Wall clock time and date at job start Tue Mar 31 2020 06:38:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.30996 * 1 3 3 C 1.50703 * 120.00035 * 2 1 4 4 N 1.46499 * 109.47238 * 124.99488 * 3 2 1 5 5 C 1.46502 * 119.99854 * 90.00575 * 4 3 2 6 6 C 1.50697 * 109.47422 * 89.99644 * 5 4 3 7 7 H 1.08004 * 120.00191 * 0.02562 * 6 5 4 8 8 C 1.37877 * 120.00219 * 180.02562 * 6 5 4 9 9 N 1.31516 * 119.99884 * 0.02562 * 8 6 5 10 10 Si 1.86799 * 120.00197 * 179.97438 * 8 6 5 11 11 H 1.48499 * 109.47135 * 359.97438 * 10 8 6 12 12 H 1.48497 * 109.47069 * 119.99932 * 10 8 6 13 13 H 1.48503 * 109.47332 * 240.00017 * 10 8 6 14 14 C 1.34774 * 120.00210 * 269.99795 * 4 3 2 15 15 O 1.21782 * 119.99882 * 179.97438 * 14 4 3 16 16 C 1.41542 * 119.99936 * 0.02562 * 14 4 3 17 17 C 1.35561 * 119.99780 * 186.59513 * 16 14 4 18 18 C 1.41720 * 120.00147 * 9.65675 * 17 16 14 19 19 C 1.37074 * 126.19340 * 224.46713 * 18 17 16 20 20 N 1.30952 * 113.84754 * 179.78823 * 19 18 17 21 21 C 1.29360 * 117.49242 * 0.51895 * 20 19 18 22 22 C 1.50709 * 124.67340 * 179.72863 * 21 20 19 23 23 S 1.70909 * 110.65359 * 359.71086 * 21 20 19 24 24 H 1.07994 * 120.00449 * 0.02562 * 1 2 3 25 25 H 1.08006 * 119.99781 * 180.02562 * 1 2 3 26 26 H 1.07994 * 120.00449 * 179.97438 * 2 1 3 27 27 H 1.09006 * 109.47114 * 4.99812 * 3 2 1 28 28 H 1.09003 * 109.47308 * 244.99969 * 3 2 1 29 29 H 1.08997 * 109.47261 * 210.00135 * 5 4 3 30 30 H 1.09004 * 109.46691 * 330.00006 * 5 4 3 31 31 H 0.96996 * 119.99735 * 180.02562 * 9 8 6 32 32 H 1.07999 * 120.00474 * 6.59663 * 16 14 4 33 33 H 1.08005 * 119.99967 * 189.65796 * 17 16 14 34 34 H 1.08002 * 123.07536 * 359.95640 * 19 18 17 35 35 H 1.09004 * 109.46902 * 269.98169 * 22 21 20 36 36 H 1.08994 * 109.46974 * 29.97697 * 22 21 20 37 37 H 1.08993 * 109.46848 * 149.97734 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0635 1.3051 0.0000 4 7 2.9937 1.3320 1.1315 5 6 4.3589 0.8258 0.9695 6 6 5.2615 1.9482 0.5260 7 1 4.8586 2.9395 0.3798 8 6 6.6016 1.7095 0.3069 9 7 7.0922 0.5022 0.4844 10 14 7.7203 3.1005 -0.2436 11 1 6.9293 4.3508 -0.3713 12 1 8.7975 3.2960 0.7597 13 1 8.3233 2.7605 -1.5574 14 6 2.5935 1.8225 2.3213 15 8 3.3667 1.8443 3.2620 16 6 1.2744 2.3111 2.4779 17 6 0.9116 2.9257 3.6304 18 6 1.8950 3.2627 4.5937 19 6 1.8015 3.0694 5.9476 20 7 2.8567 3.4672 6.6133 21 6 3.8280 3.9889 5.9366 22 6 5.1109 4.5043 6.5364 23 16 3.4560 4.0129 4.2687 24 1 -0.5400 0.9352 -0.0004 25 1 -0.5400 -0.9354 0.0004 26 1 1.8500 -0.9352 0.0004 27 1 1.3585 2.1317 0.0895 28 1 2.6213 1.4027 -0.9314 29 1 4.7141 0.4280 1.9201 30 1 4.3666 0.0353 0.2191 31 1 8.0350 0.3344 0.3306 32 1 0.5569 2.1943 1.6792 33 1 -0.1268 3.1586 3.8146 34 1 0.9378 2.6270 6.4216 35 1 4.9962 5.5585 6.7889 36 1 5.3436 3.9380 7.4382 37 1 5.9207 4.3892 5.8160 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000493771497.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:38:49 Heat of formation + Delta-G solvation = 43.215935 kcal Electronic energy + Delta-G solvation = -20952.049655 eV Core-core repulsion = 17822.261543 eV Total energy + Delta-G solvation = -3129.788112 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 292.099 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -41.09541 -40.25965 -37.36995 -35.50340 -34.89656 -33.62148 -32.34756 -30.00294 -28.57021 -26.93173 -25.67373 -24.72450 -22.88298 -21.15524 -20.67212 -19.61757 -18.62364 -18.42048 -18.17895 -17.05670 -16.39525 -16.24991 -15.88660 -15.72588 -15.12905 -14.86352 -14.49320 -14.32343 -14.28777 -14.16892 -13.72944 -13.44293 -13.38010 -13.07816 -12.91202 -12.75809 -12.49434 -12.39939 -12.17668 -12.14376 -11.66530 -11.24329 -10.65086 -10.60590 -10.46948 -10.23143 -9.70157 -9.07715 -9.01393 -8.20243 -6.35443 -0.74375 0.53645 0.83237 1.10016 1.35385 1.36767 1.38089 1.49980 1.96604 2.34637 2.61825 2.65308 3.08681 3.39664 3.94851 4.01353 4.12300 4.19290 4.22265 4.43625 4.56627 4.61229 4.62458 4.63209 4.82725 4.95130 4.99490 5.09882 5.16002 5.23238 5.32967 5.48538 5.59263 5.74703 5.85250 5.88368 6.08068 6.72753 6.84591 6.88772 7.30391 7.52642 8.86138 Molecular weight = 292.10amu Principal moments of inertia in cm(-1) A = 0.010956 B = 0.007248 C = 0.004699 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2555.117816 B = 3861.951396 C = 5956.825201 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.157 4.157 2 C -0.191 4.191 3 C 0.133 3.867 4 N -0.594 5.594 5 C 0.266 3.734 6 C -0.532 4.532 7 H 0.055 0.945 8 C 0.008 3.992 9 N -0.930 5.930 10 Si 0.962 3.038 11 H -0.263 1.263 12 H -0.281 1.281 13 H -0.272 1.272 14 C 0.513 3.487 15 O -0.575 6.575 16 C -0.218 4.218 17 C 0.022 3.978 18 C -0.236 4.236 19 C 0.051 3.949 20 N -0.510 5.510 21 C -0.007 4.007 22 C -0.075 4.075 23 S 0.221 5.779 24 H 0.123 0.877 25 H 0.111 0.889 26 H 0.087 0.913 27 H 0.107 0.893 28 H 0.076 0.924 29 H -0.005 1.005 30 H 0.014 0.986 31 H 0.265 0.735 32 H 0.168 0.832 33 H 0.193 0.807 34 H 0.200 0.800 35 H 0.106 0.894 36 H 0.088 0.912 37 H 0.078 0.922 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.293 7.216 3.423 17.253 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C -0.211 4.211 3 C 0.011 3.989 4 N -0.323 5.323 5 C 0.144 3.856 6 C -0.571 4.571 7 H 0.073 0.927 8 C -0.191 4.191 9 N -0.571 5.571 10 Si 0.786 3.214 11 H -0.187 1.187 12 H -0.207 1.207 13 H -0.197 1.197 14 C 0.306 3.694 15 O -0.459 6.459 16 C -0.242 4.242 17 C 0.000 4.000 18 C -0.358 4.358 19 C -0.106 4.106 20 N -0.226 5.226 21 C -0.278 4.278 22 C -0.135 4.135 23 S 0.482 5.518 24 H 0.141 0.859 25 H 0.129 0.871 26 H 0.105 0.895 27 H 0.125 0.875 28 H 0.094 0.906 29 H 0.014 0.986 30 H 0.032 0.968 31 H 0.074 0.926 32 H 0.185 0.815 33 H 0.210 0.790 34 H 0.217 0.783 35 H 0.124 0.876 36 H 0.107 0.893 37 H 0.097 0.903 Dipole moment (debyes) X Y Z Total from point charges -13.993 7.487 3.547 16.261 hybrid contribution 0.553 -0.636 -0.026 0.843 sum -13.439 6.851 3.521 15.490 Atomic orbital electron populations 1.24048 0.94296 1.03633 0.97501 1.23226 0.97130 0.98003 1.02718 1.20826 0.92072 0.96561 0.89414 1.48206 1.13216 1.60017 1.10896 1.18645 0.78373 0.93773 0.94820 1.21680 0.94074 0.96043 1.45277 0.92689 1.25829 0.99537 0.98214 0.95482 1.70071 1.14512 1.22282 1.50190 0.85446 0.78514 0.79340 0.78066 1.18706 1.20685 1.19735 1.17978 0.89250 0.79694 0.82505 1.90885 1.58088 1.56826 1.40142 1.22498 0.96084 1.04494 1.01106 1.21033 0.98852 0.90980 0.89144 1.24063 1.00220 1.12903 0.98599 1.22701 0.97999 1.01234 0.88672 1.65944 1.01678 1.15156 1.39832 1.27705 1.01235 1.03819 0.95075 1.20498 0.88954 1.02641 1.01430 1.84169 1.12479 1.48003 1.07128 0.85850 0.87072 0.89505 0.87511 0.90586 0.98647 0.96779 0.92568 0.81467 0.78994 0.78340 0.87611 0.89282 0.90350 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.93 13.97 67.78 0.95 -1.99 16 2 C -0.19 -5.17 9.84 25.65 0.25 -4.92 16 3 C 0.13 4.17 5.49 85.63 0.47 4.64 16 4 N -0.59 -25.24 2.44 -841.17 -2.05 -27.30 16 5 C 0.27 14.42 5.16 85.63 0.44 14.86 16 6 C -0.53 -30.40 9.39 25.60 0.24 -30.16 16 7 H 0.05 3.10 7.81 -2.91 -0.02 3.08 16 8 C 0.01 0.46 5.46 84.65 0.46 0.92 16 9 N -0.93 -56.62 13.29 21.45 0.28 -56.33 16 10 Si 0.96 44.58 29.54 68.60 2.03 46.60 16 11 H -0.26 -11.67 7.11 99.48 0.71 -10.97 16 12 H -0.28 -12.89 7.11 99.48 0.71 -12.18 16 13 H -0.27 -12.04 7.11 99.48 0.71 -11.33 16 14 C 0.51 21.02 7.02 85.06 0.60 21.62 16 15 O -0.58 -28.25 11.10 -4.61 -0.05 -28.31 16 16 C -0.22 -6.14 9.02 22.47 0.20 -5.94 16 17 C 0.02 0.52 9.93 22.51 0.22 0.75 16 18 C -0.24 -7.45 4.67 22.86 0.11 -7.34 16 19 C 0.05 1.57 11.38 84.55 0.96 2.53 16 20 N -0.51 -17.66 10.50 -189.28 -1.99 -19.65 16 21 C -0.01 -0.22 7.37 88.48 0.65 0.43 16 22 C -0.08 -1.97 10.46 71.24 0.74 -1.23 16 23 S 0.22 8.06 19.44 -56.49 -1.10 6.96 16 24 H 0.12 1.62 7.73 -2.91 -0.02 1.60 16 25 H 0.11 1.77 8.06 -2.91 -0.02 1.74 16 26 H 0.09 2.71 8.06 -2.91 -0.02 2.69 16 27 H 0.11 2.53 5.83 -2.38 -0.01 2.51 16 28 H 0.08 2.55 8.07 -2.39 -0.02 2.53 16 29 H 0.00 -0.29 7.42 -2.39 -0.02 -0.31 16 30 H 0.01 0.80 8.07 -2.38 -0.02 0.78 16 31 H 0.27 15.14 8.31 -92.71 -0.77 14.37 16 32 H 0.17 3.33 5.74 -2.91 -0.02 3.31 16 33 H 0.19 2.55 8.06 -2.91 -0.02 2.53 16 34 H 0.20 4.56 8.06 -2.91 -0.02 4.54 16 35 H 0.11 2.15 8.14 -2.39 -0.02 2.13 16 36 H 0.09 2.21 8.14 -2.39 -0.02 2.19 16 37 H 0.08 2.05 8.14 -2.39 -0.02 2.03 16 Total: -1.00 -77.08 332.42 4.49 -72.59 By element: Atomic # 1 Polarization: 10.19 SS G_CDS: 1.07 Total: 11.25 kcal Atomic # 6 Polarization: -12.12 SS G_CDS: 6.30 Total: -5.82 kcal Atomic # 7 Polarization: -99.52 SS G_CDS: -3.75 Total: -103.28 kcal Atomic # 8 Polarization: -28.25 SS G_CDS: -0.05 Total: -28.31 kcal Atomic # 14 Polarization: 44.58 SS G_CDS: 2.03 Total: 46.60 kcal Atomic # 16 Polarization: 8.06 SS G_CDS: -1.10 Total: 6.96 kcal Total: -77.08 4.49 -72.59 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000493771497.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 115.805 kcal (2) G-P(sol) polarization free energy of solvation -77.080 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 38.724 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.492 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.589 kcal (6) G-S(sol) free energy of system = (1) + (5) 43.216 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds