Wall clock time and date at job start Tue Mar 31 2020 06:44:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.52996 * 109.46904 * 2 1 4 4 H 1.09006 * 109.47189 * 179.82777 * 3 2 1 5 5 C 1.50702 * 109.47216 * 299.82594 * 3 2 1 6 6 H 1.08000 * 119.99875 * 119.99829 * 5 3 2 7 7 C 1.37872 * 119.99902 * 300.00352 * 5 3 2 8 8 N 1.31522 * 120.00418 * 359.97438 * 7 5 3 9 9 Si 1.86804 * 120.00035 * 179.97438 * 7 5 3 10 10 H 1.48497 * 109.47235 * 89.99777 * 9 7 5 11 11 H 1.48497 * 109.47275 * 209.99785 * 9 7 5 12 12 H 1.48499 * 109.46938 * 329.99942 * 9 7 5 13 13 N 1.46904 * 109.47435 * 59.82771 * 3 2 1 14 14 C 1.46899 * 110.99567 * 85.92554 * 13 3 2 15 15 C 1.50704 * 109.46488 * 175.55105 * 14 13 3 16 16 C 1.33686 * 122.06025 * 95.00553 * 15 14 13 17 17 S 1.76246 * 108.26762 * 179.97438 * 16 15 14 18 18 C 1.76180 * 89.85394 * 359.97438 * 17 16 15 19 19 C 1.47102 * 125.48000 * 179.97438 * 18 17 16 20 20 C 1.36255 * 125.96523 * 0.03001 * 19 18 17 21 21 C 1.40783 * 106.72492 * 179.97438 * 20 19 18 22 22 C 1.34820 * 107.07475 * 359.97438 * 21 20 19 23 23 O 1.34280 * 108.71953 * 359.73679 * 22 21 20 24 24 N 1.30483 * 109.03244 * 359.76347 * 18 17 16 25 25 H 1.09001 * 109.47402 * 175.59373 * 1 2 3 26 26 H 1.09002 * 109.47456 * 55.59310 * 1 2 3 27 27 H 1.08999 * 109.47187 * 295.59009 * 1 2 3 28 28 H 1.09001 * 109.47092 * 119.99826 * 2 1 3 29 29 H 1.08995 * 109.47021 * 239.99752 * 2 1 3 30 30 H 0.96994 * 120.00025 * 179.97438 * 8 7 5 31 31 H 1.00896 * 111.00060 * 209.88589 * 13 3 2 32 32 H 1.08995 * 109.47219 * 295.54936 * 14 13 3 33 33 H 1.08999 * 109.47280 * 55.55612 * 14 13 3 34 34 H 1.08005 * 125.86530 * 359.93765 * 16 15 14 35 35 H 1.08001 * 126.63468 * 0.02562 * 20 19 18 36 36 H 1.08005 * 126.46519 * 180.02562 * 21 20 19 37 37 H 1.08002 * 125.63507 * 180.02562 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 1 3.1300 1.4425 0.0031 5 6 1.5411 2.1517 -1.2326 6 1 0.9199 3.0298 -1.1362 7 6 1.8777 1.6793 -2.4834 8 7 2.6346 0.6101 -2.6009 9 14 1.2588 2.5579 -4.0113 10 1 2.2376 3.5995 -4.4140 11 1 1.0972 1.5775 -5.1149 12 1 -0.0503 3.1952 -3.7197 13 7 1.5469 2.1362 1.1974 14 6 2.4392 1.9095 2.3420 15 6 1.9630 2.7218 3.5187 16 6 1.1665 2.2068 4.4607 17 16 0.8385 3.4620 5.6536 18 6 1.8372 4.5875 4.7373 19 6 2.0996 5.9882 5.1021 20 6 1.6153 6.6333 6.2002 21 6 2.1167 7.9479 6.1517 22 6 2.8743 8.0419 5.0405 23 8 2.8669 6.8552 4.4122 24 7 2.3103 3.9774 3.6853 25 1 -0.3634 -1.0246 -0.0790 26 1 -0.3634 0.5807 -0.8479 27 1 -0.3633 0.4439 0.9268 28 1 1.8933 -0.5138 0.8900 29 1 1.8933 -0.5138 -0.8899 30 1 2.8711 0.2777 -3.4809 31 1 1.4286 3.1226 1.0208 32 1 2.4322 0.8515 2.6042 33 1 3.4527 2.2118 2.0781 34 1 0.7884 1.1954 4.4861 35 1 0.9721 6.2165 6.9610 36 1 1.9303 8.7329 6.8697 37 1 3.4037 8.9244 4.7127 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000564599293.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:44:43 Heat of formation + Delta-G solvation = 61.016873 kcal Electronic energy + Delta-G solvation = -20153.730711 eV Core-core repulsion = 17024.714506 eV Total energy + Delta-G solvation = -3129.016205 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 292.099 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -42.70668 -39.62736 -36.16361 -33.39899 -32.96551 -31.59134 -30.45566 -28.95501 -26.84215 -25.28150 -23.94777 -23.05270 -22.08743 -20.97993 -19.32337 -18.99605 -18.31909 -17.09203 -16.42250 -16.29603 -15.63981 -14.93410 -14.47649 -14.17304 -13.94731 -13.42870 -13.23941 -13.15402 -13.13370 -12.86221 -12.69311 -12.18152 -11.97991 -11.40412 -11.22555 -10.90807 -10.75129 -10.39189 -10.28429 -10.09550 -9.81709 -9.78716 -9.66939 -9.39079 -9.20692 -8.77208 -8.45032 -8.09772 -7.26048 -6.00367 -4.05471 0.22949 1.00494 1.61812 1.69971 2.31918 2.91249 3.05324 3.31359 3.37974 3.42036 3.85430 4.42699 4.68587 4.69191 4.95815 5.26633 5.30839 5.41271 5.51837 5.52511 5.59045 5.70407 5.97139 6.12691 6.23507 6.31761 6.54429 6.67918 6.83272 6.85757 7.22532 7.29293 7.49111 7.74388 7.75868 7.80861 7.84850 8.26631 8.37874 8.65263 9.02701 9.59095 11.05652 Molecular weight = 292.10amu Principal moments of inertia in cm(-1) A = 0.018938 B = 0.003709 C = 0.003247 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1478.139070 B = 7547.330522 C = 8620.170297 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.120 4.120 2 C -0.103 4.103 3 C 0.216 3.784 4 H 0.003 0.997 5 C -0.511 4.511 6 H 0.059 0.941 7 C 0.064 3.936 8 N -0.889 5.889 9 Si 0.893 3.107 10 H -0.282 1.282 11 H -0.286 1.286 12 H -0.274 1.274 13 N -0.678 5.678 14 C 0.130 3.870 15 C 0.084 3.916 16 C -0.222 4.222 17 S 0.111 5.889 18 C 0.118 3.882 19 C 0.060 3.940 20 C -0.176 4.176 21 C -0.214 4.214 22 C -0.021 4.021 23 O -0.150 6.150 24 N -0.439 5.439 25 H 0.013 0.987 26 H 0.056 0.944 27 H 0.040 0.960 28 H 0.010 0.990 29 H 0.087 0.913 30 H 0.260 0.740 31 H 0.335 0.665 32 H 0.081 0.919 33 H 0.041 0.959 34 H 0.185 0.815 35 H 0.154 0.846 36 H 0.155 0.845 37 H 0.209 0.791 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.749 9.174 19.096 21.258 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.177 4.177 2 C -0.141 4.141 3 C 0.108 3.892 4 H 0.021 0.979 5 C -0.550 4.550 6 H 0.077 0.923 7 C -0.138 4.138 8 N -0.528 5.528 9 Si 0.721 3.279 10 H -0.208 1.208 11 H -0.212 1.212 12 H -0.199 1.199 13 N -0.310 5.310 14 C -0.003 4.003 15 C -0.049 4.049 16 C -0.362 4.362 17 S 0.365 5.635 18 C -0.156 4.156 19 C 0.006 3.994 20 C -0.199 4.199 21 C -0.233 4.233 22 C -0.091 4.091 23 O -0.044 6.044 24 N -0.153 5.153 25 H 0.032 0.968 26 H 0.075 0.925 27 H 0.060 0.940 28 H 0.028 0.972 29 H 0.106 0.894 30 H 0.070 0.930 31 H 0.153 0.847 32 H 0.100 0.900 33 H 0.059 0.941 34 H 0.202 0.798 35 H 0.172 0.828 36 H 0.173 0.827 37 H 0.225 0.775 Dipole moment (debyes) X Y Z Total from point charges -2.198 8.723 19.398 21.383 hybrid contribution 0.630 0.602 -1.649 1.865 sum -1.568 9.325 17.749 20.111 Atomic orbital electron populations 1.21450 0.97513 0.97394 1.01338 1.21441 0.95026 0.98156 0.99502 1.19181 0.93135 0.91443 0.85399 0.97949 1.21171 1.31624 1.11919 0.90282 0.92321 1.24871 0.95045 0.94994 0.98888 1.69881 1.36701 1.22728 1.23499 0.86570 0.79274 0.79342 0.82681 1.20785 1.21231 1.19865 1.60851 1.47884 1.16494 1.05788 1.20562 0.95108 0.96812 0.87791 1.20382 0.97110 0.89252 0.98138 1.26933 1.06367 1.04628 0.98226 1.84614 1.48257 1.03624 1.27013 1.24151 1.01358 0.94597 0.95503 1.18986 0.99087 0.87635 0.93656 1.21786 1.04621 0.94696 0.98761 1.21719 1.03188 0.97842 1.00589 1.24339 1.02868 0.87710 0.94230 1.84236 1.54638 1.19391 1.46135 1.66613 1.22468 1.08893 1.17362 0.96766 0.92476 0.94050 0.97162 0.89425 0.92957 0.84737 0.90037 0.94097 0.79771 0.82826 0.82733 0.77470 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -2.67 9.52 37.16 0.35 -2.32 16 2 C -0.10 -2.47 5.59 -26.73 -0.15 -2.62 16 3 C 0.22 5.40 2.30 -68.86 -0.16 5.25 16 4 H 0.00 0.08 7.71 -51.93 -0.40 -0.32 16 5 C -0.51 -13.93 7.26 -34.44 -0.25 -14.18 16 6 H 0.06 1.61 7.60 -52.49 -0.40 1.21 16 7 C 0.06 1.76 5.30 -17.82 -0.09 1.66 16 8 N -0.89 -25.26 11.32 55.43 0.63 -24.63 16 9 Si 0.89 21.43 29.54 -169.99 -5.02 16.41 16 10 H -0.28 -6.74 7.11 56.52 0.40 -6.34 16 11 H -0.29 -6.82 7.11 56.52 0.40 -6.42 16 12 H -0.27 -6.52 7.11 56.52 0.40 -6.12 16 13 N -0.68 -14.68 5.64 -109.22 -0.62 -15.30 16 14 C 0.13 2.42 5.94 -4.97 -0.03 2.39 16 15 C 0.08 1.41 6.15 -84.40 -0.52 0.89 16 16 C -0.22 -3.06 11.06 29.14 0.32 -2.74 16 17 S 0.11 1.31 23.19 -107.50 -2.49 -1.19 16 18 C 0.12 1.77 7.50 -14.53 -0.11 1.66 16 19 C 0.06 0.82 7.24 -36.70 -0.27 0.56 16 20 C -0.18 -1.84 10.64 -39.33 -0.42 -2.26 16 21 C -0.21 -1.88 10.88 -39.83 -0.43 -2.31 16 22 C -0.02 -0.20 12.08 29.52 0.36 0.16 16 23 O -0.15 -2.08 10.68 4.47 0.05 -2.03 16 24 N -0.44 -7.75 10.57 -7.72 -0.08 -7.83 16 25 H 0.01 0.27 8.14 -51.93 -0.42 -0.15 16 26 H 0.06 1.38 7.07 -51.93 -0.37 1.02 16 27 H 0.04 0.87 7.74 -51.93 -0.40 0.47 16 28 H 0.01 0.22 7.60 -51.93 -0.39 -0.18 16 29 H 0.09 2.35 6.07 -51.93 -0.32 2.03 16 30 H 0.26 7.08 8.31 -40.82 -0.34 6.74 16 31 H 0.34 7.58 8.13 -39.29 -0.32 7.26 16 32 H 0.08 1.43 7.55 -51.93 -0.39 1.03 16 33 H 0.04 0.82 7.94 -51.93 -0.41 0.40 16 34 H 0.19 2.14 8.06 -52.48 -0.42 1.72 16 35 H 0.15 1.26 8.06 -52.49 -0.42 0.84 16 36 H 0.15 0.89 8.06 -52.48 -0.42 0.47 16 37 H 0.21 1.08 8.06 -52.49 -0.42 0.66 16 LS Contribution 329.84 15.07 4.97 4.97 Total: -1.00 -30.53 329.84 -8.61 -39.14 By element: Atomic # 1 Polarization: 8.97 SS G_CDS: -4.65 Total: 4.32 kcal Atomic # 6 Polarization: -12.47 SS G_CDS: -1.40 Total: -13.87 kcal Atomic # 7 Polarization: -47.69 SS G_CDS: -0.07 Total: -47.76 kcal Atomic # 8 Polarization: -2.08 SS G_CDS: 0.05 Total: -2.03 kcal Atomic # 14 Polarization: 21.43 SS G_CDS: -5.02 Total: 16.41 kcal Atomic # 16 Polarization: 1.31 SS G_CDS: -2.49 Total: -1.19 kcal Total LS contribution 4.97 Total: 4.97 kcal Total: -30.53 -8.61 -39.14 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000564599293.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 100.162 kcal (2) G-P(sol) polarization free energy of solvation -30.532 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 69.630 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.613 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.145 kcal (6) G-S(sol) free energy of system = (1) + (5) 61.017 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds