Wall clock time and date at job start Tue Mar 31 2020 06:47:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53002 * 109.47538 * 2 1 4 4 N 1.46505 * 109.46792 * 239.99635 * 2 1 3 5 5 C 1.46500 * 119.99838 * 65.23631 * 4 2 1 6 6 C 1.50700 * 109.47387 * 95.28940 * 5 4 2 7 7 H 1.08001 * 119.99768 * 359.97438 * 6 5 4 8 8 C 1.37868 * 119.99856 * 179.97438 * 6 5 4 9 9 N 1.31520 * 120.00229 * 179.97438 * 8 6 5 10 10 Si 1.86796 * 120.00282 * 359.97438 * 8 6 5 11 11 H 1.48503 * 109.47547 * 89.99890 * 10 8 6 12 12 H 1.48502 * 109.47474 * 210.00156 * 10 8 6 13 13 H 1.48506 * 109.47309 * 329.99741 * 10 8 6 14 14 C 1.34777 * 119.99743 * 245.22565 * 4 2 1 15 15 O 1.21734 * 120.00308 * 4.56455 * 14 4 2 16 16 C 1.46452 * 119.99801 * 184.55307 * 14 4 2 17 17 C 1.37465 * 125.80890 * 187.05444 * 16 14 4 18 18 C 1.40660 * 107.55656 * 179.88685 * 17 16 14 19 19 S 1.76022 * 142.39131 * 180.02562 * 18 17 16 20 20 C 1.75596 * 91.30747 * 180.36235 * 19 18 17 21 21 C 1.32779 * 110.47373 * 359.97438 * 20 19 18 22 22 C 1.38240 * 108.03353 * 0.38208 * 18 17 16 23 23 N 1.37918 * 125.80768 * 7.36837 * 16 14 4 24 24 H 0.97007 * 125.68041 * 359.95402 * 23 16 14 25 25 H 1.09001 * 109.46869 * 59.99770 * 1 2 3 26 26 H 1.08999 * 109.47274 * 180.02562 * 1 2 3 27 27 H 1.09005 * 109.46770 * 300.00538 * 1 2 3 28 28 H 1.09001 * 109.46869 * 120.00230 * 2 1 3 29 29 H 1.08992 * 109.47283 * 59.99727 * 3 2 1 30 30 H 1.08997 * 109.47050 * 180.02562 * 3 2 1 31 31 H 1.08999 * 109.46722 * 299.99957 * 3 2 1 32 32 H 1.09003 * 109.46327 * 215.29011 * 5 4 2 33 33 H 1.09000 * 109.46740 * 335.28274 * 5 4 2 34 34 H 0.96990 * 120.00354 * 179.97438 * 9 8 6 35 35 H 1.08004 * 126.21759 * 359.97438 * 17 16 14 36 36 H 1.08001 * 124.76411 * 179.97438 * 20 19 18 37 37 H 1.07995 * 122.15729 * 180.02562 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 7 2.0183 -0.6907 -1.1962 5 6 1.7613 -0.1269 -2.5237 6 6 2.9481 0.6933 -2.9595 7 1 3.8076 0.7857 -2.3121 8 6 2.9365 1.3256 -4.1846 9 7 3.9720 2.0419 -4.5648 10 14 1.4502 1.1651 -5.3046 11 1 0.4882 2.2575 -5.0103 12 1 1.8856 1.2574 -6.7213 13 1 0.7950 -0.1473 -5.0727 14 6 2.7040 -1.8447 -1.0752 15 8 2.8462 -2.3564 0.0202 16 6 3.2779 -2.4832 -2.2617 17 6 3.8770 -3.7199 -2.2992 18 6 4.2859 -3.9533 -3.6246 19 16 5.0831 -5.1421 -4.6492 20 6 4.9154 -4.1027 -6.0545 21 6 4.3044 -2.9709 -5.7248 22 6 3.9383 -2.8492 -4.3804 23 7 3.3148 -1.9434 -3.5303 24 1 2.9638 -1.0762 -3.7867 25 1 -0.3633 0.5139 -0.8900 26 1 -0.3634 -1.0276 0.0005 27 1 -0.3633 0.5139 0.8900 28 1 1.8933 -0.5139 0.8900 29 1 1.6768 1.9563 0.8899 30 1 3.1301 1.4424 -0.0005 31 1 1.6768 1.9563 -0.8900 32 1 1.5971 -0.9354 -3.2361 33 1 0.8759 0.5076 -2.4838 34 1 3.9640 2.4864 -5.4267 35 1 4.0083 -4.3910 -1.4632 36 1 5.2608 -4.3493 -7.0476 37 1 4.1034 -2.1944 -6.4480 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000565517386.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:47:59 Heat of formation + Delta-G solvation = 33.117668 kcal Electronic energy + Delta-G solvation = -21785.964797 eV Core-core repulsion = 18655.738791 eV Total energy + Delta-G solvation = -3130.226005 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 292.099 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -42.47374 -40.51079 -37.78053 -36.32305 -35.13708 -33.42629 -31.67897 -30.07441 -29.04990 -28.04822 -24.98490 -24.53058 -23.69393 -21.61575 -21.15204 -20.08598 -19.28881 -18.97782 -17.76989 -17.15382 -16.61047 -16.33715 -16.08607 -15.30416 -15.26267 -15.07081 -14.98871 -14.69113 -14.48540 -13.99804 -13.81166 -13.59900 -13.41261 -13.05074 -12.84221 -12.75649 -12.60768 -12.43407 -12.37819 -12.08404 -11.86338 -11.75786 -11.66938 -11.17328 -10.99097 -10.64729 -9.69744 -8.99079 -8.52485 -8.50619 -6.61816 -0.12445 0.67056 0.91194 1.16952 1.23729 1.27360 1.33312 1.84590 1.92063 2.11555 2.23430 2.37934 2.80507 3.55539 3.99459 4.02270 4.09170 4.17819 4.27456 4.37602 4.46065 4.54791 4.61881 4.73463 4.77411 4.78162 4.92791 4.98820 5.03381 5.10930 5.13896 5.30012 5.42105 5.53078 5.58051 5.83889 5.97478 6.34817 6.49255 6.60392 6.97002 7.08032 8.63369 Molecular weight = 292.10amu Principal moments of inertia in cm(-1) A = 0.013955 B = 0.007406 C = 0.005304 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2005.945050 B = 3779.857810 C = 5277.987280 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C 0.126 3.874 3 C -0.143 4.143 4 N -0.585 5.585 5 C 0.198 3.802 6 C -0.549 4.549 7 H 0.041 0.959 8 C 0.037 3.963 9 N -0.911 5.911 10 Si 0.908 3.092 11 H -0.250 1.250 12 H -0.270 1.270 13 H -0.246 1.246 14 C 0.582 3.418 15 O -0.574 6.574 16 C -0.012 4.012 17 C -0.097 4.097 18 C -0.247 4.247 19 S 0.146 5.854 20 C -0.166 4.166 21 C -0.138 4.138 22 C 0.033 3.967 23 N -0.527 5.527 24 H 0.437 0.563 25 H 0.060 0.940 26 H 0.053 0.947 27 H 0.095 0.905 28 H 0.087 0.913 29 H 0.090 0.910 30 H 0.030 0.970 31 H 0.057 0.943 32 H 0.031 0.969 33 H 0.062 0.938 34 H 0.276 0.724 35 H 0.159 0.841 36 H 0.212 0.788 37 H 0.146 0.854 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.564 -7.998 -2.060 9.436 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C 0.024 3.976 3 C -0.201 4.201 4 N -0.315 5.315 5 C 0.075 3.925 6 C -0.587 4.587 7 H 0.059 0.941 8 C -0.167 4.167 9 N -0.547 5.547 10 Si 0.729 3.271 11 H -0.174 1.174 12 H -0.195 1.195 13 H -0.170 1.170 14 C 0.372 3.628 15 O -0.455 6.455 16 C -0.129 4.129 17 C -0.129 4.129 18 C -0.366 4.366 19 S 0.404 5.596 20 C -0.302 4.302 21 C -0.171 4.171 22 C -0.089 4.089 23 N -0.142 5.142 24 H 0.296 0.704 25 H 0.079 0.921 26 H 0.072 0.928 27 H 0.113 0.887 28 H 0.105 0.895 29 H 0.108 0.892 30 H 0.049 0.951 31 H 0.077 0.923 32 H 0.049 0.951 33 H 0.080 0.920 34 H 0.086 0.914 35 H 0.177 0.823 36 H 0.229 0.771 37 H 0.163 0.837 Dipole moment (debyes) X Y Z Total from point charges -3.939 -9.243 -1.443 10.151 hybrid contribution -0.834 2.381 -0.866 2.667 sum -4.772 -6.863 -2.309 8.672 Atomic orbital electron populations 1.22096 0.92789 1.02350 1.03671 1.21260 0.95806 0.93363 0.87136 1.21987 1.00117 0.95046 1.02944 1.47980 1.53036 1.21696 1.08776 1.19970 0.97541 0.94273 0.80674 1.21366 1.02321 1.31577 1.03482 0.94079 1.25685 0.98465 0.93596 0.98917 1.69990 1.31345 1.31087 1.22278 0.86293 0.80362 0.81177 0.79231 1.17413 1.19508 1.16972 1.17188 0.77862 0.80852 0.86907 1.90713 1.62548 1.65330 1.26938 1.20374 1.10384 0.96616 0.85487 1.20440 1.02099 0.95272 0.95048 1.22947 1.13869 1.01211 0.98598 1.83327 1.61386 1.17626 0.97255 1.25649 1.04287 0.96243 1.04031 1.19180 1.04802 1.00975 0.92151 1.19205 1.04075 0.91650 0.93922 1.44519 1.45439 1.18319 1.05926 0.70427 0.92111 0.92782 0.88671 0.89463 0.89152 0.95122 0.92347 0.95109 0.91972 0.91395 0.82318 0.77140 0.83682 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -4.10 9.26 71.98 0.67 -3.43 16 2 C 0.13 4.40 3.21 44.99 0.14 4.54 16 3 C -0.14 -4.85 8.60 71.98 0.62 -4.23 16 4 N -0.59 -24.31 2.37 -807.03 -1.92 -26.22 16 5 C 0.20 8.43 2.96 85.63 0.25 8.68 16 6 C -0.55 -27.39 6.62 25.60 0.17 -27.22 16 7 H 0.04 2.42 8.06 -2.91 -0.02 2.40 16 8 C 0.04 1.86 5.12 84.65 0.43 2.29 16 9 N -0.91 -49.85 13.96 21.44 0.30 -49.55 16 10 Si 0.91 36.39 27.07 68.60 1.86 38.25 16 11 H -0.25 -9.54 7.11 99.48 0.71 -8.83 16 12 H -0.27 -10.68 7.11 99.48 0.71 -9.97 16 13 H -0.25 -9.21 6.54 99.48 0.65 -8.56 16 14 C 0.58 26.21 7.59 86.38 0.66 26.86 16 15 O -0.57 -26.98 16.22 -4.46 -0.07 -27.05 16 16 C -0.01 -0.52 6.58 40.14 0.26 -0.26 16 17 C -0.10 -3.89 10.61 22.68 0.24 -3.65 16 18 C -0.25 -9.19 7.26 22.86 0.17 -9.02 16 19 S 0.15 3.95 23.31 -56.49 -1.32 2.63 16 20 C -0.17 -4.13 11.13 66.64 0.74 -3.39 16 21 C -0.14 -4.47 10.16 21.49 0.22 -4.25 16 22 C 0.03 1.30 7.67 38.40 0.29 1.60 16 23 N -0.53 -23.40 4.88 -177.15 -0.87 -24.26 16 24 H 0.44 20.01 2.68 -92.70 -0.25 19.76 16 25 H 0.06 1.63 6.91 -2.39 -0.02 1.61 16 26 H 0.05 1.48 8.14 -2.39 -0.02 1.46 16 27 H 0.09 1.98 8.14 -2.38 -0.02 1.96 16 28 H 0.09 3.15 6.94 -2.39 -0.02 3.13 16 29 H 0.09 2.36 8.14 -2.39 -0.02 2.34 16 30 H 0.03 1.19 8.14 -2.39 -0.02 1.17 16 31 H 0.06 2.13 7.06 -2.39 -0.02 2.11 16 32 H 0.03 1.35 4.50 -2.39 -0.01 1.34 16 33 H 0.06 2.43 5.97 -2.39 -0.01 2.41 16 34 H 0.28 14.06 8.31 -92.72 -0.77 13.29 16 35 H 0.16 5.75 8.06 -2.91 -0.02 5.73 16 36 H 0.21 3.27 8.06 -2.91 -0.02 3.25 16 37 H 0.15 4.34 8.06 -2.91 -0.02 4.31 16 Total: -1.00 -62.41 312.51 3.65 -58.76 By element: Atomic # 1 Polarization: 38.13 SS G_CDS: 0.80 Total: 38.93 kcal Atomic # 6 Polarization: -16.36 SS G_CDS: 4.87 Total: -11.49 kcal Atomic # 7 Polarization: -97.55 SS G_CDS: -2.48 Total: -100.03 kcal Atomic # 8 Polarization: -26.98 SS G_CDS: -0.07 Total: -27.05 kcal Atomic # 14 Polarization: 36.39 SS G_CDS: 1.86 Total: 38.25 kcal Atomic # 16 Polarization: 3.95 SS G_CDS: -1.32 Total: 2.63 kcal Total: -62.41 3.65 -58.76 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000565517386.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 91.877 kcal (2) G-P(sol) polarization free energy of solvation -62.413 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 29.464 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.653 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.759 kcal (6) G-S(sol) free energy of system = (1) + (5) 33.118 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds