Wall clock time and date at job start Tue Mar 31 2020 06:44:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.52995 * 109.47518 * 2 1 4 4 H 1.09001 * 109.47965 * 185.15830 * 3 2 1 5 5 C 1.50697 * 109.47256 * 305.16274 * 3 2 1 6 6 H 1.08002 * 120.00153 * 119.99673 * 5 3 2 7 7 C 1.37881 * 120.00161 * 299.99735 * 5 3 2 8 8 N 1.31522 * 119.99705 * 0.02562 * 7 5 3 9 9 Si 1.86799 * 120.00347 * 180.02562 * 7 5 3 10 10 H 1.48504 * 109.47165 * 359.97438 * 9 7 5 11 11 H 1.48494 * 109.47396 * 120.00083 * 9 7 5 12 12 H 1.48504 * 109.47042 * 240.00188 * 9 7 5 13 13 N 1.46907 * 109.46899 * 65.15760 * 3 2 1 14 14 C 1.46903 * 110.99391 * 85.90354 * 13 3 2 15 15 C 1.50704 * 109.46626 * 174.83378 * 14 13 3 16 16 C 1.40780 * 126.67302 * 94.71284 * 15 14 13 17 17 C 1.37270 * 103.86314 * 179.85914 * 16 15 14 18 18 C 1.47010 * 126.96484 * 180.12805 * 17 16 15 19 19 C 1.36195 * 125.33537 * 180.02562 * 18 17 16 20 20 C 1.37722 * 114.44542 * 179.83267 * 19 18 17 21 21 C 1.33731 * 115.18891 * 0.45432 * 20 19 18 22 22 S 1.75821 * 109.96505 * 359.75726 * 21 20 19 23 23 O 1.34616 * 106.06560 * 0.39232 * 17 16 15 24 24 N 1.20890 * 111.39885 * 359.73389 * 23 17 16 25 25 H 1.09002 * 109.46873 * 54.84821 * 1 2 3 26 26 H 1.08998 * 109.47280 * 294.84718 * 1 2 3 27 27 H 1.09001 * 109.47495 * 174.84567 * 1 2 3 28 28 H 1.09000 * 109.47074 * 120.00258 * 2 1 3 29 29 H 1.09007 * 109.47224 * 239.99859 * 2 1 3 30 30 H 0.97000 * 119.99702 * 180.02562 * 8 7 5 31 31 H 1.00898 * 110.99755 * 321.95016 * 13 3 2 32 32 H 1.08994 * 109.46864 * 294.82543 * 14 13 3 33 33 H 1.08994 * 109.47486 * 54.83231 * 14 13 3 34 34 H 1.07991 * 128.06595 * 359.96223 * 16 15 14 35 35 H 1.08003 * 122.77857 * 359.97438 * 19 18 17 36 36 H 1.08001 * 122.40064 * 180.19124 * 20 19 18 37 37 H 1.08006 * 125.01469 * 179.76688 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 1 3.1261 1.4439 -0.0924 5 6 1.4361 2.1888 -1.1615 6 1 0.8270 3.0628 -0.9838 7 6 1.6612 1.7560 -2.4511 8 7 2.4025 0.6914 -2.6675 9 14 0.9132 2.6816 -3.8910 10 1 0.1268 3.8346 -3.3835 11 1 1.9963 3.1734 -4.7798 12 1 0.0211 1.7723 -4.6543 13 7 1.6547 2.0980 1.2569 14 6 2.6433 1.8365 2.3116 15 6 2.2830 2.6250 3.5443 16 6 1.5339 2.1683 4.6454 17 6 1.4925 3.2518 5.4871 18 6 0.8330 3.3275 6.7988 19 6 0.8123 4.4227 7.6081 20 6 0.1246 4.2465 8.7882 21 6 -0.4060 3.0313 8.9618 22 16 -0.0466 2.0153 7.5725 23 8 2.1730 4.2328 4.8654 24 7 2.5997 3.8643 3.7960 25 1 -0.3633 0.5917 -0.8403 26 1 -0.3634 0.4318 0.9325 27 1 -0.3634 -1.0235 -0.0923 28 1 1.8933 -0.5139 0.8900 29 1 1.8933 -0.5139 -0.8900 30 1 2.5611 0.3872 -3.5748 31 1 0.7320 1.8103 1.5467 32 1 2.6482 0.7728 2.5492 33 1 3.6323 2.1360 1.9649 34 1 1.0957 1.1925 4.7939 35 1 1.2933 5.3533 7.3450 36 1 0.0249 5.0320 9.5227 37 1 -0.9719 2.7200 9.8274 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000517957689.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:44:32 Heat of formation + Delta-G solvation = 93.520454 kcal Electronic energy + Delta-G solvation = -20095.679603 eV Core-core repulsion = 16968.072859 eV Total energy + Delta-G solvation = -3127.606744 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 292.099 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -44.71611 -37.99639 -36.82412 -34.39926 -32.87268 -32.03685 -30.40197 -28.76731 -26.99435 -25.05925 -24.53429 -23.25868 -22.90274 -21.11797 -19.37488 -19.04623 -18.29211 -17.44826 -16.55492 -16.18736 -15.63928 -14.84451 -14.77901 -14.24316 -13.63624 -13.57519 -13.45939 -13.07841 -12.92847 -12.73740 -12.54229 -12.47256 -11.91152 -11.73632 -11.22511 -10.96014 -10.92721 -10.72358 -10.53403 -10.37598 -10.11718 -10.01066 -9.69738 -9.59211 -9.01487 -8.85528 -8.39681 -8.35518 -7.30847 -5.98527 -3.99711 0.16114 1.06011 1.58762 1.71522 2.32907 2.64844 3.19940 3.32067 3.40295 3.46095 4.30391 4.37861 4.46028 4.70741 4.95653 5.18256 5.19924 5.25906 5.33441 5.43551 5.58865 5.69397 5.87867 5.97328 6.03563 6.08221 6.23485 6.31973 6.34392 6.53741 6.85174 7.21279 7.22791 7.48991 7.65989 7.87368 8.23353 8.41510 8.47821 8.56769 9.06058 9.63862 11.08662 Molecular weight = 292.10amu Principal moments of inertia in cm(-1) A = 0.029573 B = 0.003034 C = 0.002941 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 946.592027 B = 9225.533237 C = 9518.774637 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.130 4.130 2 C -0.146 4.146 3 C 0.216 3.784 4 H 0.035 0.965 5 C -0.487 4.487 6 H 0.063 0.937 7 C 0.057 3.943 8 N -0.896 5.896 9 Si 0.894 3.106 10 H -0.273 1.273 11 H -0.285 1.285 12 H -0.286 1.286 13 N -0.677 5.677 14 C 0.132 3.868 15 C 0.043 3.957 16 C -0.209 4.209 17 C 0.022 3.978 18 C -0.126 4.126 19 C -0.111 4.111 20 C -0.133 4.133 21 C -0.216 4.216 22 S 0.165 5.835 23 O 0.113 5.887 24 N -0.342 5.342 25 H 0.069 0.931 26 H 0.026 0.974 27 H 0.024 0.976 28 H 0.011 0.989 29 H 0.095 0.905 30 H 0.259 0.741 31 H 0.329 0.671 32 H 0.044 0.956 33 H 0.085 0.915 34 H 0.170 0.830 35 H 0.149 0.851 36 H 0.146 0.854 37 H 0.169 0.831 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.608 1.378 23.091 23.587 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.188 4.188 2 C -0.186 4.186 3 C 0.109 3.891 4 H 0.053 0.947 5 C -0.526 4.526 6 H 0.081 0.919 7 C -0.144 4.144 8 N -0.536 5.536 9 Si 0.722 3.278 10 H -0.197 1.197 11 H -0.211 1.211 12 H -0.212 1.212 13 N -0.309 5.309 14 C 0.001 3.999 15 C -0.115 4.115 16 C -0.232 4.232 17 C -0.043 4.043 18 C -0.244 4.244 19 C -0.143 4.143 20 C -0.163 4.163 21 C -0.352 4.352 22 S 0.430 5.570 23 O 0.042 5.958 24 N -0.043 5.043 25 H 0.088 0.912 26 H 0.045 0.955 27 H 0.043 0.957 28 H 0.030 0.970 29 H 0.113 0.887 30 H 0.069 0.931 31 H 0.147 0.853 32 H 0.062 0.938 33 H 0.103 0.897 34 H 0.187 0.813 35 H 0.167 0.833 36 H 0.163 0.837 37 H 0.187 0.813 Dipole moment (debyes) X Y Z Total from point charges -3.900 1.301 21.675 22.062 hybrid contribution -0.669 0.208 0.042 0.702 sum -4.569 1.509 21.718 22.245 Atomic orbital electron populations 1.21601 0.97616 0.98760 1.00807 1.22121 0.95104 1.00938 1.00396 1.19265 0.96184 0.88648 0.85017 0.94709 1.21086 1.30500 1.11487 0.89560 0.91926 1.24909 0.95542 0.95179 0.98733 1.69889 1.39070 1.24008 1.20642 0.86501 0.78968 0.79890 0.82447 1.19735 1.21149 1.21210 1.60798 1.03480 1.63539 1.03082 1.20255 0.98475 0.94404 0.86737 1.23552 0.98510 0.91098 0.98302 1.22633 1.05426 1.00733 0.94407 1.21278 0.99971 0.89242 0.93814 1.21859 1.07569 0.99391 0.95608 1.20737 1.00911 0.98968 0.93642 1.20029 1.00095 0.97713 0.98459 1.25904 1.08224 0.97957 1.03142 1.84275 1.49018 1.12962 1.10725 1.85005 1.51441 1.35901 1.23424 1.73863 1.17987 1.14964 0.97489 0.91161 0.95452 0.95670 0.97015 0.88706 0.93141 0.85279 0.93769 0.89677 0.81259 0.83291 0.83666 0.81320 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.73 9.40 37.16 0.35 -2.38 16 2 C -0.15 -3.34 5.51 -26.74 -0.15 -3.49 16 3 C 0.22 5.31 2.33 -68.86 -0.16 5.15 16 4 H 0.04 0.94 7.70 -51.93 -0.40 0.54 16 5 C -0.49 -13.28 7.25 -34.44 -0.25 -13.53 16 6 H 0.06 1.76 7.81 -52.49 -0.41 1.35 16 7 C 0.06 1.56 5.28 -17.81 -0.09 1.46 16 8 N -0.90 -25.19 11.38 55.43 0.63 -24.56 16 9 Si 0.89 21.50 29.54 -169.99 -5.02 16.48 16 10 H -0.27 -6.56 7.11 56.52 0.40 -6.15 16 11 H -0.29 -6.88 7.11 56.52 0.40 -6.48 16 12 H -0.29 -6.80 7.11 56.52 0.40 -6.40 16 13 N -0.68 -14.59 6.19 -109.22 -0.68 -15.26 16 14 C 0.13 2.44 6.09 -4.97 -0.03 2.41 16 15 C 0.04 0.75 6.86 -82.25 -0.56 0.18 16 16 C -0.21 -2.97 10.92 -38.97 -0.43 -3.39 16 17 C 0.02 0.30 7.29 -36.38 -0.27 0.04 16 18 C -0.13 -1.39 6.45 -36.76 -0.24 -1.63 16 19 C -0.11 -1.04 10.17 -40.51 -0.41 -1.45 16 20 C -0.13 -0.98 10.15 -41.35 -0.42 -1.40 16 21 C -0.22 -1.50 11.21 29.15 0.33 -1.18 16 22 S 0.17 1.43 23.12 -107.50 -2.49 -1.05 16 23 O 0.11 1.78 11.23 15.62 0.18 1.95 16 24 N -0.34 -6.19 12.05 33.52 0.40 -5.79 16 25 H 0.07 1.63 6.85 -51.93 -0.36 1.27 16 26 H 0.03 0.51 6.63 -51.93 -0.34 0.16 16 27 H 0.02 0.47 8.14 -51.93 -0.42 0.05 16 28 H 0.01 0.24 7.50 -51.93 -0.39 -0.15 16 29 H 0.09 2.45 6.23 -51.92 -0.32 2.12 16 30 H 0.26 6.98 8.31 -40.82 -0.34 6.64 16 31 H 0.33 6.75 6.69 -39.29 -0.26 6.49 16 32 H 0.04 0.75 7.53 -51.93 -0.39 0.36 16 33 H 0.08 1.65 7.92 -51.93 -0.41 1.24 16 34 H 0.17 1.98 8.06 -52.49 -0.42 1.56 16 35 H 0.15 1.24 8.06 -52.48 -0.42 0.82 16 36 H 0.15 0.72 8.06 -52.49 -0.42 0.30 16 37 H 0.17 0.72 8.06 -52.48 -0.42 0.30 16 LS Contribution 327.31 15.07 4.93 4.93 Total: -1.00 -29.59 327.31 -8.91 -38.50 By element: Atomic # 1 Polarization: 8.55 SS G_CDS: -4.54 Total: 4.01 kcal Atomic # 6 Polarization: -16.88 SS G_CDS: -2.33 Total: -19.21 kcal Atomic # 7 Polarization: -45.97 SS G_CDS: 0.36 Total: -45.61 kcal Atomic # 8 Polarization: 1.78 SS G_CDS: 0.18 Total: 1.95 kcal Atomic # 14 Polarization: 21.50 SS G_CDS: -5.02 Total: 16.48 kcal Atomic # 16 Polarization: 1.43 SS G_CDS: -2.49 Total: -1.05 kcal Total LS contribution 4.93 Total: 4.93 kcal Total: -29.59 -8.91 -38.50 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000517957689.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 132.016 kcal (2) G-P(sol) polarization free energy of solvation -29.588 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 102.428 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.907 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.495 kcal (6) G-S(sol) free energy of system = (1) + (5) 93.520 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds