Wall clock time and date at job start Tue Mar 31 2020 06:26:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31521 * 1 3 3 Si 1.86802 * 119.99950 * 2 1 4 4 H 1.48499 * 109.47258 * 270.00397 * 3 2 1 5 5 H 1.48504 * 109.46738 * 30.00052 * 3 2 1 6 6 H 1.48495 * 109.47326 * 149.99673 * 3 2 1 7 7 C 1.37875 * 119.99950 * 180.02562 * 2 1 3 8 8 H 1.07997 * 120.00122 * 0.02562 * 7 2 1 9 9 C 1.50705 * 119.99764 * 180.02562 * 7 2 1 10 10 C 1.53042 * 109.45754 * 180.02562 * 9 7 2 11 11 C 1.53189 * 109.30929 * 181.37107 * 10 9 7 12 12 N 1.46928 * 108.77636 * 305.36089 * 11 10 9 13 13 C 1.34775 * 120.63308 * 233.58418 * 12 11 10 14 14 O 1.21778 * 120.00229 * 5.92458 * 13 12 11 15 15 C 1.41545 * 119.99763 * 185.64547 * 13 12 11 16 16 C 1.35566 * 119.99934 * 151.83353 * 15 13 12 17 17 C 1.41724 * 119.99505 * 352.62337 * 16 15 13 18 18 C 1.37073 * 126.19290 * 131.47601 * 17 16 15 19 19 N 1.30947 * 113.85417 * 179.97438 * 18 17 16 20 20 C 1.29359 * 117.49002 * 359.97438 * 19 18 17 21 21 S 1.70917 * 110.65144 * 359.72738 * 20 19 18 22 22 C 1.46932 * 118.73632 * 53.86727 * 12 11 10 23 23 C 1.53035 * 109.44735 * 300.06015 * 9 7 2 24 24 H 0.96999 * 119.99925 * 359.97438 * 1 2 3 25 25 H 1.08995 * 109.45764 * 60.02538 * 9 7 2 26 26 H 1.09001 * 109.49770 * 61.42042 * 10 9 7 27 27 H 1.09001 * 109.49804 * 301.32235 * 10 9 7 28 28 H 1.09004 * 109.58876 * 185.57833 * 11 10 9 29 29 H 1.09000 * 109.70304 * 65.22191 * 11 10 9 30 30 H 1.08001 * 120.00778 * 331.83501 * 15 13 12 31 31 H 1.07993 * 120.00475 * 172.62205 * 16 15 13 32 32 H 1.08010 * 123.07035 * 0.02562 * 18 17 16 33 33 H 1.08004 * 124.67163 * 180.02562 * 20 19 18 34 34 H 1.09003 * 109.58634 * 65.92096 * 22 12 11 35 35 H 1.08996 * 109.58655 * 186.34877 * 22 12 11 36 36 H 1.09001 * 109.50141 * 298.57710 * 23 9 7 37 37 H 1.09002 * 109.50186 * 58.67247 * 23 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6178 0.0000 4 1 2.4966 2.0465 -1.4001 5 1 1.4466 2.6526 0.7001 6 1 3.5467 1.4403 0.7001 7 6 2.0046 -1.1940 -0.0005 8 1 1.4646 -2.1293 -0.0014 9 6 3.5116 -1.1940 0.0000 10 6 4.0215 -2.6370 -0.0014 11 6 5.5529 -2.6331 0.0338 12 7 6.0496 -1.8166 -1.0822 13 6 6.9440 -2.3194 -1.9561 14 8 7.2668 -3.4917 -1.8904 15 6 7.5037 -1.4861 -2.9540 16 6 8.7411 -1.7492 -3.4412 17 6 9.5369 -2.7594 -2.8456 18 6 10.2029 -3.7594 -3.5055 19 7 10.8682 -4.5639 -2.7150 20 6 10.8201 -4.3269 -1.4443 21 16 9.8570 -2.9519 -1.1235 22 6 5.5574 -0.4395 -1.2236 23 6 4.0216 -0.4703 -1.2482 24 1 -0.4850 0.8400 0.0004 25 1 3.8743 -0.6811 0.8908 26 1 3.6796 -3.1428 -0.9044 27 1 3.6387 -3.1589 0.8756 28 1 5.9234 -3.6534 -0.0668 29 1 5.8978 -2.2106 0.9776 30 1 6.9450 -0.6405 -3.3274 31 1 9.1204 -1.1892 -4.2831 32 1 10.1816 -3.8728 -4.5795 33 1 11.3235 -4.9140 -0.6903 34 1 5.9005 0.1597 -0.3802 35 1 5.9306 -0.0118 -2.1541 36 1 3.6797 -0.9968 -2.1393 37 1 3.6390 0.5503 -1.2590 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000493450618.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:26:40 Heat of formation + Delta-G solvation = 44.047938 kcal Electronic energy + Delta-G solvation = -21001.643306 eV Core-core repulsion = 17871.891272 eV Total energy + Delta-G solvation = -3129.752033 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 292.099 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -40.28621 -39.42171 -37.30049 -34.39175 -33.60748 -31.64646 -30.72686 -29.34784 -26.77999 -25.71280 -23.74422 -22.72358 -21.97191 -20.50023 -19.73153 -18.69210 -17.63557 -17.29182 -16.74328 -15.99595 -15.40253 -14.97739 -14.63518 -14.40224 -14.01778 -13.79369 -13.59736 -13.49855 -13.21753 -12.70479 -12.67615 -12.30845 -12.11358 -11.89726 -11.71531 -11.07430 -10.77955 -10.55149 -10.23338 -10.17076 -9.80876 -9.69642 -9.55924 -9.36310 -9.14305 -8.98171 -8.61202 -8.51904 -8.14419 -6.13363 -4.12901 0.15460 1.16831 1.52198 1.85994 2.79252 3.16625 3.27134 3.28148 3.30388 3.37642 4.29581 4.32698 4.70740 4.73356 5.09240 5.13970 5.18689 5.25854 5.39053 5.53428 5.59399 5.74388 5.79850 5.91641 5.94191 5.97554 6.13363 6.15486 6.26084 6.58033 6.60519 6.72221 6.86902 7.13919 7.43627 7.64812 7.65218 7.70019 8.33183 8.46254 8.91229 9.48252 11.00098 Molecular weight = 292.10amu Principal moments of inertia in cm(-1) A = 0.037007 B = 0.003877 C = 0.003738 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 756.437492 B = 7220.748362 C = 7489.507880 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.900 5.900 2 C 0.068 3.932 3 Si 0.886 3.114 4 H -0.278 1.278 5 H -0.297 1.297 6 H -0.265 1.265 7 C -0.514 4.514 8 H 0.073 0.927 9 C 0.015 3.985 10 C -0.113 4.113 11 C 0.109 3.891 12 N -0.595 5.595 13 C 0.534 3.466 14 O -0.541 6.541 15 C -0.192 4.192 16 C -0.008 4.008 17 C -0.197 4.197 18 C 0.055 3.945 19 N -0.474 5.474 20 C -0.003 4.003 21 S 0.184 5.816 22 C 0.100 3.900 23 C -0.136 4.136 24 H 0.264 0.736 25 H 0.028 0.972 26 H 0.058 0.942 27 H 0.068 0.932 28 H 0.084 0.916 29 H 0.062 0.938 30 H 0.143 0.857 31 H 0.146 0.854 32 H 0.176 0.824 33 H 0.194 0.806 34 H 0.065 0.935 35 H 0.075 0.925 36 H 0.066 0.934 37 H 0.058 0.942 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 20.559 -0.728 -4.197 20.995 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.539 5.539 2 C -0.134 4.134 3 Si 0.717 3.283 4 H -0.205 1.205 5 H -0.224 1.224 6 H -0.190 1.190 7 C -0.552 4.552 8 H 0.092 0.908 9 C -0.004 4.004 10 C -0.151 4.151 11 C -0.013 4.013 12 N -0.327 5.327 13 C 0.325 3.675 14 O -0.421 6.421 15 C -0.216 4.216 16 C -0.030 4.030 17 C -0.318 4.318 18 C -0.101 4.101 19 N -0.187 5.187 20 C -0.297 4.297 21 S 0.440 5.560 22 C -0.023 4.023 23 C -0.174 4.174 24 H 0.074 0.926 25 H 0.046 0.954 26 H 0.077 0.923 27 H 0.086 0.914 28 H 0.102 0.898 29 H 0.080 0.920 30 H 0.161 0.839 31 H 0.164 0.836 32 H 0.193 0.807 33 H 0.211 0.789 34 H 0.084 0.916 35 H 0.093 0.907 36 H 0.085 0.915 37 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges 20.645 -1.233 -3.308 20.945 hybrid contribution 0.001 0.984 -1.005 1.406 sum 20.646 -0.249 -4.313 21.094 Atomic orbital electron populations 1.69902 1.06317 1.26954 1.50678 1.25057 0.94706 0.99065 0.94541 0.86861 0.80002 0.83675 0.77794 1.20543 1.22443 1.18988 1.21053 0.88739 0.94512 1.50847 0.90848 1.19126 0.96820 0.91710 0.92741 1.21818 0.91793 0.99507 1.01964 1.21762 0.96090 0.95790 0.87697 1.48148 1.41806 1.14546 1.28181 1.17126 0.80202 0.88046 0.82136 1.90869 1.61691 1.16684 1.72854 1.22510 0.97282 1.01444 1.00338 1.20471 0.92506 0.93299 0.96720 1.23772 1.07569 1.04068 0.96433 1.22331 0.95820 0.91168 1.00794 1.65938 1.21366 1.28452 1.02953 1.28349 1.03675 1.01315 0.96352 1.83917 1.40989 1.25396 1.05652 1.22087 0.96986 0.81832 1.01353 1.22469 0.91348 1.01127 1.02408 0.92631 0.95388 0.92288 0.91375 0.89805 0.91998 0.83906 0.83613 0.80745 0.78914 0.91626 0.90655 0.91537 0.92396 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -26.92 13.96 55.43 0.77 -26.15 16 2 C 0.07 1.88 5.45 -17.82 -0.10 1.79 16 3 Si 0.89 20.66 24.38 -169.99 -4.14 16.52 16 4 H -0.28 -6.22 6.86 56.52 0.39 -5.84 16 5 H -0.30 -7.06 7.11 56.52 0.40 -6.65 16 6 H -0.26 -5.77 6.53 56.52 0.37 -5.40 16 7 C -0.51 -13.85 9.14 -34.44 -0.31 -14.16 16 8 H 0.07 2.17 7.99 -52.49 -0.42 1.76 16 9 C 0.01 0.33 1.66 -91.73 -0.15 0.17 16 10 C -0.11 -2.16 5.30 -26.61 -0.14 -2.30 16 11 C 0.11 1.79 6.44 -3.71 -0.02 1.77 16 12 N -0.59 -9.46 2.97 -175.93 -0.52 -9.98 16 13 C 0.53 8.27 6.34 -15.00 -0.10 8.17 16 14 O -0.54 -9.69 12.95 5.12 0.07 -9.63 16 15 C -0.19 -2.28 8.97 -39.28 -0.35 -2.63 16 16 C -0.01 -0.08 9.91 -39.21 -0.39 -0.47 16 17 C -0.20 -2.38 4.45 -38.67 -0.17 -2.55 16 18 C 0.05 0.66 11.38 -18.35 -0.21 0.46 16 19 N -0.47 -6.25 10.50 -15.05 -0.16 -6.41 16 20 C 0.00 -0.04 12.20 51.72 0.63 0.59 16 21 S 0.18 2.17 20.59 -107.50 -2.21 -0.05 16 22 C 0.10 1.53 6.33 -3.48 -0.02 1.50 16 23 C -0.14 -2.64 4.86 -26.39 -0.13 -2.76 16 24 H 0.26 7.40 8.31 -40.82 -0.34 7.06 16 25 H 0.03 0.62 7.20 -51.93 -0.37 0.25 16 26 H 0.06 1.20 8.14 -51.93 -0.42 0.77 16 27 H 0.07 1.28 8.14 -51.93 -0.42 0.85 16 28 H 0.08 1.39 6.99 -51.93 -0.36 1.03 16 29 H 0.06 0.94 8.14 -51.93 -0.42 0.52 16 30 H 0.14 1.37 6.17 -52.49 -0.32 1.05 16 31 H 0.15 0.96 8.06 -52.49 -0.42 0.54 16 32 H 0.18 1.68 8.06 -52.48 -0.42 1.25 16 33 H 0.19 1.55 8.06 -52.48 -0.42 1.12 16 34 H 0.07 0.96 8.14 -51.93 -0.42 0.53 16 35 H 0.08 0.92 5.49 -51.93 -0.29 0.64 16 36 H 0.07 1.33 8.14 -51.93 -0.42 0.91 16 37 H 0.06 1.19 3.24 -51.93 -0.17 1.02 16 LS Contribution 308.54 15.07 4.65 4.65 Total: -1.00 -32.56 308.54 -7.51 -40.07 By element: Atomic # 1 Polarization: 5.91 SS G_CDS: -4.50 Total: 1.41 kcal Atomic # 6 Polarization: -8.97 SS G_CDS: -1.46 Total: -10.43 kcal Atomic # 7 Polarization: -42.63 SS G_CDS: 0.09 Total: -42.54 kcal Atomic # 8 Polarization: -9.69 SS G_CDS: 0.07 Total: -9.63 kcal Atomic # 14 Polarization: 20.66 SS G_CDS: -4.14 Total: 16.52 kcal Atomic # 16 Polarization: 2.17 SS G_CDS: -2.21 Total: -0.05 kcal Total LS contribution 4.65 Total: 4.65 kcal Total: -32.56 -7.51 -40.07 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000493450618.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 84.115 kcal (2) G-P(sol) polarization free energy of solvation -32.557 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 51.558 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.510 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.067 kcal (6) G-S(sol) free energy of system = (1) + (5) 44.048 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds