Wall clock time and date at job start Tue Mar 31 2020 06:26:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31521 * 1 3 3 Si 1.86802 * 119.99950 * 2 1 4 4 H 1.48499 * 109.47258 * 270.00397 * 3 2 1 5 5 H 1.48504 * 109.46738 * 30.00052 * 3 2 1 6 6 H 1.48495 * 109.47326 * 149.99673 * 3 2 1 7 7 C 1.37875 * 119.99950 * 180.02562 * 2 1 3 8 8 H 1.07997 * 120.00122 * 0.02562 * 7 2 1 9 9 C 1.50705 * 119.99764 * 180.02562 * 7 2 1 10 10 C 1.53042 * 109.45754 * 180.02562 * 9 7 2 11 11 C 1.53189 * 109.30929 * 181.37107 * 10 9 7 12 12 N 1.46928 * 108.77636 * 305.36089 * 11 10 9 13 13 C 1.34775 * 120.63308 * 233.58418 * 12 11 10 14 14 O 1.21778 * 120.00229 * 5.92458 * 13 12 11 15 15 C 1.41545 * 119.99763 * 185.64547 * 13 12 11 16 16 C 1.35566 * 119.99934 * 151.83353 * 15 13 12 17 17 C 1.41724 * 119.99505 * 352.62337 * 16 15 13 18 18 C 1.37073 * 126.19290 * 131.47601 * 17 16 15 19 19 N 1.30947 * 113.85417 * 179.97438 * 18 17 16 20 20 C 1.29359 * 117.49002 * 359.97438 * 19 18 17 21 21 S 1.70917 * 110.65144 * 359.72738 * 20 19 18 22 22 C 1.46932 * 118.73632 * 53.86727 * 12 11 10 23 23 C 1.53035 * 109.44735 * 300.06015 * 9 7 2 24 24 H 0.96999 * 119.99925 * 359.97438 * 1 2 3 25 25 H 1.08995 * 109.45764 * 60.02538 * 9 7 2 26 26 H 1.09001 * 109.49770 * 61.42042 * 10 9 7 27 27 H 1.09001 * 109.49804 * 301.32235 * 10 9 7 28 28 H 1.09004 * 109.58876 * 185.57833 * 11 10 9 29 29 H 1.09000 * 109.70304 * 65.22191 * 11 10 9 30 30 H 1.08001 * 120.00778 * 331.83501 * 15 13 12 31 31 H 1.07993 * 120.00475 * 172.62205 * 16 15 13 32 32 H 1.08010 * 123.07035 * 0.02562 * 18 17 16 33 33 H 1.08004 * 124.67163 * 180.02562 * 20 19 18 34 34 H 1.09003 * 109.58634 * 65.92096 * 22 12 11 35 35 H 1.08996 * 109.58655 * 186.34877 * 22 12 11 36 36 H 1.09001 * 109.50141 * 298.57710 * 23 9 7 37 37 H 1.09002 * 109.50186 * 58.67247 * 23 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6178 0.0000 4 1 2.4966 2.0465 -1.4001 5 1 1.4466 2.6526 0.7001 6 1 3.5467 1.4403 0.7001 7 6 2.0046 -1.1940 -0.0005 8 1 1.4646 -2.1293 -0.0014 9 6 3.5116 -1.1940 0.0000 10 6 4.0215 -2.6370 -0.0014 11 6 5.5529 -2.6331 0.0338 12 7 6.0496 -1.8166 -1.0822 13 6 6.9440 -2.3194 -1.9561 14 8 7.2668 -3.4917 -1.8904 15 6 7.5037 -1.4861 -2.9540 16 6 8.7411 -1.7492 -3.4412 17 6 9.5369 -2.7594 -2.8456 18 6 10.2029 -3.7594 -3.5055 19 7 10.8682 -4.5639 -2.7150 20 6 10.8201 -4.3269 -1.4443 21 16 9.8570 -2.9519 -1.1235 22 6 5.5574 -0.4395 -1.2236 23 6 4.0216 -0.4703 -1.2482 24 1 -0.4850 0.8400 0.0004 25 1 3.8743 -0.6811 0.8908 26 1 3.6796 -3.1428 -0.9044 27 1 3.6387 -3.1589 0.8756 28 1 5.9234 -3.6534 -0.0668 29 1 5.8978 -2.2106 0.9776 30 1 6.9450 -0.6405 -3.3274 31 1 9.1204 -1.1892 -4.2831 32 1 10.1816 -3.8728 -4.5795 33 1 11.3235 -4.9140 -0.6903 34 1 5.9005 0.1597 -0.3802 35 1 5.9306 -0.0118 -2.1541 36 1 3.6797 -0.9968 -2.1393 37 1 3.6390 0.5503 -1.2590 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000493450618.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:26:40 Heat of formation + Delta-G solvation = 22.074160 kcal Electronic energy + Delta-G solvation = -21002.596160 eV Core-core repulsion = 17871.891272 eV Total energy + Delta-G solvation = -3130.704888 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 292.099 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -41.42888 -40.34944 -38.68597 -35.35574 -35.27242 -33.44282 -32.12411 -30.31285 -28.32555 -26.76256 -25.04799 -24.18448 -23.24953 -21.48195 -21.05242 -19.80535 -18.94340 -18.63122 -18.23432 -17.11399 -16.62055 -16.35396 -15.97666 -15.40841 -15.21172 -14.99660 -14.84417 -14.78041 -14.45041 -14.25388 -14.06714 -13.65557 -13.50112 -13.21121 -12.76779 -12.60466 -12.27419 -12.09411 -11.84013 -11.53480 -11.37038 -11.13905 -11.01318 -10.70157 -10.60864 -10.54501 -9.94385 -9.47688 -9.32351 -8.27335 -6.32961 -0.70527 0.32551 0.65692 0.99036 1.33038 1.41086 1.51884 1.88559 2.15747 2.29117 2.36250 3.07759 3.51990 3.72680 3.88160 4.11086 4.14690 4.24319 4.29103 4.34827 4.40097 4.45909 4.51448 4.68915 4.76366 4.82592 4.96327 5.05027 5.06241 5.12460 5.19067 5.31641 5.43264 5.61707 5.68401 5.76184 6.32155 6.50106 6.74358 6.77986 7.18822 7.32748 8.90017 Molecular weight = 292.10amu Principal moments of inertia in cm(-1) A = 0.037007 B = 0.003877 C = 0.003738 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 756.437492 B = 7220.748362 C = 7489.507880 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.956 5.956 2 C 0.004 3.996 3 Si 0.955 3.045 4 H -0.257 1.257 5 H -0.305 1.305 6 H -0.233 1.233 7 C -0.523 4.523 8 H 0.022 0.978 9 C 0.015 3.985 10 C -0.106 4.106 11 C 0.119 3.881 12 N -0.602 5.602 13 C 0.533 3.467 14 O -0.573 6.573 15 C -0.215 4.215 16 C 0.016 3.984 17 C -0.213 4.213 18 C 0.044 3.956 19 N -0.502 5.502 20 C -0.004 4.004 21 S 0.175 5.825 22 C 0.107 3.893 23 C -0.134 4.134 24 H 0.265 0.735 25 H 0.034 0.966 26 H 0.037 0.963 27 H 0.061 0.939 28 H 0.079 0.921 29 H 0.080 0.920 30 H 0.171 0.829 31 H 0.189 0.811 32 H 0.195 0.805 33 H 0.220 0.780 34 H 0.083 0.917 35 H 0.115 0.885 36 H 0.052 0.948 37 H 0.054 0.946 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 23.845 1.285 -5.132 24.425 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.597 5.597 2 C -0.192 4.192 3 Si 0.780 3.220 4 H -0.183 1.183 5 H -0.233 1.233 6 H -0.156 1.156 7 C -0.561 4.561 8 H 0.041 0.959 9 C -0.004 4.004 10 C -0.145 4.145 11 C -0.004 4.004 12 N -0.333 5.333 13 C 0.326 3.674 14 O -0.456 6.456 15 C -0.238 4.238 16 C -0.006 4.006 17 C -0.335 4.335 18 C -0.111 4.111 19 N -0.215 5.215 20 C -0.297 4.297 21 S 0.432 5.568 22 C -0.015 4.015 23 C -0.172 4.172 24 H 0.073 0.927 25 H 0.052 0.948 26 H 0.056 0.944 27 H 0.080 0.920 28 H 0.098 0.902 29 H 0.099 0.901 30 H 0.188 0.812 31 H 0.206 0.794 32 H 0.212 0.788 33 H 0.236 0.764 34 H 0.101 0.899 35 H 0.133 0.867 36 H 0.070 0.930 37 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges 23.961 0.768 -4.252 24.347 hybrid contribution -1.059 0.158 -0.695 1.276 sum 22.902 0.926 -4.947 23.449 Atomic orbital electron populations 1.70090 1.08664 1.28114 1.52803 1.26063 0.95506 1.03675 0.94003 0.85761 0.79503 0.77565 0.79157 1.18294 1.23306 1.15617 1.21402 0.91841 0.92688 1.50200 0.95924 1.19086 0.93193 0.93715 0.94427 1.21692 0.94335 0.97770 1.00678 1.21559 0.93345 0.96294 0.89187 1.48214 1.42235 1.14781 1.28112 1.17706 0.79587 0.88043 0.82113 1.90857 1.62732 1.18276 1.73701 1.22538 0.98339 1.02598 1.00369 1.20951 0.91418 0.91786 0.96434 1.24103 1.08105 1.04863 0.96431 1.22719 0.95524 0.91049 1.01817 1.65979 1.22434 1.29352 1.03760 1.28844 1.03173 1.01192 0.96497 1.83905 1.41130 1.25664 1.06137 1.22123 0.93307 0.81768 1.04332 1.22308 0.94966 0.99935 0.99954 0.92655 0.94839 0.94447 0.92004 0.90217 0.90143 0.81155 0.79391 0.78837 0.76375 0.89856 0.86717 0.92955 0.92792 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.96 -59.44 13.96 21.45 0.30 -59.14 16 2 C 0.00 0.21 5.45 84.65 0.46 0.67 16 3 Si 0.95 41.73 24.38 68.60 1.67 43.40 16 4 H -0.26 -10.34 6.86 99.48 0.68 -9.66 16 5 H -0.30 -13.66 7.11 99.48 0.71 -12.96 16 6 H -0.23 -8.92 6.53 99.48 0.65 -8.27 16 7 C -0.52 -29.26 9.14 25.60 0.23 -29.03 16 8 H 0.02 1.43 7.99 -2.91 -0.02 1.41 16 9 C 0.01 0.63 1.66 -11.51 -0.02 0.61 16 10 C -0.11 -4.12 5.30 30.67 0.16 -3.96 16 11 C 0.12 3.74 6.44 86.36 0.56 4.30 16 12 N -0.60 -17.46 2.97 -828.69 -2.46 -19.92 16 13 C 0.53 15.04 6.34 85.06 0.54 15.58 16 14 O -0.57 -19.66 12.95 -4.60 -0.06 -19.72 16 15 C -0.21 -4.22 8.97 22.47 0.20 -4.01 16 16 C 0.02 0.26 9.91 22.51 0.22 0.48 16 17 C -0.21 -4.57 4.45 22.86 0.10 -4.47 16 18 C 0.04 0.97 11.38 84.55 0.96 1.94 16 19 N -0.50 -12.42 10.50 -201.54 -2.12 -14.53 16 20 C 0.00 -0.08 12.20 130.61 1.59 1.51 16 21 S 0.17 3.78 20.59 -56.49 -1.16 2.61 16 22 C 0.11 2.80 6.33 86.51 0.55 3.35 16 23 C -0.13 -4.88 4.86 30.82 0.15 -4.73 16 24 H 0.26 15.38 8.31 -92.71 -0.77 14.60 16 25 H 0.03 1.42 7.20 -2.39 -0.02 1.40 16 26 H 0.04 1.57 8.14 -2.39 -0.02 1.55 16 27 H 0.06 2.40 8.14 -2.39 -0.02 2.38 16 28 H 0.08 2.59 6.99 -2.39 -0.02 2.58 16 29 H 0.08 2.25 8.14 -2.39 -0.02 2.23 16 30 H 0.17 2.32 6.17 -2.91 -0.02 2.30 16 31 H 0.19 1.41 8.06 -2.91 -0.02 1.39 16 32 H 0.19 3.23 8.06 -2.91 -0.02 3.21 16 33 H 0.22 3.09 8.06 -2.91 -0.02 3.07 16 34 H 0.08 1.96 8.14 -2.39 -0.02 1.94 16 35 H 0.11 2.15 5.49 -2.39 -0.01 2.14 16 36 H 0.05 2.03 8.14 -2.39 -0.02 2.01 16 37 H 0.05 2.02 3.24 -2.39 -0.01 2.01 16 Total: -1.00 -74.62 308.54 2.89 -71.73 By element: Atomic # 1 Polarization: 12.33 SS G_CDS: 1.00 Total: 13.33 kcal Atomic # 6 Polarization: -23.48 SS G_CDS: 5.71 Total: -17.76 kcal Atomic # 7 Polarization: -89.32 SS G_CDS: -4.27 Total: -93.59 kcal Atomic # 8 Polarization: -19.66 SS G_CDS: -0.06 Total: -19.72 kcal Atomic # 14 Polarization: 41.73 SS G_CDS: 1.67 Total: 43.40 kcal Atomic # 16 Polarization: 3.78 SS G_CDS: -1.16 Total: 2.61 kcal Total: -74.62 2.89 -71.73 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000493450618.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 93.805 kcal (2) G-P(sol) polarization free energy of solvation -74.624 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 19.180 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.894 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.730 kcal (6) G-S(sol) free energy of system = (1) + (5) 22.074 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds