Wall clock time and date at job start Tue Mar 31 2020 06:23:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31510 * 1 3 3 Si 1.86801 * 120.00431 * 2 1 4 4 H 1.48492 * 109.47181 * 240.00154 * 3 2 1 5 5 H 1.48497 * 109.46992 * 0.02562 * 3 2 1 6 6 H 1.48507 * 109.47154 * 120.00013 * 3 2 1 7 7 C 1.37885 * 119.99877 * 180.02562 * 2 1 3 8 8 H 1.07997 * 120.00400 * 179.97438 * 7 2 1 9 9 C 1.50692 * 119.99622 * 359.97438 * 7 2 1 10 10 C 1.53044 * 109.45972 * 179.97438 * 9 7 2 11 11 C 1.53197 * 109.31391 * 181.37093 * 10 9 7 12 12 N 1.46920 * 108.77511 * 305.36454 * 11 10 9 13 13 C 1.34779 * 120.63262 * 233.58178 * 12 11 10 14 14 O 1.21757 * 119.99815 * 355.01129 * 13 12 11 15 15 C 1.41713 * 120.00179 * 175.00644 * 13 12 11 16 16 C 1.35226 * 119.99930 * 197.10972 * 15 13 12 17 17 C 1.46718 * 119.99743 * 24.12827 * 16 15 13 18 18 C 1.36528 * 123.29425 * 186.12881 * 17 16 15 19 19 S 1.70941 * 108.70893 * 180.02562 * 18 17 16 20 20 C 1.70734 * 91.21629 * 359.97438 * 19 18 17 21 21 N 1.28610 * 110.81002 * 0.02562 * 20 19 18 22 22 C 1.46927 * 118.74008 * 53.86134 * 12 11 10 23 23 C 1.53043 * 109.45257 * 300.05943 * 9 7 2 24 24 H 0.97008 * 119.99664 * 359.97438 * 1 2 3 25 25 H 1.09004 * 109.46414 * 60.02968 * 9 7 2 26 26 H 1.09007 * 109.49574 * 61.42190 * 10 9 7 27 27 H 1.08994 * 109.49866 * 301.32304 * 10 9 7 28 28 H 1.09004 * 109.58541 * 185.57840 * 11 10 9 29 29 H 1.08998 * 109.70026 * 65.22569 * 11 10 9 30 30 H 1.08000 * 120.00017 * 17.11610 * 15 13 12 31 31 H 1.07996 * 119.99821 * 204.11859 * 16 15 13 32 32 H 1.07997 * 125.64263 * 0.02935 * 18 17 16 33 33 H 1.07998 * 124.59198 * 180.26383 * 20 19 18 34 34 H 1.09002 * 109.58320 * 65.92466 * 22 12 11 35 35 H 1.09002 * 109.58964 * 186.34795 * 22 12 11 36 36 H 1.08999 * 109.49609 * 298.57828 * 23 9 7 37 37 H 1.09003 * 109.49322 * 58.67403 * 23 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.1029 1.6963 -1.2124 5 1 1.2843 2.7464 0.0006 6 1 3.1030 1.6963 1.2125 7 6 2.0045 -1.1941 -0.0005 8 1 3.0845 -1.1942 -0.0010 9 6 1.2509 -2.4991 -0.0005 10 6 2.2456 -3.6622 -0.0018 11 6 1.4764 -4.9867 -0.0364 12 7 0.5231 -5.0092 1.0813 13 6 0.5129 -6.0357 1.9546 14 8 1.2350 -6.9986 1.7707 15 6 -0.3382 -5.9943 3.0869 16 6 -0.1163 -6.8254 4.1303 17 6 1.2262 -7.3703 4.3614 18 6 1.5009 -8.3063 5.3167 19 16 3.1698 -8.6720 5.2620 20 6 3.4068 -7.5685 3.9809 21 7 2.2999 -6.9990 3.6578 22 6 -0.4231 -3.8944 1.2254 23 6 0.3706 -2.5793 1.2488 24 1 -0.4850 0.8401 0.0004 25 1 0.6243 -2.5567 -0.8906 26 1 2.8563 -3.6197 0.9001 27 1 2.8873 -3.5912 -0.8800 28 1 2.1750 -5.8176 0.0623 29 1 0.9363 -5.0734 -0.9792 30 1 -1.1641 -5.2991 3.1165 31 1 -0.9272 -7.0879 4.7935 32 1 0.7827 -8.7433 5.9945 33 1 4.3568 -7.3777 3.5039 34 1 -1.1151 -3.8914 0.3833 35 1 -0.9783 -4.0044 2.1570 36 1 0.9986 -2.5467 2.1391 37 1 -0.3219 -1.7376 1.2604 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000493592554.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:23:54 Heat of formation + Delta-G solvation = 53.271464 kcal Electronic energy + Delta-G solvation = -21079.146962 eV Core-core repulsion = 17949.794891 eV Total energy + Delta-G solvation = -3129.352071 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 292.099 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -40.13230 -39.01516 -36.63540 -33.41836 -33.32518 -31.21792 -30.11419 -29.60606 -26.36954 -25.16985 -23.91424 -22.55174 -21.85859 -20.16916 -19.23461 -18.36575 -17.28984 -17.07036 -16.24540 -15.65584 -15.04982 -14.53273 -14.40152 -14.25768 -13.67326 -13.51250 -13.26513 -12.96159 -12.89127 -12.59451 -12.19877 -12.15552 -11.63114 -11.33435 -11.19600 -10.89839 -10.62753 -10.31221 -10.06327 -10.03703 -9.63971 -9.54150 -9.49568 -9.13600 -9.03542 -8.83260 -8.33323 -8.07668 -7.71996 -5.99564 -4.05473 0.44450 1.38566 1.44710 1.80094 3.25969 3.31757 3.36162 3.39449 3.74113 3.93959 4.28925 4.43609 4.92484 5.06420 5.18142 5.26296 5.29915 5.44598 5.78042 5.85809 6.00902 6.09854 6.18671 6.26487 6.26761 6.36164 6.39725 6.57270 6.76997 7.02378 7.14383 7.28341 7.37188 7.71261 7.84084 7.98258 8.08134 8.15850 8.45102 8.86675 8.97708 9.59158 11.05757 Molecular weight = 292.10amu Principal moments of inertia in cm(-1) A = 0.025356 B = 0.003753 C = 0.003606 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1104.016099 B = 7458.858513 C = 7762.625795 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.892 5.892 2 C 0.061 3.939 3 Si 0.890 3.110 4 H -0.278 1.278 5 H -0.288 1.288 6 H -0.278 1.278 7 C -0.511 4.511 8 H 0.054 0.946 9 C 0.049 3.951 10 C -0.121 4.121 11 C 0.117 3.883 12 N -0.600 5.600 13 C 0.543 3.457 14 O -0.528 6.528 15 C -0.178 4.178 16 C -0.024 4.024 17 C 0.084 3.916 18 C -0.281 4.281 19 S 0.146 5.854 20 C 0.004 3.996 21 N -0.391 5.391 22 C 0.103 3.897 23 C -0.122 4.122 24 H 0.260 0.740 25 H 0.026 0.974 26 H 0.051 0.949 27 H 0.057 0.943 28 H 0.076 0.924 29 H 0.054 0.946 30 H 0.140 0.860 31 H 0.142 0.858 32 H 0.176 0.824 33 H 0.194 0.806 34 H 0.060 0.940 35 H 0.066 0.934 36 H 0.038 0.962 37 H 0.102 0.898 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.212 -15.199 10.495 18.472 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.532 5.532 2 C -0.139 4.139 3 Si 0.718 3.282 4 H -0.203 1.203 5 H -0.213 1.213 6 H -0.204 1.204 7 C -0.550 4.550 8 H 0.072 0.928 9 C 0.031 3.969 10 C -0.159 4.159 11 C -0.005 4.005 12 N -0.333 5.333 13 C 0.333 3.667 14 O -0.407 6.407 15 C -0.201 4.201 16 C -0.047 4.047 17 C -0.048 4.048 18 C -0.422 4.422 19 S 0.401 5.599 20 C -0.297 4.297 21 N -0.103 5.103 22 C -0.020 4.020 23 C -0.160 4.160 24 H 0.070 0.930 25 H 0.044 0.956 26 H 0.070 0.930 27 H 0.075 0.925 28 H 0.094 0.906 29 H 0.072 0.928 30 H 0.158 0.842 31 H 0.160 0.840 32 H 0.193 0.807 33 H 0.211 0.789 34 H 0.078 0.922 35 H 0.085 0.915 36 H 0.057 0.943 37 H 0.120 0.880 Dipole moment (debyes) X Y Z Total from point charges 1.139 -15.825 10.464 19.006 hybrid contribution -0.538 1.472 -0.192 1.579 sum 0.600 -14.353 10.272 17.660 Atomic orbital electron populations 1.69833 1.05831 1.26474 1.51014 1.24952 0.94860 0.98978 0.95138 0.86688 0.79645 0.83247 0.78597 1.20326 1.21325 1.20369 1.21189 0.92903 0.90664 1.50195 0.92820 1.18621 0.92667 0.91687 0.93950 1.21981 0.98851 0.94374 1.00736 1.21574 0.91700 0.99423 0.87838 1.48142 1.35742 1.20934 1.28444 1.16950 0.82808 0.83137 0.83758 1.90748 1.41336 1.33048 1.75558 1.22432 1.03162 0.99428 0.95053 1.21639 0.91862 0.93709 0.97444 1.19695 0.94317 0.97117 0.93698 1.26762 1.01536 1.06052 1.07810 1.82653 1.01761 1.42115 1.33391 1.28517 1.01475 0.99482 1.00240 1.67283 0.97382 1.24467 1.21167 1.22136 0.91608 0.87859 1.00348 1.22072 0.99906 0.94545 0.99519 0.92987 0.95589 0.93004 0.92466 0.90552 0.92816 0.84227 0.84033 0.80677 0.78898 0.92215 0.91548 0.94281 0.88009 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -24.72 11.31 55.43 0.63 -24.10 16 2 C 0.06 1.67 5.30 -17.82 -0.09 1.58 16 3 Si 0.89 21.10 29.54 -169.99 -5.02 16.08 16 4 H -0.28 -6.54 7.11 56.52 0.40 -6.14 16 5 H -0.29 -6.75 7.11 56.52 0.40 -6.35 16 6 H -0.28 -6.57 7.11 56.52 0.40 -6.16 16 7 C -0.51 -13.90 8.56 -34.44 -0.29 -14.19 16 8 H 0.05 1.46 7.74 -52.49 -0.41 1.05 16 9 C 0.05 1.20 2.06 -91.73 -0.19 1.01 16 10 C -0.12 -2.60 5.30 -26.61 -0.14 -2.74 16 11 C 0.12 2.29 6.42 -3.71 -0.02 2.26 16 12 N -0.60 -11.47 2.97 -175.88 -0.52 -11.99 16 13 C 0.54 10.14 6.66 -14.93 -0.10 10.04 16 14 O -0.53 -11.01 12.44 5.14 0.06 -10.95 16 15 C -0.18 -2.66 9.06 -39.33 -0.36 -3.02 16 16 C -0.02 -0.32 9.92 -37.23 -0.37 -0.69 16 17 C 0.08 1.22 6.03 -84.27 -0.51 0.72 16 18 C -0.28 -3.15 10.99 30.12 0.33 -2.82 16 19 S 0.15 1.45 22.96 -107.50 -2.47 -1.01 16 20 C 0.00 0.05 12.16 51.41 0.62 0.67 16 21 N -0.39 -6.56 6.67 -12.22 -0.08 -6.65 16 22 C 0.10 1.91 6.36 -3.49 -0.02 1.89 16 23 C -0.12 -2.76 5.17 -26.39 -0.14 -2.90 16 24 H 0.26 6.93 8.31 -40.82 -0.34 6.59 16 25 H 0.03 0.68 8.14 -51.93 -0.42 0.26 16 26 H 0.05 1.16 8.14 -51.92 -0.42 0.74 16 27 H 0.06 1.18 8.14 -51.93 -0.42 0.76 16 28 H 0.08 1.50 7.03 -51.93 -0.37 1.13 16 29 H 0.05 1.00 8.14 -51.93 -0.42 0.58 16 30 H 0.14 1.74 5.96 -52.49 -0.31 1.43 16 31 H 0.14 1.23 8.06 -52.49 -0.42 0.81 16 32 H 0.18 1.40 8.06 -52.49 -0.42 0.98 16 33 H 0.19 2.08 8.06 -52.49 -0.42 1.66 16 34 H 0.06 1.09 8.14 -51.93 -0.42 0.67 16 35 H 0.07 1.05 5.36 -51.93 -0.28 0.77 16 36 H 0.04 0.92 8.14 -51.93 -0.42 0.49 16 37 H 0.10 2.54 6.03 -51.93 -0.31 2.23 16 LS Contribution 314.65 15.07 4.74 4.74 Total: -1.00 -32.02 314.65 -8.56 -40.57 By element: Atomic # 1 Polarization: 6.11 SS G_CDS: -4.62 Total: 1.49 kcal Atomic # 6 Polarization: -6.91 SS G_CDS: -1.28 Total: -8.19 kcal Atomic # 7 Polarization: -42.75 SS G_CDS: 0.02 Total: -42.73 kcal Atomic # 8 Polarization: -11.01 SS G_CDS: 0.06 Total: -10.95 kcal Atomic # 14 Polarization: 21.10 SS G_CDS: -5.02 Total: 16.08 kcal Atomic # 16 Polarization: 1.45 SS G_CDS: -2.47 Total: -1.01 kcal Total LS contribution 4.74 Total: 4.74 kcal Total: -32.02 -8.56 -40.57 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000493592554.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 93.842 kcal (2) G-P(sol) polarization free energy of solvation -32.015 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 61.827 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.555 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.571 kcal (6) G-S(sol) free energy of system = (1) + (5) 53.271 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds