Wall clock time and date at job start Tue Mar 31 2020 06:22:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31622 * 1 3 3 Si 1.86800 * 120.00149 * 2 1 4 4 H 1.48501 * 109.46810 * 269.99975 * 3 2 1 5 5 H 1.48498 * 109.47117 * 29.99510 * 3 2 1 6 6 H 1.48503 * 109.47333 * 149.99910 * 3 2 1 7 7 C 1.38800 * 119.99922 * 179.97438 * 2 1 3 8 8 H 1.08002 * 120.00202 * 359.97438 * 7 2 1 9 9 S 1.76202 * 119.99971 * 180.02562 * 7 2 1 10 10 C 1.80998 * 99.99844 * 179.97438 * 9 7 2 11 11 C 1.50701 * 109.46973 * 180.02562 * 10 9 7 12 12 O 1.21288 * 120.00095 * 359.97438 * 11 10 9 13 13 N 1.34781 * 120.00374 * 180.02562 * 11 10 9 14 14 C 1.47026 * 125.64203 * 0.02595 * 13 11 10 15 15 C 1.54321 * 107.26791 * 181.03648 * 14 13 11 16 16 C 1.55448 * 102.96961 * 22.19024 * 15 14 13 17 17 H 1.09004 * 111.00873 * 82.52495 * 16 15 14 18 18 C 1.50700 * 111.11612 * 206.45980 * 16 15 14 19 19 C 1.38652 * 120.78851 * 53.28317 * 18 16 15 20 20 C 1.38207 * 119.16205 * 179.75245 * 19 18 16 21 21 N 1.31869 * 120.76300 * 0.52562 * 20 19 18 22 22 C 1.31873 * 121.72650 * 359.74607 * 21 20 19 23 23 C 1.38203 * 120.76508 * 359.97438 * 22 21 20 24 24 C 1.47419 * 125.65221 * 179.97438 * 13 11 10 25 25 H 0.97007 * 120.00027 * 0.02562 * 1 2 3 26 26 H 1.09001 * 109.47306 * 60.00350 * 10 9 7 27 27 H 1.08995 * 109.47471 * 299.99599 * 10 9 7 28 28 H 1.08998 * 109.88266 * 300.45023 * 14 13 11 29 29 H 1.09000 * 109.88221 * 61.61840 * 14 13 11 30 30 H 1.08998 * 110.71927 * 140.55469 * 15 14 13 31 31 H 1.08998 * 110.72073 * 263.64892 * 15 14 13 32 32 H 1.08009 * 120.41823 * 359.97438 * 19 18 16 33 33 H 1.08001 * 119.61866 * 180.29100 * 20 19 18 34 34 H 1.07997 * 119.61959 * 179.97438 * 22 21 20 35 35 H 1.08001 * 120.42027 * 180.02562 * 23 22 21 36 36 H 1.09002 * 110.36926 * 274.73432 * 24 13 11 37 37 H 1.08995 * 110.36556 * 36.94716 * 24 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2503 1.6177 0.0000 4 1 2.4977 2.0463 -1.4001 5 1 1.4477 2.6527 0.6999 6 1 3.5478 1.4402 0.7001 7 6 2.0102 -1.2020 0.0005 8 1 1.4702 -2.1374 0.0014 9 16 3.7722 -1.2021 0.0012 10 6 4.0865 -2.9846 0.0025 11 6 5.5729 -3.2326 0.0039 12 8 6.3440 -2.2963 0.0035 13 7 6.0456 -4.4947 0.0045 14 6 5.2272 -5.7161 0.0034 15 6 6.1962 -6.9169 0.0314 16 6 7.4973 -6.3016 0.6187 17 1 7.4528 -6.2591 1.7070 18 6 8.7136 -7.0636 0.1593 19 6 8.9414 -7.2904 -1.1894 20 6 10.0705 -7.9888 -1.5736 21 7 10.9195 -8.4459 -0.6740 22 6 10.7320 -8.2537 0.6172 23 6 9.6285 -7.5594 1.0756 24 6 7.4688 -4.8793 0.0053 25 1 -0.4850 0.8401 -0.0004 26 1 3.6439 -3.4322 -0.8873 27 1 3.6433 -3.4310 0.8926 28 1 4.5881 -5.7349 0.8862 29 1 4.6173 -5.7529 -0.8992 30 1 5.8151 -7.7049 0.6809 31 1 6.3671 -7.2980 -0.9754 32 1 8.2472 -6.9228 -1.9307 33 1 10.2577 -8.1656 -2.6224 34 1 11.4490 -8.6435 1.3245 35 1 9.4806 -7.4049 2.1343 36 1 7.8575 -4.8971 -1.0128 37 1 8.0477 -4.1897 0.6196 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000565861802.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:22:06 Heat of formation + Delta-G solvation = -23.576810 kcal Electronic energy + Delta-G solvation = -19895.462657 eV Core-core repulsion = 16762.778195 eV Total energy + Delta-G solvation = -3132.684462 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 292.099 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -41.55654 -40.68216 -38.55981 -34.79860 -34.67799 -32.19117 -31.93093 -30.87559 -29.31905 -27.86272 -25.26049 -24.44449 -23.68285 -21.48636 -20.79351 -19.63071 -18.28856 -18.07494 -17.25466 -17.12126 -16.86634 -16.53221 -16.29994 -15.70874 -15.50169 -14.91469 -14.87100 -14.62160 -14.43804 -14.26739 -13.99242 -13.67721 -13.36172 -13.32833 -13.02712 -12.76677 -12.69323 -12.55209 -12.39685 -11.88005 -11.66248 -11.18187 -11.08862 -10.55687 -10.45638 -10.39982 -10.05651 -9.76053 -9.02522 -8.52596 -6.23994 0.23750 0.26704 0.94794 1.30588 1.44246 1.47523 1.52178 2.01484 2.24082 2.66322 2.84399 2.85659 3.39345 3.43711 3.59488 3.64189 3.85510 3.94669 4.10959 4.17434 4.23814 4.25443 4.27455 4.38164 4.39873 4.62230 4.75026 4.79051 4.82319 4.94537 4.97982 5.06911 5.12238 5.28888 5.44807 5.69846 5.80838 6.10365 6.30089 6.92558 7.01128 7.06754 8.59688 Molecular weight = 292.10amu Principal moments of inertia in cm(-1) A = 0.045914 B = 0.002802 C = 0.002729 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 609.690430 B = 9991.534373 C =10258.718903 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.916 5.916 2 C 0.046 3.954 3 Si 0.913 3.087 4 H -0.262 1.262 5 H -0.258 1.258 6 H -0.237 1.237 7 C -0.527 4.527 8 H 0.064 0.936 9 S -0.178 6.178 10 C -0.101 4.101 11 C 0.547 3.453 12 O -0.565 6.565 13 N -0.615 5.615 14 C 0.088 3.912 15 C -0.110 4.110 16 C -0.053 4.053 17 H 0.109 0.891 18 C -0.031 4.031 19 C -0.169 4.169 20 C 0.088 3.912 21 N -0.518 5.518 22 C 0.088 3.912 23 C -0.167 4.167 24 C 0.113 3.887 25 H 0.277 0.723 26 H 0.111 0.889 27 H 0.112 0.888 28 H 0.082 0.918 29 H 0.082 0.918 30 H 0.110 0.890 31 H 0.092 0.908 32 H 0.148 0.852 33 H 0.171 0.829 34 H 0.174 0.826 35 H 0.156 0.844 36 H 0.073 0.927 37 H 0.064 0.936 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 17.659 -20.594 0.899 27.144 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.554 5.554 2 C -0.159 4.159 3 Si 0.735 3.265 4 H -0.187 1.187 5 H -0.183 1.183 6 H -0.161 1.161 7 C -0.675 4.675 8 H 0.082 0.918 9 S 0.049 5.951 10 C -0.252 4.252 11 C 0.335 3.665 12 O -0.443 6.443 13 N -0.350 5.350 14 C -0.034 4.034 15 C -0.148 4.148 16 C -0.072 4.072 17 H 0.127 0.873 18 C -0.040 4.040 19 C -0.189 4.189 20 C -0.068 4.068 21 N -0.228 5.228 22 C -0.068 4.068 23 C -0.186 4.186 24 C -0.009 4.009 25 H 0.087 0.913 26 H 0.130 0.870 27 H 0.130 0.870 28 H 0.100 0.900 29 H 0.100 0.900 30 H 0.128 0.872 31 H 0.110 0.890 32 H 0.166 0.834 33 H 0.188 0.812 34 H 0.191 0.809 35 H 0.174 0.826 36 H 0.091 0.909 37 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges 19.313 -19.523 0.618 27.469 hybrid contribution -1.886 0.344 0.164 1.924 sum 17.427 -19.179 0.782 25.926 Atomic orbital electron populations 1.70008 1.07242 1.29041 1.49069 1.25545 0.95275 1.02208 0.92902 0.85883 0.80682 0.79689 0.80222 1.18712 1.18266 1.16143 1.22426 0.90006 0.96731 1.58309 0.91820 1.84747 1.06712 1.06062 1.97580 1.23199 0.95286 0.99531 1.07191 1.19682 0.89529 0.81765 0.75511 1.90694 1.59471 1.43073 1.51104 1.48386 1.08586 1.04899 1.73095 1.22414 0.94703 0.82661 1.03572 1.22824 0.92080 0.96354 1.03535 1.21335 0.92507 0.91726 1.01656 0.87326 1.20054 0.94969 0.95254 0.93728 1.22216 0.99598 1.00434 0.96608 1.23102 0.90108 0.93457 1.00178 1.67693 1.31052 1.20456 1.03599 1.23164 0.96473 0.94967 0.92245 1.22330 0.95091 0.99261 1.01936 1.22343 0.81686 0.95542 1.01345 0.91328 0.87048 0.86975 0.89952 0.89959 0.87189 0.88952 0.83441 0.81176 0.80855 0.82640 0.90860 0.91765 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -55.45 13.97 21.65 0.30 -55.15 16 2 C 0.05 2.70 5.50 84.86 0.47 3.17 16 3 Si 0.91 44.92 27.74 68.60 1.90 46.82 16 4 H -0.26 -12.61 7.11 99.48 0.71 -11.90 16 5 H -0.26 -11.90 7.11 99.48 0.71 -11.19 16 6 H -0.24 -11.69 6.74 99.48 0.67 -11.02 16 7 C -0.53 -30.53 10.04 67.95 0.68 -29.85 16 8 H 0.06 3.87 8.03 -2.91 -0.02 3.85 16 9 S -0.18 -9.01 18.55 -56.49 -1.05 -10.06 16 10 C -0.10 -3.84 5.35 71.24 0.38 -3.46 16 11 C 0.55 19.38 7.87 87.66 0.69 20.07 16 12 O -0.56 -24.86 16.12 -3.05 -0.05 -24.91 16 13 N -0.62 -15.13 3.33 -811.76 -2.70 -17.83 16 14 C 0.09 1.40 6.49 86.73 0.56 1.96 16 15 C -0.11 -1.09 6.37 31.88 0.20 -0.88 16 16 C -0.05 -0.66 3.30 -10.04 -0.03 -0.70 16 17 H 0.11 1.20 8.03 -2.38 -0.02 1.19 16 18 C -0.03 -0.40 5.02 -19.67 -0.10 -0.50 16 19 C -0.17 -2.16 8.42 22.36 0.19 -1.97 16 20 C 0.09 1.27 11.18 84.68 0.95 2.22 16 21 N -0.52 -9.16 10.36 -195.84 -2.03 -11.19 16 22 C 0.09 1.21 11.18 84.68 0.95 2.15 16 23 C -0.17 -1.96 9.79 22.36 0.22 -1.74 16 24 C 0.11 2.29 6.32 86.86 0.55 2.83 16 25 H 0.28 15.51 8.31 -92.70 -0.77 14.74 16 26 H 0.11 3.89 8.14 -2.39 -0.02 3.87 16 27 H 0.11 3.91 8.14 -2.40 -0.02 3.89 16 28 H 0.08 1.22 8.14 -2.39 -0.02 1.20 16 29 H 0.08 1.23 8.14 -2.39 -0.02 1.21 16 30 H 0.11 0.68 8.14 -2.39 -0.02 0.66 16 31 H 0.09 0.77 6.85 -2.39 -0.02 0.75 16 32 H 0.15 1.46 7.17 -2.91 -0.02 1.44 16 33 H 0.17 1.71 8.06 -2.91 -0.02 1.69 16 34 H 0.17 1.50 8.06 -2.91 -0.02 1.47 16 35 H 0.16 1.12 8.04 -2.91 -0.02 1.10 16 36 H 0.07 1.44 7.17 -2.39 -0.02 1.42 16 37 H 0.06 1.54 8.03 -2.39 -0.02 1.52 16 Total: -1.00 -76.24 326.28 3.11 -73.13 By element: Atomic # 1 Polarization: 4.86 SS G_CDS: 1.03 Total: 5.89 kcal Atomic # 6 Polarization: -12.41 SS G_CDS: 5.70 Total: -6.70 kcal Atomic # 7 Polarization: -79.74 SS G_CDS: -4.43 Total: -84.17 kcal Atomic # 8 Polarization: -24.86 SS G_CDS: -0.05 Total: -24.91 kcal Atomic # 14 Polarization: 44.92 SS G_CDS: 1.90 Total: 46.82 kcal Atomic # 16 Polarization: -9.01 SS G_CDS: -1.05 Total: -10.06 kcal Total: -76.24 3.11 -73.13 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000565861802.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 49.550 kcal (2) G-P(sol) polarization free energy of solvation -76.239 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -26.689 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.112 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.127 kcal (6) G-S(sol) free energy of system = (1) + (5) -23.577 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds