Wall clock time and date at job start Tue Mar 31 2020 06:26:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31515 * 1 3 3 Si 1.86794 * 120.00376 * 2 1 4 4 H 1.48499 * 109.47410 * 270.00470 * 3 2 1 5 5 H 1.48500 * 109.46769 * 30.00251 * 3 2 1 6 6 H 1.48494 * 109.47366 * 150.00445 * 3 2 1 7 7 C 1.37885 * 119.99792 * 180.02562 * 2 1 3 8 8 H 1.08002 * 119.99919 * 359.97438 * 7 2 1 9 9 C 1.50693 * 119.99793 * 179.97438 * 7 2 1 10 10 C 1.53049 * 109.45693 * 179.97438 * 9 7 2 11 11 C 1.53190 * 109.31213 * 181.37348 * 10 9 7 12 12 N 1.46929 * 108.77578 * 305.36524 * 11 10 9 13 13 C 1.34777 * 120.63403 * 233.58719 * 12 11 10 14 14 O 1.21780 * 119.99669 * 5.26376 * 13 12 11 15 15 C 1.41540 * 120.00390 * 185.27124 * 13 12 11 16 16 C 1.35560 * 120.00199 * 175.01797 * 15 13 12 17 17 C 1.41720 * 120.00087 * 180.27134 * 16 15 13 18 18 C 1.37071 * 126.18971 * 179.43962 * 17 16 15 19 19 N 1.30964 * 113.84699 * 179.85379 * 18 17 16 20 20 C 1.29361 * 117.48953 * 0.45475 * 19 18 17 21 21 S 1.70913 * 110.65088 * 359.74412 * 20 19 18 22 22 C 1.46930 * 118.73881 * 53.86013 * 12 11 10 23 23 C 1.53042 * 109.45342 * 300.06063 * 9 7 2 24 24 H 0.97000 * 119.99982 * 359.97438 * 1 2 3 25 25 H 1.09000 * 109.46407 * 60.02730 * 9 7 2 26 26 H 1.08996 * 109.49907 * 61.42348 * 10 9 7 27 27 H 1.09002 * 109.49653 * 301.32181 * 10 9 7 28 28 H 1.08994 * 109.58905 * 185.57883 * 11 10 9 29 29 H 1.09004 * 109.70924 * 65.21992 * 11 10 9 30 30 H 1.08001 * 120.00089 * 355.01721 * 15 13 12 31 31 H 1.08001 * 119.99716 * 0.02562 * 16 15 13 32 32 H 1.08000 * 123.08099 * 0.03956 * 18 17 16 33 33 H 1.07998 * 124.66782 * 179.76937 * 20 19 18 34 34 H 1.08999 * 109.58790 * 65.92942 * 22 12 11 35 35 H 1.09002 * 109.58834 * 186.35328 * 22 12 11 36 36 H 1.09007 * 109.49195 * 298.57657 * 23 9 7 37 37 H 1.08998 * 109.49534 * 58.66857 * 23 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6176 0.0000 4 1 2.4967 2.0464 -1.4000 5 1 1.4467 2.6525 0.7001 6 1 3.5468 1.4400 0.6999 7 6 2.0045 -1.1941 -0.0005 8 1 1.4645 -2.1294 -0.0005 9 6 3.5115 -1.1941 -0.0011 10 6 4.0213 -2.6372 -0.0010 11 6 5.5528 -2.6335 0.0331 12 7 6.0487 -1.8184 -1.0843 13 6 6.9423 -2.3223 -1.9583 14 8 7.2741 -3.4917 -1.8838 15 6 7.4954 -1.4924 -2.9627 16 6 8.4679 -1.9703 -3.7773 17 6 9.0257 -1.1375 -4.7792 18 6 10.0167 -1.4842 -5.6604 19 7 10.3480 -0.5253 -6.4886 20 6 9.7266 0.6035 -6.3745 21 16 8.5762 0.5334 -5.1124 22 6 5.5564 -0.4414 -1.2273 23 6 4.0207 -0.4710 -1.2501 24 1 -0.4850 0.8400 0.0004 25 1 3.8750 -0.6809 0.8891 26 1 3.6787 -3.1442 -0.9030 27 1 3.6391 -3.1580 0.8770 28 1 5.9230 -3.6538 -0.0665 29 1 5.8985 -2.2097 0.9760 30 1 7.1427 -0.4784 -3.0801 31 1 8.8203 -2.9845 -3.6601 32 1 10.4799 -2.4598 -5.6727 33 1 9.9092 1.4705 -6.9920 34 1 5.9002 0.1589 -0.3850 35 1 5.9290 -0.0150 -2.1587 36 1 3.6780 -0.9981 -2.1406 37 1 3.6380 0.5495 -1.2610 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000493450617.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:26:38 Heat of formation + Delta-G solvation = 12.572126 kcal Electronic energy + Delta-G solvation = -20474.467097 eV Core-core repulsion = 17343.350170 eV Total energy + Delta-G solvation = -3131.116927 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 292.099 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -41.37953 -40.57776 -38.69182 -35.60071 -35.33100 -33.45951 -32.19517 -30.49079 -28.37503 -26.97458 -24.99385 -24.23477 -23.26018 -21.38177 -21.23641 -19.78251 -18.95750 -18.75560 -18.37689 -17.10545 -16.58821 -16.30358 -16.23955 -15.51080 -15.24154 -15.07457 -14.95232 -14.82912 -14.50065 -14.29458 -14.19040 -13.73012 -13.52657 -13.17195 -12.79479 -12.31199 -12.25145 -12.09921 -11.99869 -11.82736 -11.49864 -11.24876 -11.01756 -10.94069 -10.67676 -10.60493 -10.19026 -9.69999 -9.26652 -8.27042 -6.32444 -1.07731 0.28661 0.64543 0.68731 1.32994 1.40919 1.51632 1.81454 2.08609 2.36334 2.37631 3.07808 3.37573 3.60852 3.80868 4.02705 4.05925 4.15053 4.22001 4.24263 4.33111 4.40027 4.44460 4.60620 4.73894 4.80195 4.95762 4.97235 5.02135 5.06216 5.16427 5.20899 5.41284 5.59081 5.68323 5.75019 6.32522 6.44116 6.62078 6.74712 7.12827 7.33097 8.90216 Molecular weight = 292.10amu Principal moments of inertia in cm(-1) A = 0.020862 B = 0.003923 C = 0.003418 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1341.827753 B = 7135.324670 C = 8190.037062 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.955 5.955 2 C 0.004 3.996 3 Si 0.952 3.048 4 H -0.258 1.258 5 H -0.304 1.304 6 H -0.233 1.233 7 C -0.522 4.522 8 H 0.024 0.976 9 C 0.014 3.986 10 C -0.107 4.107 11 C 0.116 3.884 12 N -0.603 5.603 13 C 0.548 3.452 14 O -0.593 6.593 15 C -0.233 4.233 16 C 0.041 3.959 17 C -0.247 4.247 18 C 0.079 3.921 19 N -0.504 5.504 20 C 0.025 3.975 21 S 0.187 5.813 22 C 0.105 3.895 23 C -0.133 4.133 24 H 0.265 0.735 25 H 0.035 0.965 26 H 0.039 0.961 27 H 0.065 0.935 28 H 0.082 0.918 29 H 0.083 0.917 30 H 0.144 0.856 31 H 0.148 0.852 32 H 0.200 0.800 33 H 0.234 0.766 34 H 0.086 0.914 35 H 0.108 0.892 36 H 0.052 0.948 37 H 0.055 0.945 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 22.387 4.970 -10.483 25.214 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.596 5.596 2 C -0.192 4.192 3 Si 0.778 3.222 4 H -0.184 1.184 5 H -0.232 1.232 6 H -0.156 1.156 7 C -0.560 4.560 8 H 0.043 0.957 9 C -0.005 4.005 10 C -0.145 4.145 11 C -0.006 4.006 12 N -0.334 5.334 13 C 0.342 3.658 14 O -0.478 6.478 15 C -0.256 4.256 16 C 0.018 3.982 17 C -0.368 4.368 18 C -0.078 4.078 19 N -0.217 5.217 20 C -0.267 4.267 21 S 0.444 5.556 22 C -0.017 4.017 23 C -0.172 4.172 24 H 0.074 0.926 25 H 0.053 0.947 26 H 0.057 0.943 27 H 0.084 0.916 28 H 0.101 0.899 29 H 0.101 0.899 30 H 0.161 0.839 31 H 0.166 0.834 32 H 0.217 0.783 33 H 0.250 0.750 34 H 0.104 0.896 35 H 0.126 0.874 36 H 0.070 0.930 37 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges 22.095 5.244 -10.483 25.012 hybrid contribution -0.449 -0.384 0.093 0.598 sum 21.646 4.860 -10.390 24.497 Atomic orbital electron populations 1.70083 1.08613 1.28101 1.52778 1.26047 0.95505 1.03612 0.94035 0.85792 0.79563 0.77713 0.79146 1.18358 1.23188 1.15638 1.21386 0.91721 0.92755 1.50162 0.95728 1.19094 0.93312 0.93759 0.94300 1.21704 0.94072 0.97787 1.00957 1.21635 0.93607 0.96385 0.88980 1.48124 1.42166 1.14945 1.28130 1.17301 0.79188 0.87254 0.82041 1.90773 1.63547 1.18637 1.74807 1.22115 1.02297 1.01676 0.99532 1.20590 0.90995 0.98390 0.88180 1.23991 1.06914 0.99538 1.06380 1.23060 0.94432 1.00268 0.90083 1.66169 1.28320 1.01045 1.26187 1.29289 0.96041 1.00415 1.00984 1.84115 1.36172 1.06543 1.28805 1.22140 0.93662 0.81789 1.04089 1.22315 0.94601 1.00091 1.00145 0.92646 0.94729 0.94255 0.91599 0.89921 0.89901 0.83867 0.83409 0.78316 0.75001 0.89550 0.87414 0.92952 0.92652 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.96 -59.37 13.96 21.45 0.30 -59.07 16 2 C 0.00 0.24 5.45 84.66 0.46 0.70 16 3 Si 0.95 41.89 24.38 68.60 1.67 43.56 16 4 H -0.26 -10.46 6.85 99.48 0.68 -9.78 16 5 H -0.30 -13.65 7.11 99.48 0.71 -12.95 16 6 H -0.23 -9.01 6.53 99.48 0.65 -8.36 16 7 C -0.52 -29.24 9.14 25.60 0.23 -29.01 16 8 H 0.02 1.55 7.99 -2.91 -0.02 1.53 16 9 C 0.01 0.62 1.65 -11.51 -0.02 0.60 16 10 C -0.11 -4.17 5.30 30.67 0.16 -4.01 16 11 C 0.12 3.77 6.44 86.36 0.56 4.32 16 12 N -0.60 -18.66 2.97 -828.72 -2.46 -21.12 16 13 C 0.55 16.87 7.45 85.06 0.63 17.50 16 14 O -0.59 -21.82 15.54 -4.60 -0.07 -21.89 16 15 C -0.23 -5.42 8.70 22.46 0.20 -5.22 16 16 C 0.04 0.82 9.39 22.51 0.21 1.03 16 17 C -0.25 -4.20 6.26 22.86 0.14 -4.05 16 18 C 0.08 1.26 11.38 84.55 0.96 2.23 16 19 N -0.50 -8.50 10.50 -201.54 -2.12 -10.61 16 20 C 0.03 0.30 12.20 130.61 1.59 1.89 16 21 S 0.19 2.45 21.97 -56.49 -1.24 1.21 16 22 C 0.11 2.95 6.33 86.50 0.55 3.49 16 23 C -0.13 -5.01 4.86 30.82 0.15 -4.86 16 24 H 0.26 15.38 8.31 -92.71 -0.77 14.61 16 25 H 0.03 1.48 7.20 -2.39 -0.02 1.46 16 26 H 0.04 1.65 8.14 -2.39 -0.02 1.63 16 27 H 0.07 2.55 8.14 -2.39 -0.02 2.53 16 28 H 0.08 2.74 6.99 -2.39 -0.02 2.72 16 29 H 0.08 2.37 8.14 -2.38 -0.02 2.35 16 30 H 0.14 2.75 4.83 -2.91 -0.01 2.74 16 31 H 0.15 3.02 7.46 -2.91 -0.02 2.99 16 32 H 0.20 2.30 8.06 -2.91 -0.02 2.27 16 33 H 0.23 0.97 8.06 -2.91 -0.02 0.95 16 34 H 0.09 2.14 8.14 -2.39 -0.02 2.12 16 35 H 0.11 2.33 5.36 -2.39 -0.01 2.32 16 36 H 0.05 2.09 8.14 -2.38 -0.02 2.07 16 37 H 0.06 2.12 3.24 -2.39 -0.01 2.11 16 Total: -1.00 -72.93 312.57 2.93 -70.00 By element: Atomic # 1 Polarization: 12.30 SS G_CDS: 1.01 Total: 13.31 kcal Atomic # 6 Polarization: -21.20 SS G_CDS: 5.83 Total: -15.37 kcal Atomic # 7 Polarization: -86.53 SS G_CDS: -4.27 Total: -90.81 kcal Atomic # 8 Polarization: -21.82 SS G_CDS: -0.07 Total: -21.89 kcal Atomic # 14 Polarization: 41.89 SS G_CDS: 1.67 Total: 43.56 kcal Atomic # 16 Polarization: 2.45 SS G_CDS: -1.24 Total: 1.21 kcal Total: -72.93 2.93 -70.00 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000493450617.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 82.573 kcal (2) G-P(sol) polarization free energy of solvation -72.927 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 9.645 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.927 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.001 kcal (6) G-S(sol) free energy of system = (1) + (5) 12.572 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds