Wall clock time and date at job start Tue Mar 31 2020 06:22:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31622 * 1 3 3 Si 1.86800 * 120.00149 * 2 1 4 4 H 1.48501 * 109.46810 * 269.99975 * 3 2 1 5 5 H 1.48498 * 109.47117 * 29.99510 * 3 2 1 6 6 H 1.48503 * 109.47333 * 149.99910 * 3 2 1 7 7 C 1.38800 * 119.99922 * 179.97438 * 2 1 3 8 8 H 1.08002 * 120.00202 * 359.97438 * 7 2 1 9 9 S 1.76202 * 119.99971 * 180.02562 * 7 2 1 10 10 C 1.80998 * 99.99844 * 179.97438 * 9 7 2 11 11 C 1.50701 * 109.46973 * 180.02562 * 10 9 7 12 12 O 1.21288 * 120.00095 * 359.97438 * 11 10 9 13 13 N 1.34781 * 120.00374 * 180.02562 * 11 10 9 14 14 C 1.47026 * 125.64203 * 0.02595 * 13 11 10 15 15 C 1.54321 * 107.26791 * 181.03648 * 14 13 11 16 16 C 1.55448 * 102.96961 * 22.19024 * 15 14 13 17 17 H 1.09004 * 111.00873 * 82.52495 * 16 15 14 18 18 C 1.50700 * 111.11612 * 206.45980 * 16 15 14 19 19 C 1.38652 * 120.78851 * 53.28317 * 18 16 15 20 20 C 1.38207 * 119.16205 * 179.75245 * 19 18 16 21 21 N 1.31869 * 120.76300 * 0.52562 * 20 19 18 22 22 C 1.31873 * 121.72650 * 359.74607 * 21 20 19 23 23 C 1.38203 * 120.76508 * 359.97438 * 22 21 20 24 24 C 1.47419 * 125.65221 * 179.97438 * 13 11 10 25 25 H 0.97007 * 120.00027 * 0.02562 * 1 2 3 26 26 H 1.09001 * 109.47306 * 60.00350 * 10 9 7 27 27 H 1.08995 * 109.47471 * 299.99599 * 10 9 7 28 28 H 1.08998 * 109.88266 * 300.45023 * 14 13 11 29 29 H 1.09000 * 109.88221 * 61.61840 * 14 13 11 30 30 H 1.08998 * 110.71927 * 140.55469 * 15 14 13 31 31 H 1.08998 * 110.72073 * 263.64892 * 15 14 13 32 32 H 1.08009 * 120.41823 * 359.97438 * 19 18 16 33 33 H 1.08001 * 119.61866 * 180.29100 * 20 19 18 34 34 H 1.07997 * 119.61959 * 179.97438 * 22 21 20 35 35 H 1.08001 * 120.42027 * 180.02562 * 23 22 21 36 36 H 1.09002 * 110.36926 * 274.73432 * 24 13 11 37 37 H 1.08995 * 110.36556 * 36.94716 * 24 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2503 1.6177 0.0000 4 1 2.4977 2.0463 -1.4001 5 1 1.4477 2.6527 0.6999 6 1 3.5478 1.4402 0.7001 7 6 2.0102 -1.2020 0.0005 8 1 1.4702 -2.1374 0.0014 9 16 3.7722 -1.2021 0.0012 10 6 4.0865 -2.9846 0.0025 11 6 5.5729 -3.2326 0.0039 12 8 6.3440 -2.2963 0.0035 13 7 6.0456 -4.4947 0.0045 14 6 5.2272 -5.7161 0.0034 15 6 6.1962 -6.9169 0.0314 16 6 7.4973 -6.3016 0.6187 17 1 7.4528 -6.2591 1.7070 18 6 8.7136 -7.0636 0.1593 19 6 8.9414 -7.2904 -1.1894 20 6 10.0705 -7.9888 -1.5736 21 7 10.9195 -8.4459 -0.6740 22 6 10.7320 -8.2537 0.6172 23 6 9.6285 -7.5594 1.0756 24 6 7.4688 -4.8793 0.0053 25 1 -0.4850 0.8401 -0.0004 26 1 3.6439 -3.4322 -0.8873 27 1 3.6433 -3.4310 0.8926 28 1 4.5881 -5.7349 0.8862 29 1 4.6173 -5.7529 -0.8992 30 1 5.8151 -7.7049 0.6809 31 1 6.3671 -7.2980 -0.9754 32 1 8.2472 -6.9228 -1.9307 33 1 10.2577 -8.1656 -2.6224 34 1 11.4490 -8.6435 1.3245 35 1 9.4806 -7.4049 2.1343 36 1 7.8575 -4.8971 -1.0128 37 1 8.0477 -4.1897 0.6196 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000565861802.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:22:07 Heat of formation + Delta-G solvation = -0.938040 kcal Electronic energy + Delta-G solvation = -19894.480966 eV Core-core repulsion = 16762.778195 eV Total energy + Delta-G solvation = -3131.702772 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 292.099 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -40.83841 -39.66112 -37.47111 -33.95118 -32.46188 -31.59969 -30.96655 -29.82367 -28.31775 -25.65052 -24.41886 -23.82108 -22.95668 -20.82817 -19.49083 -17.79764 -17.52364 -16.83649 -16.47755 -15.95239 -15.82207 -15.17780 -14.93336 -14.42657 -14.26272 -14.01177 -13.97006 -13.67977 -13.40350 -12.97220 -12.81580 -12.60994 -12.16980 -12.07102 -11.89577 -11.71726 -11.28318 -11.06930 -11.01974 -10.64234 -9.91337 -9.84978 -9.82139 -9.57624 -9.50872 -9.02406 -8.66379 -8.52658 -6.94939 -6.31014 -4.03139 0.77582 0.84620 2.63259 2.88350 3.14818 3.31746 3.41936 3.49048 3.56664 4.04612 4.12746 4.19918 4.24758 4.31755 4.51786 4.69008 4.71202 4.75626 4.77794 4.98276 5.01762 5.08098 5.15264 5.27115 5.35844 5.43721 5.48530 5.57153 5.60746 5.63296 5.70731 5.79671 5.97672 6.01603 6.24084 6.33512 7.49449 7.62151 7.91996 8.36820 8.39323 9.15126 10.78155 Molecular weight = 292.10amu Principal moments of inertia in cm(-1) A = 0.045914 B = 0.002802 C = 0.002729 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 609.690430 B = 9991.534373 C =10258.718903 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.880 5.880 2 C 0.096 3.904 3 Si 0.857 3.143 4 H -0.267 1.267 5 H -0.274 1.274 6 H -0.235 1.235 7 C -0.521 4.521 8 H 0.088 0.912 9 S -0.143 6.143 10 C -0.117 4.117 11 C 0.547 3.453 12 O -0.517 6.517 13 N -0.625 5.625 14 C 0.100 3.900 15 C -0.121 4.121 16 C -0.068 4.068 17 H 0.099 0.901 18 C -0.024 4.024 19 C -0.167 4.167 20 C 0.100 3.900 21 N -0.490 5.490 22 C 0.099 3.901 23 C -0.167 4.167 24 C 0.119 3.881 25 H 0.271 0.729 26 H 0.096 0.904 27 H 0.097 0.903 28 H 0.073 0.927 29 H 0.074 0.926 30 H 0.086 0.914 31 H 0.081 0.919 32 H 0.136 0.864 33 H 0.156 0.844 34 H 0.155 0.845 35 H 0.136 0.864 36 H 0.069 0.931 37 H 0.081 0.919 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 16.732 -19.109 0.616 25.407 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.516 5.516 2 C -0.113 4.113 3 Si 0.681 3.319 4 H -0.192 1.192 5 H -0.199 1.199 6 H -0.159 1.159 7 C -0.668 4.668 8 H 0.106 0.894 9 S 0.084 5.916 10 C -0.268 4.268 11 C 0.336 3.664 12 O -0.391 6.391 13 N -0.363 5.363 14 C -0.024 4.024 15 C -0.159 4.159 16 C -0.087 4.087 17 H 0.117 0.883 18 C -0.033 4.033 19 C -0.187 4.187 20 C -0.056 4.056 21 N -0.199 5.199 22 C -0.057 4.057 23 C -0.187 4.187 24 C -0.005 4.005 25 H 0.081 0.919 26 H 0.115 0.885 27 H 0.115 0.885 28 H 0.092 0.908 29 H 0.092 0.908 30 H 0.105 0.895 31 H 0.100 0.900 32 H 0.154 0.846 33 H 0.173 0.827 34 H 0.173 0.827 35 H 0.154 0.846 36 H 0.087 0.913 37 H 0.099 0.901 Dipole moment (debyes) X Y Z Total from point charges 18.389 -17.973 0.334 25.715 hybrid contribution -1.645 0.081 0.261 1.667 sum 16.744 -17.892 0.596 24.512 Atomic orbital electron populations 1.69935 1.05908 1.27792 1.48012 1.24710 0.94456 0.98974 0.93161 0.86736 0.81903 0.83267 0.79961 1.19188 1.19913 1.15912 1.22298 0.88157 0.97539 1.58856 0.89374 1.84806 1.09408 0.99982 1.97427 1.23252 0.93523 1.04279 1.05719 1.20017 0.90626 0.80549 0.75218 1.90715 1.58882 1.41180 1.48300 1.48453 1.06752 1.05405 1.75678 1.22058 0.94149 0.83468 1.02694 1.22811 0.93614 0.97215 1.02294 1.21449 0.91850 0.94068 1.01318 0.88268 1.20015 0.94863 0.94947 0.93470 1.22067 0.99577 1.00763 0.96275 1.22779 0.90006 0.93373 0.99454 1.67685 1.30111 1.19484 1.02628 1.22774 0.95740 0.94883 0.92345 1.22095 0.95697 1.00012 1.00899 1.22170 0.83492 0.93822 1.00970 0.91915 0.88531 0.88493 0.90827 0.90780 0.89510 0.90049 0.84590 0.82684 0.82726 0.84644 0.91308 0.90069 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.88 -26.43 13.97 55.49 0.78 -25.65 16 2 C 0.10 2.79 5.50 -17.43 -0.10 2.69 16 3 Si 0.86 21.72 27.74 -169.99 -4.72 17.01 16 4 H -0.27 -6.69 7.11 56.52 0.40 -6.29 16 5 H -0.27 -6.68 7.11 56.52 0.40 -6.28 16 6 H -0.24 -5.96 6.74 56.52 0.38 -5.58 16 7 C -0.52 -14.93 10.04 30.94 0.31 -14.62 16 8 H 0.09 2.62 8.03 -52.49 -0.42 2.20 16 9 S -0.14 -3.62 18.55 -107.50 -1.99 -5.61 16 10 C -0.12 -2.28 5.35 36.01 0.19 -2.08 16 11 C 0.55 9.93 7.87 -10.98 -0.09 9.84 16 12 O -0.52 -11.34 16.12 5.55 0.09 -11.25 16 13 N -0.63 -8.27 3.33 -170.51 -0.57 -8.84 16 14 C 0.10 0.94 6.49 -3.06 -0.02 0.92 16 15 C -0.12 -0.83 6.37 -24.74 -0.16 -0.98 16 16 C -0.07 -0.52 3.30 -89.46 -0.30 -0.82 16 17 H 0.10 0.72 8.03 -51.93 -0.42 0.30 16 18 C -0.02 -0.19 5.02 -104.32 -0.52 -0.71 16 19 C -0.17 -1.25 8.42 -39.44 -0.33 -1.58 16 20 C 0.10 0.81 11.18 -17.55 -0.20 0.61 16 21 N -0.49 -4.65 10.36 -13.25 -0.14 -4.79 16 22 C 0.10 0.77 11.18 -17.55 -0.20 0.57 16 23 C -0.17 -1.19 9.79 -39.44 -0.39 -1.58 16 24 C 0.12 1.30 6.32 -2.52 -0.02 1.28 16 25 H 0.27 7.56 8.31 -40.82 -0.34 7.22 16 26 H 0.10 1.75 8.14 -51.92 -0.42 1.32 16 27 H 0.10 1.75 8.14 -51.92 -0.42 1.33 16 28 H 0.07 0.67 8.14 -51.93 -0.42 0.24 16 29 H 0.07 0.67 8.14 -51.93 -0.42 0.25 16 30 H 0.09 0.47 8.14 -51.93 -0.42 0.05 16 31 H 0.08 0.50 6.85 -51.93 -0.36 0.14 16 32 H 0.14 0.85 7.17 -52.48 -0.38 0.47 16 33 H 0.16 0.89 8.06 -52.49 -0.42 0.46 16 34 H 0.16 0.81 8.06 -52.49 -0.42 0.39 16 35 H 0.14 0.70 8.04 -52.49 -0.42 0.27 16 36 H 0.07 0.73 7.17 -51.93 -0.37 0.36 16 37 H 0.08 1.00 8.03 -51.93 -0.42 0.58 16 LS Contribution 326.28 15.07 4.92 4.92 Total: -1.00 -34.88 326.28 -8.33 -43.21 By element: Atomic # 1 Polarization: 2.35 SS G_CDS: -4.90 Total: -2.55 kcal Atomic # 6 Polarization: -4.65 SS G_CDS: -1.80 Total: -6.45 kcal Atomic # 7 Polarization: -39.35 SS G_CDS: 0.07 Total: -39.28 kcal Atomic # 8 Polarization: -11.34 SS G_CDS: 0.09 Total: -11.25 kcal Atomic # 14 Polarization: 21.72 SS G_CDS: -4.72 Total: 17.01 kcal Atomic # 16 Polarization: -3.62 SS G_CDS: -1.99 Total: -5.61 kcal Total LS contribution 4.92 Total: 4.92 kcal Total: -34.88 -8.33 -43.21 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000565861802.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 42.269 kcal (2) G-P(sol) polarization free energy of solvation -34.878 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 7.392 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.330 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.207 kcal (6) G-S(sol) free energy of system = (1) + (5) -0.938 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds