * 22 12 11 36 36 H 1.09007 * 109.49195 * 298.57657 * 23 9 7 37 37 H 1.08998 * 109.49534 * 58.66857 * 23 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6176 0.0000 4 1 2.4967 2.0464 -1.4000 5 1 1.4467 2.6525 0.7001 6 1 3.5468 1.4400 0.6999 7 6 2.0045 -1.1941 -0.0005 8 1 1.4645 -2.1294 -0.0005 9 6 3.5115 -1.1941 -0.0011 10 6 4.0213 -2.6372 -0.0010 11 6 5.5528 -2.6335 0.0331 12 7 6.0487 -1.8184 -1.0843 13 6 6.9423 -2.3223 -1.9583 14 8 7.2741 -3.4917 -1.8838 15 6 7.4954 -1.4924 -2.9627 16 6 8.4679 -1.9703 -3.7773 17 6 9.0257 -1.1375 -4.7792 18 6 10.0167 -1.4842 -5.6604 19 7 10.3480 -0.5253 -6.4886 20 6 9.7266 0.6035 -6.3745 21 16 8.5762 0.5334 -5.1124 22 6 5.5564 -0.4414 -1.2273 23 6 4.0207 -0.4710 -1.2501 24 1 -0.4850 0.8400 0.0004 25 1 3.8750 -0.6809 0.8891 26 1 3.6787 -3.1442 -0.9030 27 1 3.6391 -3.1580 0.8770 28 1 5.9230 -3.6538 -0.0665 29 1 5.8985 -2.2097 0.9760 30 1 7.1427 -0.4784 -3.0801 31 1 8.8203 -2.9845 -3.6601 32 1 10.4799 -2.4598 -5.6727 33 1 9.9092 1.4705 -6.9920 34 1 5.9002 0.1589 -0.3850 35 1 5.9290 -0.0150 -2.1587 36 1 3.6780 -0.9981 -2.1406 37 1 3.6380 0.5495 -1.2610 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000493450617.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:26:39 Heat of formation + Delta-G solvation = 33.970181 kcal Electronic energy + Delta-G solvation = -20473.539208 eV Core-core repulsion = 17343.350170 eV Total energy + Delta-G solvation = -3130.189038 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 292.099 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -40.19756 -39.82635 -37.26052 -34.69587 -33.60185 -31.66360 -30.79255 -29.58597 -26.90721 -25.97622 -23.71558 -22.74091 -21.99509 -20.67018 -19.83963 -18.58835 -17.97417 -17.42218 -16.74145 -15.96707 -15.42492 -15.09695 -14.81084 -14.58555 -14.35481 -13.84911 -13.74057 -13.50244 -13.24143 -12.77211 -12.68826 -12.35195 -12.10126 -11.90128 -11.51568 -11.19211 -11.05879 -10.77070 -10.28036 -10.22541 -10.09987 -9.80714 -9.63199 -9.55902 -9.34821 -9.12266 -8.64799 -8.60450 -8.16279 -6.12901 -4.12321 -0.33030 0.92260 1.32781 1.48046 2.55149 3.17036 3.26671 3.28207 3.34856 3.45553 3.96076 4.33271 4.54250 4.72878 4.79089 4.86645 5.14180 5.16683 5.34584 5.55587 5.59455 5.70922 5.75232 5.79853 5.90823 5.97793 6.04002 6.15390 6.26656 6.58576 6.61074 6.72758 6.87229 7.14325 7.27285 7.44151 7.65084 7.70360 8.33136 8.46754 8.91733 9.48765 11.00544 Molecular weight = 292.10amu Principal moments of inertia in cm(-1) A = 0.020862 B = 0.003923 C = 0.003418 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1341.827753 B = 7135.324670 C = 8190.037062 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.900 5.900 2 C 0.068 3.932 3 Si 0.886 3.114 4 H -0.278 1.278 5 H -0.297 1.297 6 H -0.265 1.265 7 C -0.513 4.513 8 H 0.074 0.926 9 C 0.015 3.985 10 C -0.113 4.113 11 C 0.108 3.892 12 N -0.595 5.595 13 C 0.547 3.453 14 O -0.557 6.557 15 C -0.202 4.202 16 C 0.007 3.993 17 C -0.213 4.213 18 C 0.067 3.933 19 N -0.473 5.473 20 C 0.010 3.990 21 S 0.164 5.836 22 C 0.099 3.901 23 C -0.135 4.135 24 H 0.264 0.736 25 H 0.028 0.972 26 H 0.059 0.941 27 H 0.069 0.931 28 H 0.085 0.915 29 H 0.063 0.937 30 H 0.128 0.872 31 H 0.152 0.848 32 H 0.184 0.816 33 H 0.201 0.799 34 H 0.066 0.934 35 H 0.074 0.926 36 H 0.066 0.934 37 H 0.059 0.941 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 19.046 2.619 -9.234 21.328 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.538 5.538 2 C -0.134 4.134 3 Si 0.716 3.284 4 H -0.205 1.205 5 H -0.224 1.224 6 H -0.190 1.190 7 C -0.551 4.551 8 H 0.092 0.908 9 C -0.004 4.004 10 C -0.151 4.151 11 C -0.014 4.014 12 N -0.327 5.327 13 C 0.339 3.661 14 O -0.439 6.439 15 C -0.226 4.226 16 C -0.015 4.015 17 C -0.334 4.334 18 C -0.090 4.090 19 N -0.185 5.185 20 C -0.284 4.284 21 S 0.420 5.580 22 C -0.024 4.024 23 C -0.173 4.173 24 H 0.074 0.926 25 H 0.046 0.954 26 H 0.078 0.922 27 H 0.087 0.913 28 H 0.103 0.897 29 H 0.081 0.919 30 H 0.146 0.854 31 H 0.169 0.831 32 H 0.201 0.799 33 H 0.218 0.782 34 H 0.085 0.915 35 H 0.093 0.907 36 H 0.085 0.915 37 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges 18.738 2.896 -9.234 21.089 hybrid contribution 0.573 0.432 -0.154 0.734 sum 19.311 3.327 -9.388 21.728 Atomic orbital electron populations 1.69899 1.06311 1.26951 1.50676 1.25056 0.94707 0.99061 0.94544 0.86870 0.80032 0.83696 0.77811 1.20526 1.22425 1.18968 1.21049 0.88711 0.94519 1.50838 0.90813 1.19133 0.96844 0.91730 0.92728 1.21825 0.91730 0.99524 1.02035 1.21789 0.96144 0.95840 0.87617 1.48070 1.41815 1.14642 1.28128 1.16853 0.79775 0.87430 0.82054 1.90795 1.62254 1.17044 1.73855 1.22336 1.00273 1.01174 0.98778 1.20557 0.92870 0.98598 0.89453 1.24044 1.05496 0.98308 1.05562 1.22698 0.95417 0.99695 0.91161 1.66064 1.27038 1.00162 1.25276 1.28620 0.97757 1.00217 1.01804 1.84182 1.36631 1.08000 1.29164 1.22115 0.97096 0.81839 1.01339 1.22471 0.91236 1.01181 1.02451 0.92633 0.95363 0.92228 0.91268 0.89682 0.91901 0.85426 0.83096 0.79869 0.78238 0.91536 0.90738 0.91498 0.92339 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -26.93 13.96 55.43 0.77 -26.15 16 2 C 0.07 1.89 5.45 -17.82 -0.10 1.79 16 3 Si 0.89 20.71 24.38 -169.99 -4.14 16.56 16 4 H -0.28 -6.24 6.85 56.52 0.39 -5.85 16 5 H -0.30 -7.06 7.11 56.52 0.40 -6.66 16 6 H -0.26 -5.79 6.53 56.52 0.37 -5.42 16 7 C -0.51 -13.86 9.14 -34.44 -0.31 -14.17 16 8 H 0.07 2.18 7.99 -52.49 -0.42 1.76 16 9 C 0.01 0.32 1.65 -91.73 -0.15 0.17 16 10 C -0.11 -2.17 5.30 -26.61 -0.14 -2.31 16 11 C 0.11 1.81 6.44 -3.71 -0.02 1.79 16 12 N -0.60 -9.81 2.97 -175.93 -0.52 -10.33 16 13 C 0.55 8.84 7.45 -15.00 -0.11 8.73 16 14 O -0.56 -10.41 15.54 5.12 0.08 -10.33 16 15 C -0.20 -2.58 8.70 -39.28 -0.34 -2.93 16 16 C 0.01 0.08 9.39 -39.21 -0.37 -0.29 16 17 C -0.21 -2.10 6.26 -38.68 -0.24 -2.34 16 18 C 0.07 0.62 11.38 -18.35 -0.21 0.42 16 19 N -0.47 -4.72 10.50 -15.06 -0.16 -4.88 16 20 C 0.01 0.08 12.20 51.72 0.63 0.71 16 21 S 0.16 1.36 21.97 -107.50 -2.36 -1.00 16 22 C 0.10 1.55 6.33 -3.49 -0.02 1.53 16 23 C -0.14 -2.67 4.86 -26.39 -0.13 -2.80 16 24 H 0.26 7.40 8.31 -40.82 -0.34 7.06 16 25 H 0.03 0.63 7.20 -51.93 -0.37 0.26 16 26 H 0.06 1.20 8.14 -51.93 -0.42 0.78 16 27 H 0.07 1.29 8.14 -51.93 -0.42 0.87 16 28 H 0.08 1.43 6.99 -51.93 -0.36 1.06 16 29 H 0.06 0.97 8.14 -51.93 -0.42 0.55 16 30 H 0.13 1.45 4.83 -52.49 -0.25 1.19 16 31 H 0.15 1.64 7.46 -52.49 -0.39 1.25 16 32 H 0.18 1.28 8.06 -52.49 -0.42 0.86 16 33 H 0.20 0.88 8.06 -52.49 -0.42 0.46 16 34 H 0.07 0.99 8.14 -51.93 -0.42 0.57 16 35 H 0.07 0.97 5.36 -51.93 -0.28 0.69 16 36 H 0.07 1.36 8.14 -51.93 -0.42 0.93 16 37 H 0.06 1.21 3.24 -51.93 -0.17 1.04 16 LS Contribution 312.57 15.07 4.71 4.71 Total: -1.00 -32.18 312.57 -7.53 -39.71 By element: Atomic # 1 Polarization: 5.80 SS G_CDS: -4.39 Total: 1.41 kcal Atomic # 6 Polarization: -8.19 SS G_CDS: -1.52 Total: -9.71 kcal Atomic # 7 Polarization: -41.45 SS G_CDS: 0.09 Total: -41.36 kcal Atomic # 8 Polarization: -10.41 SS G_CDS: 0.08 Total: -10.33 kcal Atomic # 14 Polarization: 20.71 SS G_CDS: -4.14 Total: 16.56 kcal Atomic # 16 Polarization: 1.36 SS G_CDS: -2.36 Total: -1.00 kcal Total LS contribution 4.71 Total: 4.71 kcal Total: -32.18 -7.53 -39.71 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000493450617.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 73.683 kcal (2) G-P(sol) polarization free energy of solvation -32.181 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 41.503 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.533 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.713 kcal (6) G-S(sol) free energy of system = (1) + (5) 33.970 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds