Wall clock time and date at job start Tue Mar 31 2020 06:44:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.52997 * 109.47066 * 2 1 4 4 H 1.08995 * 109.47056 * 177.96613 * 3 2 1 5 5 C 1.50697 * 109.47043 * 57.96375 * 3 2 1 6 6 H 1.07996 * 119.99989 * 239.99841 * 5 3 2 7 7 C 1.37886 * 120.00003 * 60.00061 * 5 3 2 8 8 N 1.31512 * 119.99716 * 359.97438 * 7 5 3 9 9 Si 1.86799 * 119.99865 * 179.97438 * 7 5 3 10 10 H 1.48498 * 109.47371 * 0.02562 * 9 7 5 11 11 H 1.48500 * 109.46800 * 119.99769 * 9 7 5 12 12 H 1.48499 * 109.47040 * 239.99665 * 9 7 5 13 13 N 1.46897 * 109.46985 * 297.96416 * 3 2 1 14 14 C 1.46896 * 111.00277 * 273.74898 * 13 3 2 15 15 C 1.50698 * 109.47416 * 174.90559 * 14 13 3 16 16 C 1.33678 * 122.06559 * 94.99811 * 15 14 13 17 17 S 1.76245 * 108.26785 * 180.02562 * 16 15 14 18 18 C 1.76171 * 89.85470 * 0.02562 * 17 16 15 19 19 C 1.47110 * 125.48461 * 179.97438 * 18 17 16 20 20 C 1.36264 * 125.95633 * 359.97438 * 19 18 17 21 21 C 1.40783 * 106.71734 * 179.97438 * 20 19 18 22 22 C 1.34822 * 107.07646 * 359.97438 * 21 20 19 23 23 O 1.34274 * 108.72063 * 359.73517 * 22 21 20 24 24 N 1.30485 * 109.03306 * 359.74218 * 18 17 16 25 25 H 1.09008 * 109.47535 * 174.45191 * 1 2 3 26 26 H 1.08999 * 109.47409 * 54.45141 * 1 2 3 27 27 H 1.09000 * 109.47235 * 294.44675 * 1 2 3 28 28 H 1.09000 * 109.47143 * 120.00605 * 2 1 3 29 29 H 1.09003 * 109.46695 * 240.00293 * 2 1 3 30 30 H 0.97002 * 119.99671 * 179.97438 * 8 7 5 31 31 H 1.00904 * 110.99901 * 149.79459 * 13 3 2 32 32 H 1.09006 * 109.46730 * 294.90058 * 14 13 3 33 33 H 1.08996 * 109.47238 * 54.89521 * 14 13 3 34 34 H 1.08005 * 125.86801 * 0.02562 * 16 15 14 35 35 H 1.07992 * 126.64090 * 359.97438 * 20 19 18 36 36 H 1.08009 * 126.46223 * 180.02562 * 21 20 19 37 37 H 1.07999 * 125.63447 * 180.02562 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 3.1293 1.4427 0.0365 5 6 1.4968 2.1673 1.2044 6 1 0.8798 3.0440 1.0742 7 6 1.7877 1.7111 2.4727 8 7 2.5387 0.6432 2.6312 9 14 1.1150 2.6100 3.9657 10 1 0.3042 3.7716 3.5203 11 1 0.2630 1.6865 4.7570 12 1 2.2427 3.0860 4.8065 13 7 1.5909 2.1206 -1.2233 14 6 2.5281 1.8857 -2.3298 15 6 1.9736 2.4891 -3.5945 16 6 2.3137 3.7152 -4.0043 17 16 1.4602 4.0512 -5.5092 18 6 0.7081 2.4600 -5.4328 19 6 -0.2382 1.9145 -6.4183 20 6 -0.6808 2.5500 -7.5394 21 6 -1.5657 1.6649 -8.1840 22 6 -1.6203 0.5448 -7.4356 23 8 -0.8129 0.6964 -6.3735 24 7 1.1294 1.8411 -4.3641 25 1 -0.3634 -1.0229 -0.0994 26 1 -0.3634 0.5975 -0.8361 27 1 -0.3634 0.4253 0.9355 28 1 1.8933 -0.5139 0.8899 29 1 1.8933 -0.5138 -0.8901 30 1 2.7437 0.3226 3.5235 31 1 1.4615 3.1083 -1.0625 32 1 3.4877 2.3475 -2.0973 33 1 2.6651 0.8133 -2.4684 34 1 2.9945 4.3849 -3.4998 35 1 -0.4060 3.5408 -7.8696 36 1 -2.0995 1.8482 -9.1049 37 1 -2.2118 -0.3314 -7.6566 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000564599298.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:44:45 Heat of formation + Delta-G solvation = 62.333718 kcal Electronic energy + Delta-G solvation = -20212.134415 eV Core-core repulsion = 17083.175312 eV Total energy + Delta-G solvation = -3128.959102 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 292.099 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -42.68336 -39.59491 -36.17749 -33.38393 -32.98483 -31.58426 -30.42410 -28.87852 -26.87763 -25.29074 -23.93242 -23.03875 -22.06188 -20.93339 -19.28625 -18.97190 -18.34454 -17.18616 -16.30028 -16.26961 -15.64046 -14.96337 -14.47332 -14.17672 -13.93625 -13.46284 -13.21357 -13.13190 -13.10804 -12.82739 -12.63025 -12.25660 -11.83176 -11.70472 -11.08146 -10.92366 -10.66775 -10.36815 -10.25752 -10.06072 -9.80128 -9.76001 -9.64525 -9.31500 -9.17292 -8.75296 -8.47314 -8.09054 -7.25111 -6.01460 -4.06668 0.23774 1.02021 1.62086 1.71504 2.33801 2.93824 3.09149 3.28666 3.37108 3.40925 3.88289 4.41051 4.70521 4.71175 4.97412 5.20111 5.29517 5.33728 5.51952 5.54991 5.64271 5.73166 5.97211 6.07392 6.19738 6.33386 6.59703 6.79034 6.85724 6.92198 7.29922 7.33843 7.53633 7.77411 7.80046 7.82985 7.86874 8.26783 8.38025 8.65070 9.01939 9.57890 11.04596 Molecular weight = 292.10amu Principal moments of inertia in cm(-1) A = 0.023501 B = 0.003494 C = 0.003253 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1191.174060 B = 8011.886028 C = 8606.676144 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.118 4.118 2 C -0.101 4.101 3 C 0.217 3.783 4 H 0.002 0.998 5 C -0.512 4.512 6 H 0.059 0.941 7 C 0.064 3.936 8 N -0.888 5.888 9 Si 0.893 3.107 10 H -0.273 1.273 11 H -0.284 1.284 12 H -0.285 1.285 13 N -0.677 5.677 14 C 0.128 3.872 15 C 0.094 3.906 16 C -0.242 4.242 17 S 0.108 5.892 18 C 0.119 3.881 19 C 0.061 3.939 20 C -0.177 4.177 21 C -0.215 4.215 22 C -0.021 4.021 23 O -0.148 6.148 24 N -0.424 5.424 25 H 0.012 0.988 26 H 0.047 0.953 27 H 0.050 0.950 28 H 0.085 0.915 29 H 0.011 0.989 30 H 0.260 0.740 31 H 0.331 0.669 32 H 0.040 0.960 33 H 0.084 0.916 34 H 0.183 0.817 35 H 0.154 0.846 36 H 0.155 0.845 37 H 0.209 0.791 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.710 4.557 -20.570 21.393 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.176 4.176 2 C -0.140 4.140 3 C 0.110 3.890 4 H 0.020 0.980 5 C -0.550 4.550 6 H 0.077 0.923 7 C -0.138 4.138 8 N -0.527 5.527 9 Si 0.721 3.279 10 H -0.198 1.198 11 H -0.210 1.210 12 H -0.212 1.212 13 N -0.308 5.308 14 C -0.004 4.004 15 C -0.039 4.039 16 C -0.382 4.382 17 S 0.362 5.638 18 C -0.155 4.155 19 C 0.007 3.993 20 C -0.200 4.200 21 C -0.234 4.234 22 C -0.091 4.091 23 O -0.043 6.043 24 N -0.138 5.138 25 H 0.031 0.969 26 H 0.066 0.934 27 H 0.069 0.931 28 H 0.103 0.897 29 H 0.030 0.970 30 H 0.070 0.930 31 H 0.148 0.852 32 H 0.057 0.943 33 H 0.102 0.898 34 H 0.200 0.800 35 H 0.171 0.829 36 H 0.172 0.828 37 H 0.225 0.775 Dipole moment (debyes) X Y Z Total from point charges -4.172 4.061 -20.900 21.695 hybrid contribution 0.617 0.747 1.719 1.973 sum -3.554 4.808 -19.181 20.091 Atomic orbital electron populations 1.21424 0.97479 0.97192 1.01460 1.21415 0.95195 0.98041 0.99320 1.19147 0.93333 0.91762 0.84725 0.98042 1.21201 1.31613 1.11966 0.90270 0.92260 1.24880 0.95090 0.95016 0.98841 1.69901 1.37422 1.23060 1.22281 0.86521 0.78722 0.79788 0.82868 1.19789 1.20990 1.21160 1.60616 1.47082 1.16199 1.06907 1.20520 0.92979 1.00623 0.86303 1.20388 0.94852 0.90903 0.97745 1.26955 1.09268 1.01639 1.00293 1.84592 1.39845 1.16650 1.22692 1.24235 1.01292 0.94174 0.95839 1.18984 0.99175 0.85274 0.95839 1.21782 1.01385 1.01707 0.95082 1.21715 1.03981 0.94530 1.03149 1.24337 0.96580 1.01277 0.86951 1.84241 1.46917 1.31534 1.41560 1.66610 1.10546 1.34488 1.02134 0.96889 0.93354 0.93115 0.89667 0.97016 0.93008 0.85233 0.94253 0.89791 0.80025 0.82866 0.82759 0.77478 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -2.81 9.46 37.16 0.35 -2.46 16 2 C -0.10 -2.53 5.57 -26.73 -0.15 -2.68 16 3 C 0.22 5.42 2.30 -68.87 -0.16 5.27 16 4 H 0.00 0.05 7.84 -51.93 -0.41 -0.35 16 5 C -0.51 -13.73 7.34 -34.44 -0.25 -13.98 16 6 H 0.06 1.59 7.60 -52.49 -0.40 1.19 16 7 C 0.06 1.73 5.30 -17.82 -0.09 1.64 16 8 N -0.89 -25.10 11.34 55.43 0.63 -24.47 16 9 Si 0.89 21.18 29.54 -169.99 -5.02 16.16 16 10 H -0.27 -6.41 7.11 56.52 0.40 -6.01 16 11 H -0.28 -6.75 7.11 56.52 0.40 -6.35 16 12 H -0.29 -6.73 7.11 56.52 0.40 -6.33 16 13 N -0.68 -14.55 5.50 -109.23 -0.60 -15.15 16 14 C 0.13 2.38 5.86 -4.98 -0.03 2.35 16 15 C 0.09 1.59 6.24 -84.40 -0.53 1.06 16 16 C -0.24 -3.28 11.06 29.13 0.32 -2.96 16 17 S 0.11 1.27 23.19 -107.50 -2.49 -1.22 16 18 C 0.12 1.81 7.50 -14.53 -0.11 1.70 16 19 C 0.06 0.85 7.24 -36.69 -0.27 0.58 16 20 C -0.18 -1.87 10.64 -39.33 -0.42 -2.29 16 21 C -0.21 -1.90 10.88 -39.83 -0.43 -2.33 16 22 C -0.02 -0.20 12.08 29.52 0.36 0.16 16 23 O -0.15 -2.09 10.67 4.51 0.05 -2.04 16 24 N -0.42 -7.62 10.57 -7.73 -0.08 -7.70 16 25 H 0.01 0.27 8.14 -51.92 -0.42 -0.16 16 26 H 0.05 1.15 7.50 -51.93 -0.39 0.76 16 27 H 0.05 1.27 7.37 -51.93 -0.38 0.89 16 28 H 0.09 2.33 6.13 -51.93 -0.32 2.01 16 29 H 0.01 0.27 7.43 -51.93 -0.39 -0.12 16 30 H 0.26 7.02 8.31 -40.82 -0.34 6.68 16 31 H 0.33 6.91 8.24 -39.29 -0.32 6.59 16 32 H 0.04 0.68 8.08 -51.93 -0.42 0.26 16 33 H 0.08 1.66 7.39 -51.93 -0.38 1.28 16 34 H 0.18 2.01 8.06 -52.48 -0.42 1.59 16 35 H 0.15 1.28 8.06 -52.49 -0.42 0.85 16 36 H 0.15 0.90 8.06 -52.48 -0.42 0.48 16 37 H 0.21 1.10 8.06 -52.49 -0.42 0.67 16 LS Contribution 329.87 15.07 4.97 4.97 Total: -1.00 -30.86 329.87 -8.61 -39.47 By element: Atomic # 1 Polarization: 8.59 SS G_CDS: -4.66 Total: 3.93 kcal Atomic # 6 Polarization: -12.54 SS G_CDS: -1.41 Total: -13.95 kcal Atomic # 7 Polarization: -47.27 SS G_CDS: -0.05 Total: -47.32 kcal Atomic # 8 Polarization: -2.09 SS G_CDS: 0.05 Total: -2.04 kcal Atomic # 14 Polarization: 21.18 SS G_CDS: -5.02 Total: 16.16 kcal Atomic # 16 Polarization: 1.27 SS G_CDS: -2.49 Total: -1.22 kcal Total LS contribution 4.97 Total: 4.97 kcal Total: -30.86 -8.61 -39.47 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000564599298.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 101.804 kcal (2) G-P(sol) polarization free energy of solvation -30.856 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 70.948 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.615 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.470 kcal (6) G-S(sol) free energy of system = (1) + (5) 62.334 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds