Wall clock time and date at job start Tue Mar 31 2020 06:44:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 C 1.53005 * 109.47061 * 2 1 4 4 H 1.08991 * 109.47520 * 54.51733 * 3 2 1 5 5 C 1.50707 * 109.46959 * 174.52003 * 3 2 1 6 6 H 1.08004 * 119.99649 * 119.99929 * 5 3 2 7 7 C 1.37874 * 119.99906 * 299.71980 * 5 3 2 8 8 N 1.31514 * 120.00159 * 0.28209 * 7 5 3 9 9 Si 1.86793 * 120.00014 * 180.27814 * 7 5 3 10 10 H 1.48498 * 109.47314 * 90.00013 * 9 7 5 11 11 H 1.48504 * 109.47217 * 210.00134 * 9 7 5 12 12 H 1.48506 * 109.47267 * 329.99750 * 9 7 5 13 13 N 1.46902 * 109.46761 * 294.51701 * 3 2 1 14 14 C 1.46900 * 110.99889 * 154.43917 * 13 3 2 15 15 C 1.50695 * 109.47342 * 174.77324 * 14 13 3 16 16 C 1.34481 * 126.05406 * 94.70971 * 15 14 13 17 17 O 1.34899 * 107.33379 * 179.84263 * 16 15 14 18 18 C 1.34545 * 107.68286 * 0.42356 * 17 16 15 19 19 C 1.47011 * 125.76419 * 179.75491 * 18 17 16 20 20 C 1.36170 * 125.33645 * 359.97438 * 19 18 17 21 21 C 1.37724 * 114.44789 * 179.97438 * 20 19 18 22 22 C 1.33721 * 115.19323 * 359.97438 * 21 20 19 23 23 S 1.75831 * 109.95431 * 359.77134 * 22 21 20 24 24 N 1.31533 * 108.47091 * 359.73540 * 18 17 16 25 25 H 1.08999 * 109.47160 * 305.96381 * 1 2 3 26 26 H 1.08999 * 109.47072 * 65.96362 * 1 2 3 27 27 H 1.09002 * 109.47422 * 185.96225 * 1 2 3 28 28 H 1.08999 * 109.47606 * 239.99888 * 2 1 3 29 29 H 1.09005 * 109.47314 * 119.99514 * 2 1 3 30 30 H 0.97000 * 120.00200 * 180.02562 * 8 7 5 31 31 H 1.00895 * 110.99920 * 30.48247 * 13 3 2 32 32 H 1.09002 * 109.46730 * 294.77420 * 14 13 3 33 33 H 1.08998 * 109.47631 * 54.76794 * 14 13 3 34 34 H 1.07996 * 126.32929 * 359.96783 * 16 15 14 35 35 H 1.08004 * 122.77907 * 359.97438 * 20 19 18 36 36 H 1.07997 * 122.41123 * 179.97438 * 21 20 19 37 37 H 1.07992 * 125.02234 * 179.97438 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 1 1.5987 1.9840 0.8367 5 6 3.5409 1.4447 0.1357 6 1 4.1523 1.8871 -0.6369 7 6 4.1332 0.8870 1.2488 8 7 3.3887 0.3483 2.1896 9 14 5.9932 0.8966 1.4207 10 1 6.4193 2.1349 2.1209 11 1 6.4240 -0.2887 2.2049 12 1 6.6151 0.8511 0.0729 13 7 1.6613 2.0957 -1.2602 14 6 1.5681 3.5520 -1.0910 15 6 1.3050 4.1971 -2.4272 16 6 0.0994 4.5286 -2.9225 17 8 0.3017 5.0816 -4.1361 18 6 1.6261 5.0737 -4.3733 19 6 2.2848 5.5796 -5.5863 20 6 1.6486 6.1336 -6.6552 21 6 2.4863 6.5333 -7.6727 22 6 3.7881 6.3178 -7.4561 23 16 4.0188 5.5718 -5.8807 24 7 2.2319 4.5372 -3.3363 25 1 -0.3633 0.6035 0.8318 26 1 -0.3633 0.4186 -0.9385 27 1 -0.3634 -1.0221 0.1067 28 1 1.8934 -0.5138 -0.8899 29 1 1.8933 -0.5138 0.8901 30 1 3.8054 -0.0438 2.9729 31 1 0.7972 1.7172 -1.6182 32 1 0.7524 3.7868 -0.4072 33 1 2.5049 3.9311 -0.6827 34 1 -0.8541 4.3812 -2.4373 35 1 0.5758 6.2500 -6.7013 36 1 2.1183 6.9880 -8.5805 37 1 4.5809 6.5682 -8.1453 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000569706925.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:44:39 Heat of formation + Delta-G solvation = 57.765387 kcal Electronic energy + Delta-G solvation = -20101.790786 eV Core-core repulsion = 16972.633586 eV Total energy + Delta-G solvation = -3129.157200 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 292.099 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -43.06900 -37.85695 -36.56375 -34.72005 -32.70068 -31.69111 -30.73436 -28.54074 -26.70156 -24.85016 -24.63442 -22.58845 -22.01267 -21.07833 -19.58394 -19.00643 -18.11902 -16.56732 -16.52859 -16.22453 -15.71635 -14.93007 -14.70717 -14.06546 -13.92893 -13.60761 -13.28140 -13.16896 -12.89225 -12.58237 -12.37289 -12.36116 -11.82885 -11.39885 -11.07371 -10.97626 -10.93324 -10.79409 -10.60193 -10.30876 -9.92783 -9.83817 -9.66851 -9.53350 -9.05676 -8.69741 -8.31805 -8.13150 -7.24496 -5.93613 -3.97067 0.29284 1.18960 1.73233 1.79149 2.43707 2.90741 3.07265 3.36506 3.42641 3.49222 3.93393 4.49653 4.80499 4.96571 5.05525 5.15487 5.29211 5.35244 5.58491 5.63115 5.71540 5.91358 5.98190 6.11278 6.13632 6.15063 6.16724 6.33160 6.41280 6.58487 6.83124 7.06539 7.17278 7.46520 7.77542 7.87659 7.96007 8.27082 8.39903 8.75065 9.12060 9.67999 11.11885 Molecular weight = 292.10amu Principal moments of inertia in cm(-1) A = 0.017757 B = 0.003766 C = 0.003232 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1576.471620 B = 7432.970345 C = 8662.436649 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.125 4.125 3 C 0.220 3.780 4 H 0.003 0.997 5 C -0.492 4.492 6 H 0.063 0.937 7 C 0.055 3.945 8 N -0.898 5.898 9 Si 0.895 3.105 10 H -0.282 1.282 11 H -0.288 1.288 12 H -0.273 1.273 13 N -0.678 5.678 14 C 0.142 3.858 15 C 0.023 3.977 16 C -0.079 4.079 17 O -0.197 6.197 18 C 0.241 3.759 19 C -0.125 4.125 20 C -0.107 4.107 21 C -0.138 4.138 22 C -0.225 4.225 23 S 0.220 5.780 24 N -0.441 5.441 25 H 0.042 0.958 26 H 0.034 0.966 27 H 0.038 0.962 28 H 0.041 0.959 29 H 0.101 0.899 30 H 0.259 0.741 31 H 0.316 0.684 32 H 0.036 0.964 33 H 0.094 0.906 34 H 0.216 0.784 35 H 0.146 0.854 36 H 0.144 0.856 37 H 0.170 0.830 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.508 11.431 -16.079 20.483 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.164 4.164 3 C 0.113 3.887 4 H 0.021 0.979 5 C -0.531 4.531 6 H 0.082 0.918 7 C -0.145 4.145 8 N -0.538 5.538 9 Si 0.723 3.277 10 H -0.209 1.209 11 H -0.214 1.214 12 H -0.198 1.198 13 N -0.310 5.310 14 C 0.012 3.988 15 C -0.099 4.099 16 C -0.151 4.151 17 O -0.084 6.084 18 C 0.036 3.964 19 C -0.243 4.243 20 C -0.141 4.141 21 C -0.168 4.168 22 C -0.362 4.362 23 S 0.486 5.514 24 N -0.171 5.171 25 H 0.062 0.938 26 H 0.053 0.947 27 H 0.057 0.943 28 H 0.060 0.940 29 H 0.119 0.881 30 H 0.069 0.931 31 H 0.134 0.866 32 H 0.054 0.946 33 H 0.112 0.888 34 H 0.233 0.767 35 H 0.164 0.836 36 H 0.162 0.838 37 H 0.187 0.813 Dipole moment (debyes) X Y Z Total from point charges -2.905 10.796 -15.278 18.932 hybrid contribution -1.987 0.528 -0.125 2.060 sum -4.892 11.324 -15.403 19.734 Atomic orbital electron populations 1.21884 0.99626 0.99801 0.99441 1.21767 0.91191 1.00233 1.03188 1.19182 0.95685 0.89973 0.83819 0.97898 1.21245 0.91213 1.36427 1.04185 0.91839 1.24947 0.98148 0.95617 0.95823 1.69870 1.34710 1.39755 1.09501 0.86541 0.85793 0.77279 0.78078 1.20873 1.21425 1.19836 1.60615 1.36214 1.00721 1.33460 1.20157 1.01785 0.89996 0.86877 1.22064 0.88127 1.01164 0.98577 1.24933 1.01570 1.03980 0.84568 1.84492 1.27301 1.62931 1.33666 1.22385 0.77904 1.01201 0.94885 1.21474 0.97837 1.10378 0.94644 1.20617 1.01601 0.99814 0.92116 1.19934 0.92305 1.03916 1.00652 1.26106 1.00885 1.07469 1.01748 1.84720 0.99917 1.56319 1.10482 1.70804 1.33450 1.12730 1.00150 0.93846 0.94699 0.94332 0.93979 0.88124 0.93130 0.86644 0.94635 0.88772 0.76708 0.83633 0.83792 0.81273 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.85 9.64 37.15 0.36 -2.49 16 2 C -0.13 -2.94 5.36 -26.73 -0.14 -3.09 16 3 C 0.22 5.46 2.02 -68.86 -0.14 5.32 16 4 H 0.00 0.09 7.85 -51.93 -0.41 -0.32 16 5 C -0.49 -13.76 8.56 -34.44 -0.29 -14.05 16 6 H 0.06 1.85 7.81 -52.48 -0.41 1.44 16 7 C 0.05 1.53 5.29 -17.82 -0.09 1.43 16 8 N -0.90 -25.56 11.30 55.43 0.63 -24.94 16 9 Si 0.89 21.86 29.54 -169.99 -5.02 16.84 16 10 H -0.28 -6.85 7.11 56.52 0.40 -6.45 16 11 H -0.29 -6.96 7.11 56.52 0.40 -6.56 16 12 H -0.27 -6.70 7.11 56.52 0.40 -6.30 16 13 N -0.68 -14.66 6.26 -109.22 -0.68 -15.35 16 14 C 0.14 2.74 5.99 -4.98 -0.03 2.71 16 15 C 0.02 0.41 6.65 -82.88 -0.55 -0.14 16 16 C -0.08 -1.13 12.08 29.40 0.36 -0.77 16 17 O -0.20 -2.95 10.79 3.39 0.04 -2.92 16 18 C 0.24 3.91 8.09 -14.13 -0.11 3.79 16 19 C -0.12 -1.68 6.46 -36.77 -0.24 -1.92 16 20 C -0.11 -1.14 10.15 -40.51 -0.41 -1.55 16 21 C -0.14 -1.19 10.15 -41.35 -0.42 -1.61 16 22 C -0.22 -1.94 11.21 29.15 0.33 -1.61 16 23 S 0.22 2.60 23.30 -107.50 -2.50 0.10 16 24 N -0.44 -8.32 11.33 -8.13 -0.09 -8.41 16 25 H 0.04 0.82 8.14 -51.93 -0.42 0.40 16 26 H 0.03 0.59 6.66 -51.93 -0.35 0.24 16 27 H 0.04 0.67 8.14 -51.93 -0.42 0.24 16 28 H 0.04 1.00 8.14 -51.93 -0.42 0.58 16 29 H 0.10 2.65 5.96 -51.93 -0.31 2.35 16 30 H 0.26 7.07 8.31 -40.82 -0.34 6.73 16 31 H 0.32 6.19 6.63 -39.29 -0.26 5.93 16 32 H 0.04 0.62 8.14 -51.93 -0.42 0.19 16 33 H 0.09 2.04 7.94 -51.93 -0.41 1.63 16 34 H 0.22 2.16 8.06 -52.49 -0.42 1.73 16 35 H 0.15 1.33 8.06 -52.48 -0.42 0.91 16 36 H 0.14 0.84 8.06 -52.49 -0.42 0.42 16 37 H 0.17 0.97 8.06 -52.49 -0.42 0.55 16 LS Contribution 331.43 15.07 4.99 4.99 Total: -1.00 -31.24 331.43 -8.70 -39.94 By element: Atomic # 1 Polarization: 8.37 SS G_CDS: -4.66 Total: 3.71 kcal Atomic # 6 Polarization: -12.58 SS G_CDS: -1.40 Total: -13.97 kcal Atomic # 7 Polarization: -48.54 SS G_CDS: -0.15 Total: -48.69 kcal Atomic # 8 Polarization: -2.95 SS G_CDS: 0.04 Total: -2.92 kcal Atomic # 14 Polarization: 21.86 SS G_CDS: -5.02 Total: 16.84 kcal Atomic # 16 Polarization: 2.60 SS G_CDS: -2.50 Total: 0.10 kcal Total LS contribution 4.99 Total: 4.99 kcal Total: -31.24 -8.70 -39.94 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000569706925.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 97.706 kcal (2) G-P(sol) polarization free energy of solvation -31.240 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 66.467 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.701 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.941 kcal (6) G-S(sol) free energy of system = (1) + (5) 57.765 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds