Wall clock time and date at job start Tue Mar 31 2020 06:48:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53002 * 109.47538 * 2 1 4 4 N 1.46505 * 109.46792 * 239.99635 * 2 1 3 5 5 C 1.46500 * 119.99838 * 65.23631 * 4 2 1 6 6 C 1.50700 * 109.47387 * 95.28940 * 5 4 2 7 7 H 1.08001 * 119.99768 * 359.97438 * 6 5 4 8 8 C 1.37868 * 119.99856 * 179.97438 * 6 5 4 9 9 N 1.31520 * 120.00229 * 179.97438 * 8 6 5 10 10 Si 1.86796 * 120.00282 * 359.97438 * 8 6 5 11 11 H 1.48503 * 109.47547 * 89.99890 * 10 8 6 12 12 H 1.48502 * 109.47474 * 210.00156 * 10 8 6 13 13 H 1.48506 * 109.47309 * 329.99741 * 10 8 6 14 14 C 1.34777 * 119.99743 * 245.22565 * 4 2 1 15 15 O 1.21734 * 120.00308 * 4.56455 * 14 4 2 16 16 C 1.46452 * 119.99801 * 184.55307 * 14 4 2 17 17 C 1.37465 * 125.80890 * 187.05444 * 16 14 4 18 18 C 1.40660 * 107.55656 * 179.88685 * 17 16 14 19 19 S 1.76022 * 142.39131 * 180.02562 * 18 17 16 20 20 C 1.75596 * 91.30747 * 180.36235 * 19 18 17 21 21 C 1.32779 * 110.47373 * 359.97438 * 20 19 18 22 22 C 1.38240 * 108.03353 * 0.38208 * 18 17 16 23 23 N 1.37918 * 125.80768 * 7.36837 * 16 14 4 24 24 H 0.97007 * 125.68041 * 359.95402 * 23 16 14 25 25 H 1.09001 * 109.46869 * 59.99770 * 1 2 3 26 26 H 1.08999 * 109.47274 * 180.02562 * 1 2 3 27 27 H 1.09005 * 109.46770 * 300.00538 * 1 2 3 28 28 H 1.09001 * 109.46869 * 120.00230 * 2 1 3 29 29 H 1.08992 * 109.47283 * 59.99727 * 3 2 1 30 30 H 1.08997 * 109.47050 * 180.02562 * 3 2 1 31 31 H 1.08999 * 109.46722 * 299.99957 * 3 2 1 32 32 H 1.09003 * 109.46327 * 215.29011 * 5 4 2 33 33 H 1.09000 * 109.46740 * 335.28274 * 5 4 2 34 34 H 0.96990 * 120.00354 * 179.97438 * 9 8 6 35 35 H 1.08004 * 126.21759 * 359.97438 * 17 16 14 36 36 H 1.08001 * 124.76411 * 179.97438 * 20 19 18 37 37 H 1.07995 * 122.15729 * 180.02562 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 7 2.0183 -0.6907 -1.1962 5 6 1.7613 -0.1269 -2.5237 6 6 2.9481 0.6933 -2.9595 7 1 3.8076 0.7857 -2.3121 8 6 2.9365 1.3256 -4.1846 9 7 3.9720 2.0419 -4.5648 10 14 1.4502 1.1651 -5.3046 11 1 0.4882 2.2575 -5.0103 12 1 1.8856 1.2574 -6.7213 13 1 0.7950 -0.1473 -5.0727 14 6 2.7040 -1.8447 -1.0752 15 8 2.8462 -2.3564 0.0202 16 6 3.2779 -2.4832 -2.2617 17 6 3.8770 -3.7199 -2.2992 18 6 4.2859 -3.9533 -3.6246 19 16 5.0831 -5.1421 -4.6492 20 6 4.9154 -4.1027 -6.0545 21 6 4.3044 -2.9709 -5.7248 22 6 3.9383 -2.8492 -4.3804 23 7 3.3148 -1.9434 -3.5303 24 1 2.9638 -1.0762 -3.7867 25 1 -0.3633 0.5139 -0.8900 26 1 -0.3634 -1.0276 0.0005 27 1 -0.3633 0.5139 0.8900 28 1 1.8933 -0.5139 0.8900 29 1 1.6768 1.9563 0.8899 30 1 3.1301 1.4424 -0.0005 31 1 1.6768 1.9563 -0.8900 32 1 1.5971 -0.9354 -3.2361 33 1 0.8759 0.5076 -2.4838 34 1 3.9640 2.4864 -5.4267 35 1 4.0083 -4.3910 -1.4632 36 1 5.2608 -4.3493 -7.0476 37 1 4.1034 -2.1944 -6.4480 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000565517386.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:48:00 Heat of formation + Delta-G solvation = 48.368282 kcal Electronic energy + Delta-G solvation = -21785.303480 eV Core-core repulsion = 18655.738791 eV Total energy + Delta-G solvation = -3129.564689 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 292.099 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -40.94803 -38.94275 -36.14290 -34.94799 -33.39610 -31.84413 -30.13135 -28.31611 -27.59450 -26.76697 -23.36461 -22.91867 -22.30752 -20.09143 -19.70713 -18.56446 -17.44884 -17.40152 -16.23786 -15.62283 -14.98278 -14.93803 -14.40989 -13.92174 -13.75767 -13.68741 -13.40911 -13.12199 -12.83570 -12.58762 -12.46139 -11.95323 -11.93965 -11.74749 -11.36584 -11.26048 -11.14802 -10.96320 -10.86094 -10.52730 -10.47987 -10.34236 -9.91559 -9.49766 -9.24759 -9.09066 -8.06216 -7.55518 -7.17302 -6.60951 -4.67583 1.28062 1.96405 2.42786 2.46569 2.88430 2.95968 3.00645 3.26252 3.45839 3.79865 3.87898 3.96743 4.66584 5.08953 5.29344 5.42771 5.46950 5.50890 5.64064 5.84545 5.92444 5.96184 5.98750 6.09905 6.15673 6.19721 6.22723 6.34192 6.40529 6.44511 6.60903 6.85085 6.96412 6.99625 7.09048 7.35416 7.81298 8.06387 8.18469 8.51028 8.69616 8.91431 10.49055 Molecular weight = 292.10amu Principal moments of inertia in cm(-1) A = 0.013955 B = 0.007406 C = 0.005304 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2005.945050 B = 3779.857810 C = 5277.987280 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.160 4.160 2 C 0.136 3.864 3 C -0.153 4.153 4 N -0.584 5.584 5 C 0.189 3.811 6 C -0.560 4.560 7 H 0.091 0.909 8 C 0.080 3.920 9 N -0.862 5.862 10 Si 0.851 3.149 11 H -0.262 1.262 12 H -0.273 1.273 13 H -0.261 1.261 14 C 0.590 3.410 15 O -0.553 6.553 16 C 0.025 3.975 17 C -0.100 4.100 18 C -0.217 4.217 19 S 0.091 5.909 20 C -0.201 4.201 21 C -0.098 4.098 22 C 0.044 3.956 23 N -0.507 5.507 24 H 0.442 0.558 25 H 0.058 0.942 26 H 0.054 0.946 27 H 0.063 0.937 28 H 0.094 0.906 29 H 0.053 0.947 30 H 0.060 0.940 31 H 0.071 0.929 32 H 0.030 0.970 33 H 0.045 0.955 34 H 0.274 0.726 35 H 0.148 0.852 36 H 0.166 0.834 37 H 0.137 0.863 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.375 -6.649 -0.665 7.487 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.218 4.218 2 C 0.033 3.967 3 C -0.211 4.211 4 N -0.314 5.314 5 C 0.066 3.934 6 C -0.598 4.598 7 H 0.109 0.891 8 C -0.128 4.128 9 N -0.496 5.496 10 Si 0.675 3.325 11 H -0.187 1.187 12 H -0.198 1.198 13 H -0.185 1.185 14 C 0.379 3.621 15 O -0.432 6.432 16 C -0.094 4.094 17 C -0.132 4.132 18 C -0.337 4.337 19 S 0.348 5.652 20 C -0.337 4.337 21 C -0.131 4.131 22 C -0.076 4.076 23 N -0.123 5.123 24 H 0.304 0.696 25 H 0.077 0.923 26 H 0.073 0.927 27 H 0.082 0.918 28 H 0.112 0.888 29 H 0.072 0.928 30 H 0.079 0.921 31 H 0.090 0.910 32 H 0.048 0.952 33 H 0.063 0.937 34 H 0.084 0.916 35 H 0.166 0.834 36 H 0.184 0.816 37 H 0.154 0.846 Dipole moment (debyes) X Y Z Total from point charges -2.737 -7.882 -0.084 8.344 hybrid contribution -1.369 2.077 -1.280 2.798 sum -4.106 -5.805 -1.364 7.240 Atomic orbital electron populations 1.22155 0.95712 1.01891 1.02056 1.20973 0.93494 0.93742 0.88477 1.22068 1.02122 0.94980 1.01882 1.47860 1.53397 1.22004 1.08180 1.20125 0.98423 0.94628 0.80188 1.21517 1.02839 1.31343 1.04116 0.89140 1.24999 0.95862 0.94254 0.97693 1.69858 1.28932 1.29344 1.21467 0.87220 0.83702 0.80252 0.81319 1.18669 1.19801 1.18548 1.16985 0.77840 0.80445 0.86858 1.90754 1.61539 1.64607 1.26326 1.20251 1.08282 0.95509 0.85362 1.20202 1.03174 0.95734 0.94067 1.22538 1.12874 0.99590 0.98669 1.83485 1.63320 1.19664 0.98704 1.25017 1.08149 0.98123 1.02400 1.18977 1.02040 0.99028 0.93090 1.18547 1.04746 0.91805 0.92545 1.44630 1.44079 1.18086 1.05458 0.69636 0.92262 0.92666 0.91803 0.88830 0.92809 0.92109 0.90972 0.95246 0.93748 0.91555 0.83448 0.81625 0.84561 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.32 9.26 37.16 0.34 -1.97 16 2 C 0.14 2.37 3.21 -67.93 -0.22 2.15 16 3 C -0.15 -2.57 8.60 37.16 0.32 -2.25 16 4 N -0.58 -11.84 2.37 -169.07 -0.40 -12.24 16 5 C 0.19 3.97 2.96 -5.19 -0.02 3.96 16 6 C -0.56 -13.44 6.62 -34.44 -0.23 -13.67 16 7 H 0.09 2.49 8.06 -52.49 -0.42 2.07 16 8 C 0.08 1.96 5.12 -17.82 -0.09 1.87 16 9 N -0.86 -22.83 13.96 55.43 0.77 -22.05 16 10 Si 0.85 17.86 27.07 -169.99 -4.60 13.26 16 11 H -0.26 -5.41 7.11 56.52 0.40 -5.01 16 12 H -0.27 -5.72 7.11 56.52 0.40 -5.32 16 13 H -0.26 -5.25 6.54 56.52 0.37 -4.88 16 14 C 0.59 12.80 7.59 -12.95 -0.10 12.71 16 15 O -0.55 -12.58 16.22 5.16 0.08 -12.50 16 16 C 0.02 0.53 6.58 -82.10 -0.54 -0.01 16 17 C -0.10 -1.99 10.61 -38.95 -0.41 -2.40 16 18 C -0.22 -4.11 7.26 -38.67 -0.28 -4.39 16 19 S 0.09 1.36 23.31 -107.50 -2.51 -1.14 16 20 C -0.20 -2.88 11.13 28.86 0.32 -2.56 16 21 C -0.10 -1.67 10.16 -40.85 -0.42 -2.09 16 22 C 0.04 0.89 7.67 -84.01 -0.64 0.25 16 23 N -0.51 -10.98 4.88 -7.34 -0.04 -11.01 16 24 H 0.44 9.88 2.68 -40.82 -0.11 9.77 16 25 H 0.06 0.86 6.91 -51.93 -0.36 0.50 16 26 H 0.05 0.80 8.14 -51.93 -0.42 0.38 16 27 H 0.06 0.76 8.14 -51.93 -0.42 0.34 16 28 H 0.09 1.67 6.94 -51.93 -0.36 1.31 16 29 H 0.05 0.74 8.14 -51.93 -0.42 0.32 16 30 H 0.06 1.13 8.14 -51.93 -0.42 0.71 16 31 H 0.07 1.31 7.06 -51.93 -0.37 0.94 16 32 H 0.03 0.64 4.50 -51.93 -0.23 0.41 16 33 H 0.04 0.89 5.97 -51.93 -0.31 0.58 16 34 H 0.27 6.79 8.31 -40.82 -0.34 6.45 16 35 H 0.15 2.64 8.06 -52.48 -0.42 2.22 16 36 H 0.17 1.77 8.06 -52.49 -0.42 1.34 16 37 H 0.14 2.13 8.06 -52.49 -0.42 1.71 16 LS Contribution 312.51 15.07 4.71 4.71 Total: -1.00 -27.34 312.51 -8.23 -35.56 By element: Atomic # 1 Polarization: 18.12 SS G_CDS: -4.29 Total: 13.83 kcal Atomic # 6 Polarization: -6.46 SS G_CDS: -1.96 Total: -8.41 kcal Atomic # 7 Polarization: -45.65 SS G_CDS: 0.34 Total: -45.31 kcal Atomic # 8 Polarization: -12.58 SS G_CDS: 0.08 Total: -12.50 kcal Atomic # 14 Polarization: 17.86 SS G_CDS: -4.60 Total: 13.26 kcal Atomic # 16 Polarization: 1.36 SS G_CDS: -2.51 Total: -1.14 kcal Total LS contribution 4.71 Total: 4.71 kcal Total: -27.34 -8.23 -35.56 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000565517386.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 83.933 kcal (2) G-P(sol) polarization free energy of solvation -27.339 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 56.594 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.226 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.565 kcal (6) G-S(sol) free energy of system = (1) + (5) 48.368 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds