Wall clock time and date at job start Tue Mar 31 2020 06:38:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.30996 * 1 3 3 C 1.50703 * 120.00035 * 2 1 4 4 N 1.46499 * 109.47238 * 124.99488 * 3 2 1 5 5 C 1.46502 * 119.99854 * 90.00575 * 4 3 2 6 6 C 1.50697 * 109.47422 * 89.99644 * 5 4 3 7 7 H 1.08004 * 120.00191 * 0.02562 * 6 5 4 8 8 C 1.37877 * 120.00219 * 180.02562 * 6 5 4 9 9 N 1.31516 * 119.99884 * 0.02562 * 8 6 5 10 10 Si 1.86799 * 120.00197 * 179.97438 * 8 6 5 11 11 H 1.48499 * 109.47135 * 359.97438 * 10 8 6 12 12 H 1.48497 * 109.47069 * 119.99932 * 10 8 6 13 13 H 1.48503 * 109.47332 * 240.00017 * 10 8 6 14 14 C 1.34774 * 120.00210 * 269.99795 * 4 3 2 15 15 O 1.21782 * 119.99882 * 179.97438 * 14 4 3 16 16 C 1.41542 * 119.99936 * 0.02562 * 14 4 3 17 17 C 1.35561 * 119.99780 * 186.59513 * 16 14 4 18 18 C 1.41720 * 120.00147 * 9.65675 * 17 16 14 19 19 C 1.37074 * 126.19340 * 224.46713 * 18 17 16 20 20 N 1.30952 * 113.84754 * 179.78823 * 19 18 17 21 21 C 1.29360 * 117.49242 * 0.51895 * 20 19 18 22 22 C 1.50709 * 124.67340 * 179.72863 * 21 20 19 23 23 S 1.70909 * 110.65359 * 359.71086 * 21 20 19 24 24 H 1.07994 * 120.00449 * 0.02562 * 1 2 3 25 25 H 1.08006 * 119.99781 * 180.02562 * 1 2 3 26 26 H 1.07994 * 120.00449 * 179.97438 * 2 1 3 27 27 H 1.09006 * 109.47114 * 4.99812 * 3 2 1 28 28 H 1.09003 * 109.47308 * 244.99969 * 3 2 1 29 29 H 1.08997 * 109.47261 * 210.00135 * 5 4 3 30 30 H 1.09004 * 109.46691 * 330.00006 * 5 4 3 31 31 H 0.96996 * 119.99735 * 180.02562 * 9 8 6 32 32 H 1.07999 * 120.00474 * 6.59663 * 16 14 4 33 33 H 1.08005 * 119.99967 * 189.65796 * 17 16 14 34 34 H 1.08002 * 123.07536 * 359.95640 * 19 18 17 35 35 H 1.09004 * 109.46902 * 269.98169 * 22 21 20 36 36 H 1.08994 * 109.46974 * 29.97697 * 22 21 20 37 37 H 1.08993 * 109.46848 * 149.97734 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0635 1.3051 0.0000 4 7 2.9937 1.3320 1.1315 5 6 4.3589 0.8258 0.9695 6 6 5.2615 1.9482 0.5260 7 1 4.8586 2.9395 0.3798 8 6 6.6016 1.7095 0.3069 9 7 7.0922 0.5022 0.4844 10 14 7.7203 3.1005 -0.2436 11 1 6.9293 4.3508 -0.3713 12 1 8.7975 3.2960 0.7597 13 1 8.3233 2.7605 -1.5574 14 6 2.5935 1.8225 2.3213 15 8 3.3667 1.8443 3.2620 16 6 1.2744 2.3111 2.4779 17 6 0.9116 2.9257 3.6304 18 6 1.8950 3.2627 4.5937 19 6 1.8015 3.0694 5.9476 20 7 2.8567 3.4672 6.6133 21 6 3.8280 3.9889 5.9366 22 6 5.1109 4.5043 6.5364 23 16 3.4560 4.0129 4.2687 24 1 -0.5400 0.9352 -0.0004 25 1 -0.5400 -0.9354 0.0004 26 1 1.8500 -0.9352 0.0004 27 1 1.3585 2.1317 0.0895 28 1 2.6213 1.4027 -0.9314 29 1 4.7141 0.4280 1.9201 30 1 4.3666 0.0353 0.2191 31 1 8.0350 0.3344 0.3306 32 1 0.5569 2.1943 1.6792 33 1 -0.1268 3.1586 3.8146 34 1 0.9378 2.6270 6.4216 35 1 4.9962 5.5585 6.7889 36 1 5.3436 3.9380 7.4382 37 1 5.9207 4.3892 5.8160 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000493771497.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:38:50 Heat of formation + Delta-G solvation = 63.841194 kcal Electronic energy + Delta-G solvation = -20951.155276 eV Core-core repulsion = 17822.261543 eV Total energy + Delta-G solvation = -3128.893733 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 292.099 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -39.64146 -38.92924 -35.93238 -34.12989 -33.13282 -32.08841 -31.14663 -28.33619 -27.07424 -25.60719 -24.07684 -23.25107 -21.35749 -20.01776 -19.43062 -18.23812 -17.12084 -16.84767 -16.46725 -15.41624 -14.99242 -14.71494 -14.56387 -14.25013 -13.81104 -13.60338 -13.16981 -13.04426 -12.98569 -12.54557 -12.31828 -12.24475 -11.89784 -11.61688 -11.18859 -11.15661 -11.12806 -10.87764 -10.59448 -10.24644 -9.91246 -9.68688 -9.36521 -9.17731 -8.94871 -8.46424 -8.24428 -7.76448 -7.44621 -6.06703 -4.11644 0.51092 1.78638 2.10782 2.37344 2.37869 3.24962 3.26528 3.34391 3.37809 4.02256 4.09708 4.43128 4.56851 5.06645 5.16475 5.21909 5.28322 5.31632 5.37387 5.60262 5.61726 5.62296 5.69873 5.74820 6.00149 6.03996 6.12911 6.29643 6.35079 6.62985 6.73159 6.85269 7.08777 7.43510 7.51713 7.89497 8.18364 8.20630 8.38556 8.87306 9.05697 9.53397 11.01140 Molecular weight = 292.10amu Principal moments of inertia in cm(-1) A = 0.010956 B = 0.007248 C = 0.004699 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2555.117816 B = 3861.951396 C = 5956.825201 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.155 4.155 3 C 0.133 3.867 4 N -0.585 5.585 5 C 0.245 3.755 6 C -0.523 4.523 7 H 0.058 0.942 8 C 0.062 3.938 9 N -0.894 5.894 10 Si 0.894 3.106 11 H -0.273 1.273 12 H -0.283 1.283 13 H -0.284 1.284 14 C 0.524 3.476 15 O -0.530 6.530 16 C -0.204 4.204 17 C -0.002 4.002 18 C -0.231 4.231 19 C 0.057 3.943 20 N -0.490 5.490 21 C -0.007 4.007 22 C -0.074 4.074 23 S 0.283 5.717 24 H 0.094 0.906 25 H 0.095 0.905 26 H 0.111 0.889 27 H 0.072 0.928 28 H 0.092 0.908 29 H 0.044 0.956 30 H 0.031 0.969 31 H 0.262 0.738 32 H 0.131 0.869 33 H 0.137 0.863 34 H 0.168 0.832 35 H 0.078 0.922 36 H 0.082 0.918 37 H 0.079 0.921 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.533 5.709 3.512 14.212 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.237 4.237 2 C -0.174 4.174 3 C 0.009 3.991 4 N -0.314 5.314 5 C 0.126 3.874 6 C -0.562 4.562 7 H 0.076 0.924 8 C -0.140 4.140 9 N -0.533 5.533 10 Si 0.722 3.278 11 H -0.197 1.197 12 H -0.209 1.209 13 H -0.210 1.210 14 C 0.314 3.686 15 O -0.411 6.411 16 C -0.228 4.228 17 C -0.024 4.024 18 C -0.353 4.353 19 C -0.101 4.101 20 N -0.206 5.206 21 C -0.278 4.278 22 C -0.134 4.134 23 S 0.545 5.455 24 H 0.112 0.888 25 H 0.113 0.887 26 H 0.129 0.871 27 H 0.090 0.910 28 H 0.110 0.890 29 H 0.062 0.938 30 H 0.049 0.951 31 H 0.072 0.928 32 H 0.148 0.852 33 H 0.155 0.845 34 H 0.185 0.815 35 H 0.096 0.904 36 H 0.101 0.899 37 H 0.098 0.902 Dipole moment (debyes) X Y Z Total from point charges -11.181 5.979 3.657 13.196 hybrid contribution -0.229 -0.124 -0.148 0.299 sum -11.410 5.855 3.510 13.297 Atomic orbital electron populations 1.23732 0.95677 1.01487 1.02795 1.23541 0.96096 0.99906 0.97873 1.20636 0.92469 0.94133 0.91868 1.48235 1.14387 1.59919 1.08895 1.19292 0.75305 0.94568 0.98236 1.21437 0.93330 0.95884 1.45536 0.92395 1.24923 0.97906 0.95695 0.95507 1.69942 1.14027 1.20149 1.49162 0.86501 0.80735 0.82326 0.78247 1.19713 1.20853 1.20966 1.17114 0.87545 0.80479 0.83472 1.90894 1.56394 1.55049 1.38776 1.22539 0.98372 1.02857 0.99049 1.20440 0.97129 0.93709 0.91108 1.23755 1.01007 1.12787 0.97779 1.22147 0.97475 1.01855 0.88641 1.65882 1.00932 1.14450 1.39372 1.27176 1.00320 1.04401 0.95912 1.20349 0.90569 1.00970 1.01529 1.83978 1.09980 1.46304 1.05232 0.88774 0.88702 0.87134 0.90971 0.88970 0.93762 0.95140 0.92783 0.85158 0.84541 0.81532 0.90380 0.89910 0.90229 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.20 -2.24 13.97 29.02 0.41 -1.84 16 2 C -0.15 -2.17 9.84 -36.02 -0.35 -2.52 16 3 C 0.13 2.11 5.49 -5.19 -0.03 2.08 16 4 N -0.58 -12.08 2.44 -179.87 -0.44 -12.52 16 5 C 0.25 6.26 5.16 -5.19 -0.03 6.23 16 6 C -0.52 -14.36 9.39 -34.44 -0.32 -14.68 16 7 H 0.06 1.59 7.81 -52.48 -0.41 1.18 16 8 C 0.06 1.72 5.46 -17.82 -0.10 1.63 16 9 N -0.89 -26.16 13.29 55.43 0.74 -25.42 16 10 Si 0.89 21.35 29.54 -169.99 -5.02 16.33 16 11 H -0.27 -6.37 7.11 56.52 0.40 -5.97 16 12 H -0.28 -6.74 7.11 56.52 0.40 -6.34 16 13 H -0.28 -6.65 7.11 56.52 0.40 -6.24 16 14 C 0.52 10.67 7.02 -15.00 -0.11 10.56 16 15 O -0.53 -12.56 11.10 5.12 0.06 -12.50 16 16 C -0.20 -3.15 9.02 -39.28 -0.35 -3.51 16 17 C 0.00 -0.02 9.93 -39.21 -0.39 -0.41 16 18 C -0.23 -3.83 4.67 -38.68 -0.18 -4.01 16 19 C 0.06 0.93 11.38 -18.35 -0.21 0.72 16 20 N -0.49 -8.70 10.50 -11.18 -0.12 -8.82 16 21 C -0.01 -0.11 7.37 -13.31 -0.10 -0.21 16 22 C -0.07 -0.99 10.46 36.01 0.38 -0.61 16 23 S 0.28 5.10 19.44 -107.50 -2.09 3.01 16 24 H 0.09 0.90 7.73 -52.49 -0.41 0.50 16 25 H 0.09 0.95 8.06 -52.48 -0.42 0.53 16 26 H 0.11 1.66 8.06 -52.49 -0.42 1.23 16 27 H 0.07 0.96 5.83 -51.93 -0.30 0.66 16 28 H 0.09 1.52 8.07 -51.93 -0.42 1.10 16 29 H 0.04 1.29 7.42 -51.93 -0.39 0.90 16 30 H 0.03 0.79 8.07 -51.93 -0.42 0.37 16 31 H 0.26 7.26 8.31 -40.82 -0.34 6.92 16 32 H 0.13 1.61 5.74 -52.49 -0.30 1.31 16 33 H 0.14 1.34 8.06 -52.48 -0.42 0.92 16 34 H 0.17 2.18 8.06 -52.49 -0.42 1.76 16 35 H 0.08 0.84 8.14 -51.93 -0.42 0.42 16 36 H 0.08 1.05 8.14 -51.93 -0.42 0.63 16 37 H 0.08 1.03 8.14 -51.93 -0.42 0.60 16 LS Contribution 332.42 15.07 5.01 5.01 Total: -1.00 -33.03 332.42 -7.99 -41.01 By element: Atomic # 1 Polarization: 5.21 SS G_CDS: -4.74 Total: 0.47 kcal Atomic # 6 Polarization: -5.18 SS G_CDS: -1.38 Total: -6.56 kcal Atomic # 7 Polarization: -46.95 SS G_CDS: 0.18 Total: -46.77 kcal Atomic # 8 Polarization: -12.56 SS G_CDS: 0.06 Total: -12.50 kcal Atomic # 14 Polarization: 21.35 SS G_CDS: -5.02 Total: 16.33 kcal Atomic # 16 Polarization: 5.10 SS G_CDS: -2.09 Total: 3.01 kcal Total LS contribution 5.01 Total: 5.01 kcal Total: -33.03 -7.99 -41.01 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000493771497.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 104.856 kcal (2) G-P(sol) polarization free energy of solvation -33.027 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 71.829 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.988 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.014 kcal (6) G-S(sol) free energy of system = (1) + (5) 63.841 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds