Wall clock time and date at job start Tue Mar 31 2020 06:28:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50692 * 1 3 3 C 1.38384 * 119.35770 * 2 1 4 4 C 1.38685 * 119.49181 * 180.02562 * 3 2 1 5 5 C 1.38555 * 118.28090 * 359.97438 * 4 3 2 6 6 O 1.35169 * 134.07843 * 180.02562 * 5 4 3 7 7 C 1.34486 * 108.06547 * 180.02562 * 6 5 4 8 8 S 1.76197 * 124.98082 * 180.02562 * 7 6 5 9 9 C 1.81000 * 100.00230 * 179.97438 * 8 7 6 10 10 C 1.53001 * 109.47251 * 179.97438 * 9 8 7 11 11 C 1.52994 * 109.47213 * 300.00015 * 10 9 8 12 12 C 1.53007 * 109.47112 * 59.99797 * 10 9 8 13 13 C 1.50698 * 109.46957 * 179.97438 * 10 9 8 14 14 H 1.08002 * 120.00644 * 359.97438 * 13 10 9 15 15 C 1.37883 * 119.99654 * 180.02562 * 13 10 9 16 16 N 1.31514 * 120.00149 * 0.02562 * 15 13 10 17 17 Si 1.86801 * 119.99842 * 179.97438 * 15 13 10 18 18 H 1.48501 * 109.47083 * 60.00171 * 17 15 13 19 19 H 1.48495 * 109.47157 * 179.97438 * 17 15 13 20 20 H 1.48497 * 109.47554 * 300.00178 * 17 15 13 21 21 N 1.31084 * 110.04299 * 0.03467 * 7 6 5 22 22 C 1.35878 * 108.82505 * 359.95888 * 21 7 6 23 23 N 1.31716 * 119.36077 * 180.02562 * 2 1 3 24 24 H 1.09001 * 109.47352 * 89.99830 * 1 2 3 25 25 H 1.09006 * 109.47266 * 209.99748 * 1 2 3 26 26 H 1.09006 * 109.47531 * 329.99335 * 1 2 3 27 27 H 1.08001 * 120.25333 * 0.02654 * 3 2 1 28 28 H 1.08003 * 120.86366 * 179.72900 * 4 3 2 29 29 H 1.09004 * 109.46772 * 299.99412 * 9 8 7 30 30 H 1.08996 * 109.47406 * 59.99921 * 9 8 7 31 31 H 1.08995 * 109.47288 * 59.99842 * 11 10 9 32 32 H 1.09003 * 109.47218 * 179.97438 * 11 10 9 33 33 H 1.09004 * 109.47242 * 299.99664 * 11 10 9 34 34 H 1.09001 * 109.46810 * 59.99981 * 12 10 9 35 35 H 1.08996 * 109.47021 * 179.97438 * 12 10 9 36 36 H 1.08995 * 109.47093 * 299.99977 * 12 10 9 37 37 H 0.97004 * 119.99889 * 180.02562 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 6 2.1854 1.2061 0.0000 4 6 3.5722 1.2094 -0.0005 5 6 4.2315 -0.0093 -0.0005 6 8 5.5330 -0.3742 -0.0005 7 6 5.5894 -1.7179 -0.0011 8 16 7.0741 -2.6666 -0.0006 9 6 6.3792 -4.3379 -0.0009 10 6 7.5154 -5.3627 -0.0013 11 6 8.3770 -5.1684 -1.2505 12 6 8.3773 -5.1689 1.2480 13 6 6.9367 -6.7541 -0.0009 14 1 5.8658 -6.8937 -0.0001 15 6 7.7747 -7.8491 -0.0006 16 7 9.0788 -7.6792 -0.0001 17 14 7.0575 -9.5740 0.0006 18 1 6.2207 -9.7629 -1.2116 19 1 8.1602 -10.5686 0.0002 20 1 6.2214 -9.7617 1.2134 21 7 4.3778 -2.2183 -0.0022 22 6 3.4816 -1.1971 -0.0014 23 7 2.1527 -1.1480 -0.0005 24 1 -0.3634 0.0000 -1.0277 25 1 -0.3634 -0.8900 0.5138 26 1 -0.3634 0.8899 0.5139 27 1 1.6390 2.1378 0.0004 28 1 4.1241 2.1377 -0.0049 29 1 5.7651 -4.4762 0.8889 30 1 5.7656 -4.4761 -0.8911 31 1 8.7955 -4.1620 -1.2503 32 1 9.1867 -5.8982 -1.2505 33 1 7.7630 -5.3065 -2.1405 34 1 7.7634 -5.3073 2.1380 35 1 9.1864 -5.8992 1.2480 36 1 8.7958 -4.1625 1.2481 37 1 9.6683 -8.4496 -0.0002 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000568270666.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:28:50 Heat of formation + Delta-G solvation = 27.341816 kcal Electronic energy + Delta-G solvation = -20262.409757 eV Core-core repulsion = 17131.933292 eV Total energy + Delta-G solvation = -3130.476465 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 292.099 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -44.41945 -40.35711 -37.98291 -36.08235 -33.65626 -33.57341 -32.60354 -28.86286 -28.07949 -27.63665 -27.19402 -25.30641 -23.99510 -23.26996 -21.16701 -19.95361 -19.02202 -18.24746 -18.00599 -17.69047 -16.75694 -16.66030 -15.77602 -15.34963 -15.14440 -14.96209 -14.78246 -14.58832 -14.09463 -13.71069 -13.49042 -13.36996 -13.23480 -13.04811 -12.87145 -12.67296 -12.62309 -12.27842 -12.27595 -12.16363 -11.90329 -11.52363 -11.41748 -10.66627 -10.63495 -10.53358 -10.44636 -10.28069 -8.82440 -8.04527 -6.21307 -0.68524 -0.47037 -0.09845 0.91819 0.98418 1.44633 1.45773 1.52553 1.62237 2.45425 2.52132 2.72860 3.15159 3.19208 3.65563 3.85222 4.08197 4.15632 4.19028 4.23278 4.47369 4.64646 4.67201 4.80268 4.84337 4.91676 4.97597 5.00093 5.07078 5.09405 5.13180 5.40099 5.42021 5.60290 5.65224 6.05836 6.06499 6.14384 6.37121 6.76457 6.81115 7.46385 8.94660 Molecular weight = 292.10amu Principal moments of inertia in cm(-1) A = 0.026069 B = 0.003579 C = 0.003218 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1073.821157 B = 7821.291204 C = 8698.752384 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.100 4.100 2 C 0.144 3.856 3 C -0.136 4.136 4 C -0.029 4.029 5 C -0.080 4.080 6 O -0.193 6.193 7 C 0.230 3.770 8 S 0.093 5.907 9 C -0.077 4.077 10 C 0.075 3.925 11 C -0.129 4.129 12 C -0.130 4.130 13 C -0.528 4.528 14 H 0.048 0.952 15 C 0.031 3.969 16 N -0.899 5.899 17 Si 0.948 3.052 18 H -0.277 1.277 19 H -0.281 1.281 20 H -0.277 1.277 21 N -0.516 5.516 22 C 0.211 3.789 23 N -0.491 5.491 24 H 0.096 0.904 25 H 0.067 0.933 26 H 0.119 0.881 27 H 0.210 0.790 28 H 0.187 0.813 29 H 0.077 0.923 30 H 0.077 0.923 31 H 0.038 0.962 32 H 0.068 0.932 33 H 0.027 0.973 34 H 0.027 0.973 35 H 0.068 0.932 36 H 0.038 0.962 37 H 0.263 0.737 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.175 20.409 -0.018 23.268 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.157 4.157 2 C -0.003 4.003 3 C -0.156 4.156 4 C -0.056 4.056 5 C -0.136 4.136 6 O -0.084 6.084 7 C -0.089 4.089 8 S 0.327 5.673 9 C -0.225 4.225 10 C 0.073 3.927 11 C -0.188 4.188 12 C -0.188 4.188 13 C -0.567 4.567 14 H 0.066 0.934 15 C -0.170 4.170 16 N -0.537 5.537 17 Si 0.774 3.226 18 H -0.202 1.202 19 H -0.207 1.207 20 H -0.202 1.202 21 N -0.253 5.253 22 C -0.027 4.027 23 N -0.206 5.206 24 H 0.115 0.885 25 H 0.086 0.914 26 H 0.138 0.862 27 H 0.227 0.773 28 H 0.204 0.796 29 H 0.096 0.904 30 H 0.096 0.904 31 H 0.057 0.943 32 H 0.087 0.913 33 H 0.046 0.954 34 H 0.046 0.954 35 H 0.087 0.913 36 H 0.057 0.943 37 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges -10.373 19.199 -0.016 21.822 hybrid contribution -0.745 -0.566 -0.011 0.936 sum -11.118 18.632 -0.027 21.698 Atomic orbital electron populations 1.20918 0.84788 1.05202 1.04772 1.22228 0.99169 0.86853 0.92056 1.22465 0.92258 1.00978 0.99947 1.21010 0.94339 0.94106 0.96129 1.21781 0.82209 0.99653 1.09980 1.84619 1.26383 1.22326 1.75108 1.29437 1.00522 0.82150 0.96752 1.85894 0.93920 0.98907 1.88622 1.24038 1.02962 0.90394 1.05138 1.18086 0.89821 0.90900 0.93938 1.21822 1.00765 0.99189 0.96977 1.21826 1.00779 0.99186 0.96975 1.21214 0.92751 0.90889 1.51876 0.93394 1.25457 0.95195 1.01826 0.94474 1.69895 1.02652 1.30947 1.50255 0.85778 0.78012 0.80316 0.78494 1.20209 1.20673 1.20202 1.71077 0.98097 1.31130 1.25014 1.20566 0.91780 0.88192 1.02170 1.66698 1.05584 1.32495 1.15778 0.88538 0.91415 0.86225 0.77297 0.79563 0.90402 0.90400 0.94345 0.91300 0.95355 0.95370 0.91282 0.94348 0.92788 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -1.17 10.15 71.23 0.72 -0.45 16 2 C 0.14 3.01 6.77 42.61 0.29 3.30 16 3 C -0.14 -1.89 9.72 22.41 0.22 -1.68 16 4 C -0.03 -0.54 10.18 22.45 0.23 -0.32 16 5 C -0.08 -2.47 7.43 22.89 0.17 -2.30 16 6 O -0.19 -6.53 10.79 -13.01 -0.14 -6.67 16 7 C 0.23 8.66 8.36 130.35 1.09 9.75 16 8 S 0.09 3.36 19.36 -56.49 -1.09 2.26 16 9 C -0.08 -3.28 4.09 71.98 0.29 -2.98 16 10 C 0.07 3.54 0.52 -52.93 -0.03 3.51 16 11 C -0.13 -5.93 8.01 71.98 0.58 -5.35 16 12 C -0.13 -5.93 8.01 71.98 0.58 -5.36 16 13 C -0.53 -28.04 8.01 25.60 0.21 -27.83 16 14 H 0.05 2.59 7.74 -2.91 -0.02 2.57 16 15 C 0.03 1.63 5.15 84.66 0.44 2.06 16 16 N -0.90 -48.18 9.35 21.45 0.20 -47.98 16 17 Si 0.95 42.75 29.54 68.60 2.03 44.78 16 18 H -0.28 -12.40 7.11 99.48 0.71 -11.69 16 19 H -0.28 -12.37 7.11 99.48 0.71 -11.66 16 20 H -0.28 -12.40 7.11 99.48 0.71 -11.69 16 21 N -0.52 -21.52 10.62 -309.05 -3.28 -24.80 16 22 C 0.21 7.86 8.38 134.26 1.12 8.98 16 23 N -0.49 -16.28 10.32 -182.15 -1.88 -18.16 16 24 H 0.10 0.91 8.14 -2.39 -0.02 0.89 16 25 H 0.07 1.01 8.14 -2.38 -0.02 0.99 16 26 H 0.12 0.46 8.07 -2.38 -0.02 0.44 16 27 H 0.21 0.50 8.06 -2.91 -0.02 0.47 16 28 H 0.19 1.90 8.06 -2.91 -0.02 1.88 16 29 H 0.08 3.45 8.14 -2.39 -0.02 3.43 16 30 H 0.08 3.45 8.14 -2.40 -0.02 3.43 16 31 H 0.04 1.54 6.91 -2.39 -0.02 1.53 16 32 H 0.07 3.47 6.07 -2.39 -0.01 3.45 16 33 H 0.03 1.26 8.14 -2.38 -0.02 1.24 16 34 H 0.03 1.26 8.14 -2.39 -0.02 1.24 16 35 H 0.07 3.48 6.07 -2.39 -0.01 3.46 16 36 H 0.04 1.54 6.91 -2.39 -0.02 1.52 16 37 H 0.26 13.53 8.31 -92.71 -0.77 12.76 16 Total: -1.00 -67.78 321.14 2.82 -64.96 By element: Atomic # 1 Polarization: 3.19 SS G_CDS: 1.08 Total: 4.27 kcal Atomic # 6 Polarization: -24.57 SS G_CDS: 5.90 Total: -18.66 kcal Atomic # 7 Polarization: -85.99 SS G_CDS: -4.96 Total: -90.95 kcal Atomic # 8 Polarization: -6.53 SS G_CDS: -0.14 Total: -6.67 kcal Atomic # 14 Polarization: 42.75 SS G_CDS: 2.03 Total: 44.78 kcal Atomic # 16 Polarization: 3.36 SS G_CDS: -1.09 Total: 2.26 kcal Total: -67.78 2.82 -64.96 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000568270666.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 92.307 kcal (2) G-P(sol) polarization free energy of solvation -67.783 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 24.524 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.818 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.965 kcal (6) G-S(sol) free energy of system = (1) + (5) 27.342 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds