Wall clock time and date at job start Tue Mar 31 2020 06:28:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50692 * 1 3 3 C 1.38384 * 119.35770 * 2 1 4 4 C 1.38685 * 119.49181 * 180.02562 * 3 2 1 5 5 C 1.38555 * 118.28090 * 359.97438 * 4 3 2 6 6 O 1.35169 * 134.07843 * 180.02562 * 5 4 3 7 7 C 1.34486 * 108.06547 * 180.02562 * 6 5 4 8 8 S 1.76197 * 124.98082 * 180.02562 * 7 6 5 9 9 C 1.81000 * 100.00230 * 179.97438 * 8 7 6 10 10 C 1.53001 * 109.47251 * 179.97438 * 9 8 7 11 11 C 1.52994 * 109.47213 * 300.00015 * 10 9 8 12 12 C 1.53007 * 109.47112 * 59.99797 * 10 9 8 13 13 C 1.50698 * 109.46957 * 179.97438 * 10 9 8 14 14 H 1.08002 * 120.00644 * 359.97438 * 13 10 9 15 15 C 1.37883 * 119.99654 * 180.02562 * 13 10 9 16 16 N 1.31514 * 120.00149 * 0.02562 * 15 13 10 17 17 Si 1.86801 * 119.99842 * 179.97438 * 15 13 10 18 18 H 1.48501 * 109.47083 * 60.00171 * 17 15 13 19 19 H 1.48495 * 109.47157 * 179.97438 * 17 15 13 20 20 H 1.48497 * 109.47554 * 300.00178 * 17 15 13 21 21 N 1.31084 * 110.04299 * 0.03467 * 7 6 5 22 22 C 1.35878 * 108.82505 * 359.95888 * 21 7 6 23 23 N 1.31716 * 119.36077 * 180.02562 * 2 1 3 24 24 H 1.09001 * 109.47352 * 89.99830 * 1 2 3 25 25 H 1.09006 * 109.47266 * 209.99748 * 1 2 3 26 26 H 1.09006 * 109.47531 * 329.99335 * 1 2 3 27 27 H 1.08001 * 120.25333 * 0.02654 * 3 2 1 28 28 H 1.08003 * 120.86366 * 179.72900 * 4 3 2 29 29 H 1.09004 * 109.46772 * 299.99412 * 9 8 7 30 30 H 1.08996 * 109.47406 * 59.99921 * 9 8 7 31 31 H 1.08995 * 109.47288 * 59.99842 * 11 10 9 32 32 H 1.09003 * 109.47218 * 179.97438 * 11 10 9 33 33 H 1.09004 * 109.47242 * 299.99664 * 11 10 9 34 34 H 1.09001 * 109.46810 * 59.99981 * 12 10 9 35 35 H 1.08996 * 109.47021 * 179.97438 * 12 10 9 36 36 H 1.08995 * 109.47093 * 299.99977 * 12 10 9 37 37 H 0.97004 * 119.99889 * 180.02562 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 6 2.1854 1.2061 0.0000 4 6 3.5722 1.2094 -0.0005 5 6 4.2315 -0.0093 -0.0005 6 8 5.5330 -0.3742 -0.0005 7 6 5.5894 -1.7179 -0.0011 8 16 7.0741 -2.6666 -0.0006 9 6 6.3792 -4.3379 -0.0009 10 6 7.5154 -5.3627 -0.0013 11 6 8.3770 -5.1684 -1.2505 12 6 8.3773 -5.1689 1.2480 13 6 6.9367 -6.7541 -0.0009 14 1 5.8658 -6.8937 -0.0001 15 6 7.7747 -7.8491 -0.0006 16 7 9.0788 -7.6792 -0.0001 17 14 7.0575 -9.5740 0.0006 18 1 6.2207 -9.7629 -1.2116 19 1 8.1602 -10.5686 0.0002 20 1 6.2214 -9.7617 1.2134 21 7 4.3778 -2.2183 -0.0022 22 6 3.4816 -1.1971 -0.0014 23 7 2.1527 -1.1480 -0.0005 24 1 -0.3634 0.0000 -1.0277 25 1 -0.3634 -0.8900 0.5138 26 1 -0.3634 0.8899 0.5139 27 1 1.6390 2.1378 0.0004 28 1 4.1241 2.1377 -0.0049 29 1 5.7651 -4.4762 0.8889 30 1 5.7656 -4.4761 -0.8911 31 1 8.7955 -4.1620 -1.2503 32 1 9.1867 -5.8982 -1.2505 33 1 7.7630 -5.3065 -2.1405 34 1 7.7634 -5.3073 2.1380 35 1 9.1864 -5.8992 1.2480 36 1 8.7958 -4.1625 1.2481 37 1 9.6683 -8.4496 -0.0002 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000568270666.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:28:51 Heat of formation + Delta-G solvation = 45.276206 kcal Electronic energy + Delta-G solvation = -20261.632063 eV Core-core repulsion = 17131.933292 eV Total energy + Delta-G solvation = -3129.698771 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 292.099 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -43.21122 -39.33868 -36.14381 -34.82905 -32.70566 -31.69022 -31.54161 -27.84002 -26.46822 -25.80077 -25.20636 -24.19970 -22.90831 -22.15244 -19.54940 -18.52651 -17.90128 -16.98000 -16.49380 -16.08446 -15.72982 -14.79318 -14.41078 -14.22398 -13.87114 -13.72294 -13.46694 -12.97101 -12.88126 -12.57149 -12.43811 -12.32390 -11.83742 -11.41418 -11.37614 -10.97897 -10.88432 -10.83890 -10.42884 -10.42171 -10.10995 -9.70652 -9.60272 -9.54410 -9.46412 -9.19768 -8.80136 -8.44088 -7.45897 -6.07011 -4.18188 0.40749 0.89796 0.91719 2.17002 2.38236 2.87796 3.28768 3.33127 3.37281 3.57253 3.77690 4.22876 4.36707 4.45732 4.78065 4.87789 5.18639 5.19740 5.34546 5.37954 5.41849 5.71158 5.81309 5.88236 5.88294 5.98069 6.20669 6.41390 6.70105 6.78608 6.88740 6.92649 7.25099 7.29309 7.47401 7.65168 7.80298 7.92913 8.05212 8.29336 8.80993 9.47741 10.94348 Molecular weight = 292.10amu Principal moments of inertia in cm(-1) A = 0.026069 B = 0.003579 C = 0.003218 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1073.821157 B = 7821.291204 C = 8698.752384 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.101 4.101 2 C 0.150 3.850 3 C -0.167 4.167 4 C -0.033 4.033 5 C -0.064 4.064 6 O -0.193 6.193 7 C 0.248 3.752 8 S 0.060 5.940 9 C -0.082 4.082 10 C 0.082 3.918 11 C -0.138 4.138 12 C -0.139 4.139 13 C -0.506 4.506 14 H 0.060 0.940 15 C 0.069 3.931 16 N -0.885 5.885 17 Si 0.897 3.103 18 H -0.276 1.276 19 H -0.287 1.287 20 H -0.276 1.276 21 N -0.484 5.484 22 C 0.259 3.741 23 N -0.448 5.448 24 H 0.081 0.919 25 H 0.080 0.920 26 H 0.079 0.921 27 H 0.151 0.849 28 H 0.146 0.854 29 H 0.090 0.910 30 H 0.090 0.910 31 H 0.016 0.984 32 H 0.090 0.910 33 H 0.032 0.968 34 H 0.032 0.968 35 H 0.090 0.910 36 H 0.016 0.984 37 H 0.262 0.738 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.493 17.199 -0.011 19.645 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.159 4.159 2 C 0.003 3.997 3 C -0.188 4.188 4 C -0.060 4.060 5 C -0.120 4.120 6 O -0.085 6.085 7 C -0.071 4.071 8 S 0.294 5.706 9 C -0.230 4.230 10 C 0.079 3.921 11 C -0.197 4.197 12 C -0.197 4.197 13 C -0.546 4.546 14 H 0.078 0.922 15 C -0.133 4.133 16 N -0.523 5.523 17 Si 0.724 3.276 18 H -0.202 1.202 19 H -0.212 1.212 20 H -0.202 1.202 21 N -0.220 5.220 22 C 0.018 3.982 23 N -0.161 5.161 24 H 0.100 0.900 25 H 0.099 0.901 26 H 0.098 0.902 27 H 0.169 0.831 28 H 0.164 0.836 29 H 0.108 0.892 30 H 0.108 0.892 31 H 0.035 0.965 32 H 0.109 0.891 33 H 0.051 0.949 34 H 0.051 0.949 35 H 0.109 0.891 36 H 0.035 0.965 37 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges -8.693 15.977 -0.009 18.189 hybrid contribution -1.003 0.207 -0.011 1.024 sum -9.696 16.184 -0.021 18.866 Atomic orbital electron populations 1.20729 0.87779 1.03859 1.03484 1.21282 0.97212 0.87039 0.94155 1.21763 0.92897 0.99768 1.04375 1.20319 0.93475 0.94433 0.97759 1.21221 0.83141 0.98604 1.09022 1.84677 1.25391 1.23250 1.75195 1.29679 1.00907 0.81393 0.95075 1.86349 0.94740 1.01663 1.87799 1.24458 1.04073 0.88158 1.06301 1.18115 0.89123 0.91273 0.93595 1.21964 1.01707 0.98597 0.97382 1.21968 1.01720 0.98596 0.97380 1.20934 0.93127 0.88942 1.51620 0.92215 1.24873 0.94825 0.99052 0.94589 1.69788 1.02091 1.30359 1.50039 0.86579 0.78610 0.83606 0.78779 1.20190 1.21241 1.20185 1.71244 0.96929 1.29050 1.24780 1.20396 0.90871 0.87671 0.99224 1.66683 1.05948 1.29555 1.13892 0.89999 0.90074 0.90238 0.83099 0.83629 0.89175 0.89176 0.96537 0.89120 0.94914 0.94921 0.89103 0.96539 0.92744 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -0.78 10.15 36.00 0.37 -0.41 16 2 C 0.15 1.78 6.77 -82.59 -0.56 1.22 16 3 C -0.17 -1.58 9.72 -39.36 -0.38 -1.96 16 4 C -0.03 -0.37 10.18 -39.30 -0.40 -0.77 16 5 C -0.06 -1.01 7.43 -38.62 -0.29 -1.30 16 6 O -0.19 -3.28 10.79 2.77 0.03 -3.25 16 7 C 0.25 4.55 8.36 52.44 0.44 4.99 16 8 S 0.06 1.08 19.36 -107.50 -2.08 -1.01 16 9 C -0.08 -1.68 4.09 37.16 0.15 -1.53 16 10 C 0.08 1.87 0.52 -155.66 -0.08 1.79 16 11 C -0.14 -3.12 8.01 37.15 0.30 -2.82 16 12 C -0.14 -3.12 8.01 37.16 0.30 -2.83 16 13 C -0.51 -13.05 8.01 -34.44 -0.28 -13.33 16 14 H 0.06 1.55 7.74 -52.49 -0.41 1.14 16 15 C 0.07 1.78 5.15 -17.82 -0.09 1.69 16 16 N -0.88 -23.29 9.35 55.43 0.52 -22.77 16 17 Si 0.90 20.52 29.54 -169.99 -5.02 15.50 16 18 H -0.28 -6.34 7.11 56.52 0.40 -5.93 16 19 H -0.29 -6.52 7.11 56.52 0.40 -6.12 16 20 H -0.28 -6.33 7.11 56.52 0.40 -5.93 16 21 N -0.48 -9.67 10.62 -12.97 -0.14 -9.81 16 22 C 0.26 4.74 8.38 -156.98 -1.31 3.42 16 23 N -0.45 -7.46 10.32 -8.92 -0.09 -7.55 16 24 H 0.08 0.54 8.14 -51.93 -0.42 0.12 16 25 H 0.08 0.68 8.14 -51.93 -0.42 0.26 16 26 H 0.08 0.38 8.07 -51.93 -0.42 -0.04 16 27 H 0.15 0.79 8.06 -52.49 -0.42 0.36 16 28 H 0.15 1.14 8.06 -52.48 -0.42 0.72 16 29 H 0.09 1.89 8.14 -51.91 -0.42 1.47 16 30 H 0.09 1.89 8.14 -51.92 -0.42 1.47 16 31 H 0.02 0.32 6.91 -51.93 -0.36 -0.03 16 32 H 0.09 2.24 6.07 -51.93 -0.32 1.93 16 33 H 0.03 0.72 8.14 -51.93 -0.42 0.29 16 34 H 0.03 0.72 8.14 -51.93 -0.42 0.29 16 35 H 0.09 2.25 6.07 -51.93 -0.31 1.93 16 36 H 0.02 0.32 6.91 -51.93 -0.36 -0.03 16 37 H 0.26 6.68 8.31 -40.82 -0.34 6.34 16 LS Contribution 321.14 15.07 4.84 4.84 Total: -1.00 -29.16 321.14 -8.48 -37.63 By element: Atomic # 1 Polarization: 2.93 SS G_CDS: -4.69 Total: -1.76 kcal Atomic # 6 Polarization: -9.99 SS G_CDS: -1.84 Total: -11.83 kcal Atomic # 7 Polarization: -40.42 SS G_CDS: 0.29 Total: -40.13 kcal Atomic # 8 Polarization: -3.28 SS G_CDS: 0.03 Total: -3.25 kcal Atomic # 14 Polarization: 20.52 SS G_CDS: -5.02 Total: 15.50 kcal Atomic # 16 Polarization: 1.08 SS G_CDS: -2.08 Total: -1.01 kcal Total LS contribution 4.84 Total: 4.84 kcal Total: -29.16 -8.48 -37.63 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000568270666.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 82.909 kcal (2) G-P(sol) polarization free energy of solvation -29.157 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 53.752 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.476 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.633 kcal (6) G-S(sol) free energy of system = (1) + (5) 45.276 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds