Wall clock time and date at job start Tue Mar 31 2020 06:44:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.52996 * 109.46904 * 2 1 4 4 H 1.09006 * 109.47189 * 179.82777 * 3 2 1 5 5 C 1.50702 * 109.47216 * 299.82594 * 3 2 1 6 6 H 1.08000 * 119.99875 * 119.99829 * 5 3 2 7 7 C 1.37872 * 119.99902 * 300.00352 * 5 3 2 8 8 N 1.31522 * 120.00418 * 359.97438 * 7 5 3 9 9 Si 1.86804 * 120.00035 * 179.97438 * 7 5 3 10 10 H 1.48497 * 109.47235 * 89.99777 * 9 7 5 11 11 H 1.48497 * 109.47275 * 209.99785 * 9 7 5 12 12 H 1.48499 * 109.46938 * 329.99942 * 9 7 5 13 13 N 1.46904 * 109.47435 * 59.82771 * 3 2 1 14 14 C 1.46899 * 110.99567 * 85.92554 * 13 3 2 15 15 C 1.50704 * 109.46488 * 175.55105 * 14 13 3 16 16 C 1.33686 * 122.06025 * 95.00553 * 15 14 13 17 17 S 1.76246 * 108.26762 * 179.97438 * 16 15 14 18 18 C 1.76180 * 89.85394 * 359.97438 * 17 16 15 19 19 C 1.47102 * 125.48000 * 179.97438 * 18 17 16 20 20 C 1.36255 * 125.96523 * 0.03001 * 19 18 17 21 21 C 1.40783 * 106.72492 * 179.97438 * 20 19 18 22 22 C 1.34820 * 107.07475 * 359.97438 * 21 20 19 23 23 O 1.34280 * 108.71953 * 359.73679 * 22 21 20 24 24 N 1.30483 * 109.03244 * 359.76347 * 18 17 16 25 25 H 1.09001 * 109.47402 * 175.59373 * 1 2 3 26 26 H 1.09002 * 109.47456 * 55.59310 * 1 2 3 27 27 H 1.08999 * 109.47187 * 295.59009 * 1 2 3 28 28 H 1.09001 * 109.47092 * 119.99826 * 2 1 3 29 29 H 1.08995 * 109.47021 * 239.99752 * 2 1 3 30 30 H 0.96994 * 120.00025 * 179.97438 * 8 7 5 31 31 H 1.00896 * 111.00060 * 209.88589 * 13 3 2 32 32 H 1.08995 * 109.47219 * 295.54936 * 14 13 3 33 33 H 1.08999 * 109.47280 * 55.55612 * 14 13 3 34 34 H 1.08005 * 125.86530 * 359.93765 * 16 15 14 35 35 H 1.08001 * 126.63468 * 0.02562 * 20 19 18 36 36 H 1.08005 * 126.46519 * 180.02562 * 21 20 19 37 37 H 1.08002 * 125.63507 * 180.02562 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 1 3.1300 1.4425 0.0031 5 6 1.5411 2.1517 -1.2326 6 1 0.9199 3.0298 -1.1362 7 6 1.8777 1.6793 -2.4834 8 7 2.6346 0.6101 -2.6009 9 14 1.2588 2.5579 -4.0113 10 1 2.2376 3.5995 -4.4140 11 1 1.0972 1.5775 -5.1149 12 1 -0.0503 3.1952 -3.7197 13 7 1.5469 2.1362 1.1974 14 6 2.4392 1.9095 2.3420 15 6 1.9630 2.7218 3.5187 16 6 1.1665 2.2068 4.4607 17 16 0.8385 3.4620 5.6536 18 6 1.8372 4.5875 4.7373 19 6 2.0996 5.9882 5.1021 20 6 1.6153 6.6333 6.2002 21 6 2.1167 7.9479 6.1517 22 6 2.8743 8.0419 5.0405 23 8 2.8669 6.8552 4.4122 24 7 2.3103 3.9774 3.6853 25 1 -0.3634 -1.0246 -0.0790 26 1 -0.3634 0.5807 -0.8479 27 1 -0.3633 0.4439 0.9268 28 1 1.8933 -0.5138 0.8900 29 1 1.8933 -0.5138 -0.8899 30 1 2.8711 0.2777 -3.4809 31 1 1.4286 3.1226 1.0208 32 1 2.4322 0.8515 2.6042 33 1 3.4527 2.2118 2.0781 34 1 0.7884 1.1954 4.4861 35 1 0.9721 6.2165 6.9610 36 1 1.9303 8.7329 6.8697 37 1 3.4037 8.9244 4.7127 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000564599293.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:44:42 Heat of formation + Delta-G solvation = 41.110355 kcal Electronic energy + Delta-G solvation = -20154.593923 eV Core-core repulsion = 17024.714506 eV Total energy + Delta-G solvation = -3129.879416 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 292.099 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -43.53100 -40.79695 -37.99724 -34.79393 -34.13451 -33.12909 -31.98981 -30.05321 -28.58530 -26.69858 -25.37162 -24.86922 -22.89492 -21.95937 -20.97923 -20.33946 -19.30161 -18.38717 -18.05127 -17.20638 -16.97248 -16.56585 -15.89922 -15.76794 -15.50974 -14.82012 -14.65965 -14.36639 -14.11607 -13.89842 -13.86146 -13.72367 -13.47624 -13.05570 -12.83997 -12.76314 -12.45196 -12.36770 -11.98406 -11.60362 -11.31019 -11.13654 -10.86878 -10.82293 -10.71407 -10.55379 -10.21497 -9.12730 -8.98548 -8.11473 -6.23707 -0.76535 0.01851 0.55219 0.77812 1.39993 1.40989 1.51050 1.52754 1.95821 2.12762 2.41546 2.88875 3.16974 3.69992 3.90038 3.98087 4.09842 4.14886 4.30743 4.56482 4.66095 4.69900 4.78552 4.81235 4.86887 4.95539 4.96643 5.06712 5.30036 5.38185 5.49830 5.55268 5.69241 5.82159 5.88841 6.03749 6.26706 6.41003 6.68013 6.71540 6.95252 7.44526 8.93578 Molecular weight = 292.10amu Principal moments of inertia in cm(-1) A = 0.018938 B = 0.003709 C = 0.003247 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1478.139070 B = 7547.330522 C = 8620.170297 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.107 4.107 2 C -0.097 4.097 3 C 0.221 3.779 4 H -0.036 1.036 5 C -0.526 4.526 6 H 0.051 0.949 7 C 0.019 3.981 8 N -0.914 5.914 9 Si 0.954 3.046 10 H -0.279 1.279 11 H -0.280 1.280 12 H -0.269 1.269 13 N -0.669 5.669 14 C 0.136 3.864 15 C 0.057 3.943 16 C -0.224 4.224 17 S 0.199 5.801 18 C 0.100 3.900 19 C 0.009 3.991 20 C -0.156 4.156 21 C -0.214 4.214 22 C -0.019 4.019 23 O -0.187 6.187 24 N -0.490 5.490 25 H 0.036 0.964 26 H 0.033 0.967 27 H 0.052 0.948 28 H 0.027 0.973 29 H 0.059 0.941 30 H 0.262 0.738 31 H 0.327 0.673 32 H 0.094 0.906 33 H 0.017 0.983 34 H 0.207 0.793 35 H 0.177 0.823 36 H 0.190 0.810 37 H 0.244 0.756 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.355 10.346 21.281 23.900 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.164 4.164 2 C -0.136 4.136 3 C 0.113 3.887 4 H -0.018 1.018 5 C -0.565 4.565 6 H 0.070 0.930 7 C -0.180 4.180 8 N -0.554 5.554 9 Si 0.780 3.220 10 H -0.205 1.205 11 H -0.206 1.206 12 H -0.194 1.194 13 N -0.299 5.299 14 C 0.004 3.996 15 C -0.075 4.075 16 C -0.364 4.364 17 S 0.454 5.546 18 C -0.173 4.173 19 C -0.044 4.044 20 C -0.179 4.179 21 C -0.233 4.233 22 C -0.089 4.089 23 O -0.083 6.083 24 N -0.206 5.206 25 H 0.055 0.945 26 H 0.052 0.948 27 H 0.071 0.929 28 H 0.045 0.955 29 H 0.077 0.923 30 H 0.071 0.929 31 H 0.143 0.857 32 H 0.112 0.888 33 H 0.035 0.965 34 H 0.224 0.776 35 H 0.195 0.805 36 H 0.207 0.793 37 H 0.260 0.740 Dipole moment (debyes) X Y Z Total from point charges -3.817 9.890 21.614 24.074 hybrid contribution 1.150 0.371 -2.153 2.469 sum -2.667 10.261 19.461 22.161 Atomic orbital electron populations 1.21307 0.95848 0.98465 1.00828 1.21304 0.96376 0.97042 0.98892 1.18993 0.90788 0.92533 0.86382 1.01832 1.21411 1.31605 1.11924 0.91533 0.93033 1.25598 0.95187 0.95650 1.01609 1.70008 1.37480 1.23784 1.24109 0.85615 0.78785 0.78321 0.79283 1.20507 1.20587 1.19403 1.60798 1.48256 1.15499 1.05302 1.20453 0.93394 0.97985 0.87774 1.20012 0.99401 0.89531 0.98548 1.27238 1.04872 1.06258 0.98061 1.84183 1.45706 1.00491 1.24195 1.24616 1.01478 0.95767 0.95464 1.19264 1.01794 0.87750 0.95560 1.22209 1.03113 0.95103 0.97517 1.22171 1.02333 0.97879 1.00894 1.25253 1.02332 0.87278 0.94039 1.84207 1.55522 1.20926 1.47632 1.66539 1.24745 1.09646 1.19654 0.94536 0.94831 0.92879 0.95466 0.92256 0.92891 0.85719 0.88825 0.96517 0.77589 0.80539 0.79272 0.74012 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -4.72 9.52 71.98 0.69 -4.03 16 2 C -0.10 -4.76 5.59 30.59 0.17 -4.59 16 3 C 0.22 11.51 2.30 44.17 0.10 11.61 16 4 H -0.04 -2.10 7.71 -2.38 -0.02 -2.12 16 5 C -0.53 -29.52 7.26 25.60 0.19 -29.33 16 6 H 0.05 2.90 7.60 -2.91 -0.02 2.88 16 7 C 0.02 1.06 5.30 84.65 0.45 1.51 16 8 N -0.91 -53.22 11.32 21.45 0.24 -52.98 16 9 Si 0.95 44.55 29.54 68.60 2.03 46.58 16 10 H -0.28 -12.85 7.11 99.48 0.71 -12.14 16 11 H -0.28 -12.75 7.11 99.48 0.71 -12.04 16 12 H -0.27 -12.30 7.11 99.48 0.71 -11.59 16 13 N -0.67 -29.88 5.64 -499.45 -2.82 -32.70 16 14 C 0.14 5.29 5.94 85.56 0.51 5.80 16 15 C 0.06 1.96 6.15 41.60 0.26 2.21 16 16 C -0.22 -5.89 11.06 66.79 0.74 -5.15 16 17 S 0.20 4.25 23.19 -56.49 -1.31 2.94 16 18 C 0.10 2.98 7.50 87.22 0.65 3.64 16 19 C 0.01 0.25 7.24 24.14 0.17 0.42 16 20 C -0.16 -2.91 10.64 22.43 0.24 -2.67 16 21 C -0.21 -3.09 10.88 22.11 0.24 -2.85 16 22 C -0.02 -0.33 12.08 67.03 0.81 0.48 16 23 O -0.19 -5.21 10.68 -6.92 -0.07 -5.29 16 24 N -0.49 -17.93 10.57 -178.35 -1.89 -19.82 16 25 H 0.04 1.41 8.14 -2.39 -0.02 1.39 16 26 H 0.03 1.61 7.07 -2.39 -0.02 1.59 16 27 H 0.05 2.18 7.74 -2.39 -0.02 2.16 16 28 H 0.03 1.20 7.60 -2.39 -0.02 1.18 16 29 H 0.06 3.25 6.07 -2.39 -0.01 3.24 16 30 H 0.26 14.49 8.31 -92.71 -0.77 13.72 16 31 H 0.33 15.45 8.13 -89.70 -0.73 14.72 16 32 H 0.09 3.33 7.55 -2.39 -0.02 3.31 16 33 H 0.02 0.72 7.94 -2.39 -0.02 0.70 16 34 H 0.21 4.28 8.06 -2.91 -0.02 4.26 16 35 H 0.18 2.27 8.06 -2.91 -0.02 2.25 16 36 H 0.19 1.32 8.06 -2.91 -0.02 1.30 16 37 H 0.24 1.88 8.06 -2.91 -0.02 1.85 16 Total: -1.00 -69.31 329.84 1.76 -67.55 By element: Atomic # 1 Polarization: 16.30 SS G_CDS: 0.36 Total: 16.66 kcal Atomic # 6 Polarization: -28.17 SS G_CDS: 5.21 Total: -22.96 kcal Atomic # 7 Polarization: -101.03 SS G_CDS: -4.46 Total: -105.49 kcal Atomic # 8 Polarization: -5.21 SS G_CDS: -0.07 Total: -5.29 kcal Atomic # 14 Polarization: 44.55 SS G_CDS: 2.03 Total: 46.58 kcal Atomic # 16 Polarization: 4.25 SS G_CDS: -1.31 Total: 2.94 kcal Total: -69.31 1.76 -67.55 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000564599293.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 108.662 kcal (2) G-P(sol) polarization free energy of solvation -69.312 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 39.350 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.760 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.552 kcal (6) G-S(sol) free energy of system = (1) + (5) 41.110 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds